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Journal Article (31)

1.
Journal Article
de Souza, L. P., Alseekh, S., Scossa, F. & Fernie, A. R. Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods (2021). doi:10.1038/s41592-021-01116-4
2.
Journal Article
Scossa, F. & Fernie, A. R. When a Crop Goes Back to the Wild: Feralization. Trends in Plant Science 26, 543–545 (2021).
3.
Journal Article
Gill, R. A., Scossa, F., King, G. J., Golicz, A., Tong, C., Snowdon, R. J., Fernie, A. R. & Liu, S. On the Role of Transposable Elements in the Regulation of Gene Expression and Subgenomic Interactions in Crop Genomes. Critical Reviews in Plant Sciences 40, 157–189 (2021).
4.
Journal Article
Scossa, F., Alseekh, S. & Fernie, A. R. Integrating multi-omics data for crop improvement. Journal of Plant Physiology 257, (2021).
5.
Journal Article
Scossa, F. & Fernie, A. R. Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants? Computational and Structural Biotechnology Journal 19, 1579–1594 (2021).
6.
Journal Article
Zhang, W., Luo, C., Scossa, F., Zhang, Q., Usadel, B., Fernie, A. R., Mei, H. & Wen, W. A phased genome based on single sperm sequencing reveals crossover pattern and complex relatedness in tea plants. The Plant Journal 105, 197–208 (2021).
7.
Journal Article
Alseekh, S., Scossa, F. & Fernie, A. R. Mobile Transposable Elements Shape Plant Genome Diversity. Trends in Plant Science 25, 1062–1064 (2020).
8.
Journal Article
Karagiannis, E., Michailidis, M., Tanou, G., Scossa, F., Sarrou, E., Stamatakis, G., Samiotaki, M., Martens, S., Fernie, A. R. & Molassiotis, A. Decoding altitude-activated regulatory mechanisms occurring during apple peel ripening. Horticulture Research 7, (2020).
9.
Journal Article
Karagiannis, E., Tanou, G., Scossa, F., Samiotaki, M., Michailidis, M., Manioudaki, M., Laurens, F., Job, D., Fernie, A. R., Orsel, M. & Molassiotis, A. Systems-Based Approaches to Unravel Networks and Individual Elements Involved in Apple Superficial Scald. Frontiers in Plant Science 11, (2020).
10.
Journal Article
Scossa, F. & Fernie, A. R. The evolution of metabolism: How to test evolutionary hypotheses at the genomic level. Computational and Structural Biotechnology Journal 18, 482–500 (2020).
11.
Journal Article
Tohge, T., Scossa, F., Wendenburg, R., Frasse, P., Balbo, I., Watanabe, M., Alseekh, S., Jadha, S. S., Delfin, J. C., Lohse, M., Giavalisco, P., Usadel, B., Zhang, Y. J., Luo, J., Bouzayen, M. & Fernie, A. R. Exploiting natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex. Molecular Plant 13, 1027–1046 (2020).
12.
Journal Article
Zhang, W., Zhang, Y., Qiu, H., Guo, Y., Wan, H., Zhang, X., Scossa, F., Alseekh, S., Zhang, Q., Wang, P., Xu, L., Schmidt, M. H.-W., Jia, X., Li, D., Zhu, A., Guo, F., Chen, W., Ni, D., Usadel, B., Fernie, A. R. & Wen, W. Genome assembly of wild tea tree DASZ reveals pedigree and selection history of tea varieties. Nature Communications 11, (2020).
13.
Journal Article
de Souza, L. P., Scossa, F., Proost, S., Bitocchi, E., Papa, R., Tohge, T. & Fernie, A. R. Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. The Plant Journal 97, 1132–1153 (2019).
14.
Journal Article
Scossa, F., Roda, F., Tohge, T., Georgiev, M. I. & Fernie, A. R. The Hot and the Colorful: Understanding the Metabolism, Genetics and Evolution of Consumer Preferred Metabolic Traits in Pepper and Related Species. Critical Reviews in Plant Sciences 38, 339–381 (2019).
15.
Journal Article
Kou, S., Chen, L., Tu, W., Scossa, F., Wang, Y., Liu, J., Fernie, A. R., Song, B. & Xie, C. The arginine decarboxylase gene ADC1, associated to the putrescine pathway, plays an important role in potato cold-acclimated freezing tolerance as revealed by transcriptome and metabolome analyses. The Plant Journal 96, 1283–1298 (2018).
16.
Journal Article
Scossa, F., Benina, M., Alseekh, S., Zhang, Y. J. & Fernie, A. R. The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants. Planta Media 84, 855–873 (2018).
17.
Journal Article
Scossa, F. & Fernie, A. R. How fruit ripening is ENCODEd. Nature Plants 4, 744–745 (2018).
18.
Journal Article
Shnaider, Y., Mitra, D., Miller, G., Baniel, A., Doniger, T., Kuhalskaya, A., Scossa, F., Fernie, A. R., Brotman, Y. & Perl-Treves, R. Cucumber ovaries inhibited by dominant fruit express a dynamic developmental program, distinct from either senescence-determined or fruit-setting ovaries. The Plant Journal 96, 651–669 (2018).
19.
Journal Article
Zhang, Y. J., Swart, C., Alseekh, S., Scossa, F., Jiang, L., Obata, T., Graf, A. & Fernie, A. R. The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions. Plant Physiology 177, 966–979 (2018).
20.
Journal Article
Alseekh, S., Tong, H. (Mathematical Modelling and Systems Biology - Nikoloski, Cooperative Research Groups, Max Planck Institute of Molecular Plant Physiology, Max Planck Society), H., Scossa, F., Brotman, Y., Vigroux, F., Tohge, T., Ofner, I., Zamir, D., Nikoloski, Z. & Fernie, A. R. Canalization of Tomato Fruit Metabolism. Plant Cell 29, 2753–2765 (2017).
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