Publications of Sebastian Proost

Journal Article (18)

1.
Journal Article
Julca, I., Ferrari, C., Flores-Tornero, M., Proost, S., Lindner, A.-C., Hackenberg, D., Steinbachová, L., Michaelidis, C., Gomes Pereira, S., Misra, C. S., Kawashima, T., Borg, M., Berger, F., Goldberg, J., Johnson, M., Honys, D., Twell, D., Sprunck, S., Dresselhaus, T., Becker, J. D. & Mutwil, M. Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants. Nature Plants 7, 1143–1159 (2021).
2.
Journal Article
Sujeeth, N., Mehterov, N., Gupta, S., Qureshi, M. K., Fischer, A., Proost, S., Omidbakhshfard, M. A., Obata, T., Benina, M., Staykov, N., Balazadeh, S., Walther, D., Fernie, A. R., Mueller-Roeber, B., Hille, J. & Gechev, T. S. A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cellular and Molecular Life Sciences 77, 705–718 (2020).
3.
Journal Article
de Souza, L. P., Scossa, F., Proost, S., Bitocchi, E., Papa, R., Tohge, T. & Fernie, A. R. Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. The Plant Journal 97, 1132–1153 (2019).
4.
Journal Article
Ferrari, C., Proost, S., Janowski, M., Becker, J., Nikoloski, Z., Bhattacharya, D., Price, D., Tohge, T., Bar-Even, A., Fernie, A. R., Stitt, M. & Mutwil, M. Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 10, (2019).
5.
Journal Article
Flores-Tornero, M., Proost, S., Mutwil, M., Scutt, C. P., Dresselhaus, T. & Sprunck, S. Transcriptomics of manually isolated Amborella trichopoda egg apparatus cells. Plant Reproduction 32, 15–27 (2019).
6.
Journal Article
Rosado-Souza, L., Proost, S., Moulin, M., Bergmann, S., Bocobza, S. E., Aharoni, A., Fitzpatrick, T. B., Mutwil, M., Fernie, A. R. & Obata, T. Appropriate Thiamin Pyrophosphate Levels Are Required for Acclimation to Changes in Photoperiod. Plant Physiology 180, 185–197 (2019).
7.
Journal Article
Janowski, M., Zoschke, R., Scharff, L. B., Martinez-Jaime, S., Ferrari, C., Proost, S., Ng Wei Xiong, J., Omranian, N., Musialak-Lange, M., Nikoloski, Z., Graf, A., Schöttler, M. A., Sampathkumar, A., Vaid, N. & Mutwil, M. AtRsgA from Arabidopsis thaliana is important for maturation of the small subunit of the chloroplast ribosome. The Plant Journal 96, 404–420 (2018).
8.
Journal Article
Ferrari, C., Proost, S., Ruprecht, C. & Mutwil, M. PhytoNet: comparative co-expression network analyses across phytoplankton and land plants. Nucleic Acids Research 46, W76–W83 (2018).
9.
Journal Article
Proost, S. & Mutwil, M. CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses. Nucleic Acids Research 46, W133–W140 (2018).
10.
Journal Article
Proost, S., Krawczyk, A. & Mutwil, M. LSTrAP: efficiently combining RNA sequencing data into co-expression networks. BMC Bioinformatics 18, (2017).
11.
Journal Article
Ruprecht, C., Proost, S., Hernandez-Coronado, M., Ortiz-Ramirez, C., Lang, D., Rensing, S. A., Becker, J. D., Vandepoele, K. & Mutwil, M. Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules. The Plant Journal 90, 447–465 (2017).
12.
Journal Article
Ruprecht, C., Vaid, N., Proost, S., Persson, S. & Mutwil, M. Beyond Genomics: Studying Evolution with Gene Coexpression Networks. Trends in Plant Science 22, 298–307 (2017).
13.
Journal Article
Sibout, R., Proost, S., Hansen, B. O., Vaid, N., Giorgi, F. M., Ho-Yue-Kuang, S., Legee, F., Cezart, L., Bouchabke-Coussa, O., Soulhat, C., Provart, N., Pasha, A., Le Bris, P., Roujol, D., Hofte, H., Jamet, E., Lapierre, C., Persson, S. & Mutwil, M. Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon. New Phytologist 215, 1009–1025 (2017).
14.
Journal Article
Swiadek, M., Proost, S., Sieh, D., Yu, J., Todesco, M., Jorzig, C., Cubillos, A., Plötner, B., Nikoloski, Z., Chae, E., Giavalisco, P., Fischer, A., Schröder, F., Kim, S.-T., Weigel, D. & Laitinen, R. Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 213, 900–915 (2017).
15.
Journal Article
Proost, S. & Mutwil, M. Tools of the trade: studying molecular networks in plants. Current Opinion in Plant Biology 30, 143–150 (2016).
16.
Journal Article
Omidbakhshfard, M. A., Proost, S., Fujikura, U. & Mueller-Roeber, B. Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology. Molecular Plant 8, 998–1010 (2015).
17.
Journal Article
Proost, S., Van Bel, M., Vaneechoutte, D., Van de Peer, Y., Inze, D., Mueller-Roeber, B. & Vandepoele, K. PLAZA 3.0: an access point for plant comparative genomics. Nucleic Acids Research 43, D974–D981 (2015).
18.
Journal Article
Balazadeh, S., Schildhauer, J., Araujo, W. L., Munne-Bosch, S., Fernie, A. R., Proost, S., Humbeck, K. & Mueller-Roeber, B. Reversal of senescence by N resupply to N-starved Arabidopsis thaliana: transcriptomic and metabolomic consequences. Journal of Experimental Botany 65, 3975–3992 (2014).

Book Chapter (1)

19.
Book Chapter
Proost, S. & Mutwil, M. in Plant Genomics Databases: Methods and Protocols (eds. van Dijk & D.J, A.) 1533, 213–227 (Springer New York, 2017).
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