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Journal Article (19)

1.
Journal Article
Moreno, J. C., Rojas, B. E., Vicente, R., Gorka, M., Matz, T., Kosmacz, M., Peralta-Ariza, J. S., Zhang, Y. J., Alseekh, S., Childs, D., Luzarowski, M., Nikoloski, Z., Zarivach, R., Walther, D., Hartman, M. D., Figueroa, C. M., Iglesias, A. A., Fernie, A. R. & Skirycz, A. Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal (2021). doi:10.15252/embj.2020106800
2.
Journal Article
Cheong, B. E., Beine-Golovchuk, O., Gorka, M., Ho, W. W. H., Martinez-Seidel, F., Firmino, A. A. P., Skirycz, A., Roessner, U. & Kopka, J. Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11, (2021).
3.
Journal Article
Friedrich, T., Oberkofler, V., Trindade, I., Altmann, S., Brzezinka, K., Lämke, J., Gorka, M., Kappel, C., Sokolowska, E., Skirycz, A., Graf, A. & Bäurle, I. Heteromeric HSFA2/HSFA3 complexes drive transcriptional memory after heat stress in Arabidopsis. Nature Communications 12, (2021).
4.
Journal Article
Luzarowski, M., Vicente, R., Kiselev, A., Wagner, M., Schlossarek, D., Erban, A., de Souza, L. P., Childs, D., Wojciechowska, I., Luzarowska, U., Gorka, M., Sokolowska, E., Kosmacz, M., Moreno, J. C., Brzezinska, A., Vegesna, B., Kopka, J., Fernie, A. R., Willmitzer, L., Ewald, J. C. & Skirycz, A. Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4, (2021).
5.
Journal Article
Martinez-Seidel, F., Beine-Golovchuk, O., Hsieh, Y.-C., El Eshraky, K., Gorka, M., Cheong, B.-E., Jimenez‐posada, E. V., Walther, D., Skirycz, A., Roessner, U., Kopka, J. & Firmino, A. A. P. Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22, (2021).
6.
Journal Article
Firmino, A. A. P., Gorka, M., Graf, A., Skirycz, A., Martinez-Seidel, F., Zander, K., Kopka, J. & Beine-Golovchuk, O. Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 9, (2020).
7.
Journal Article
Thirumalaikumar, V. P., Gorka, M., Schulz, K., Masclaux-Daubresse, C., Sampathkumar, A., Skirycz, A., Vierstra, R. D. & Balazadeh, S. Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90 and ROF1. Autophagy (2020). doi:10.1080/15548627.2020.1820778
8.
Journal Article
Urrea Castellanos, R., Friedrich, T., Petrovic, N., Altmann, S., Brzezinka, K., Gorka, M., Graf, A. & Bäurle, I. FORGETTER2 protein phosphatase and phospholipase D modulate heat stress memory in Arabidopsis. The Plant Journal 104, 7–17 (2020).
9.
Journal Article
Burschel, S., Kreuzer Decovic, D., Nuber, F., Stiller, M., Hofmann, M., Zupok, A., Siemiatkowska, B., Gorka, M., Leimkühler, S. & Friedrich, T. Iron-sulfur cluster carrier proteins involved in the assembly of Escherichia coli NADH: ubiquinone oxidoreductase (complex I). Molecular Microbiology 111, 31–45 (2019).
10.
Journal Article
Gorka, M., Swart, C., Siemiatkowska, B., Martínez-Jaime, S., Skirycz, A., Streb, S. & Graf, A. Protein Complex Identification and quantitative complexome by CN-PAGE. Scientific Reports 9, (2019).
11.
Journal Article
Kosmacz, M., Gorka, M., Schmidt, S., Luzarowski, M., Moreno, J. C., Szlachetko, J., Leniak, E., Sokolowska, E., Sofroni, K., Schnittger, A. & Skirycz, A. Protein and metabolite composition of Arabidopsis stress granules. New Phytologist 222, 1420–1433 (2019).
12.
Journal Article
Takahashi, D., Gorka, M., Erban, A., Graf, A., Kopka, J., Zuther, E. & Hincha, D. K. Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana. Scientific Reports 9, (2019).
13.
Journal Article
Zupok, A., Gorka, M., Siemiatkowska, B., Skirycz, A. & Leimkuehler, S. Iron-Dependent Regulation of Molybdenum Cofactor Biosynthesis Genes in Escherichia coli. Journal of Bacteriology 201, (2019).
14.
Journal Article
Kosmacz, M., Luzarowski, M., Kerber, O., Leniak, E., Gutierrez-Beltran, E., Moreno, J. C., Gorka, M., Szlachetko, J., Veyel, D., Graf, A. & Skirycz, A. Interaction of 2 ',3 '-cAMP with Rbp47b Plays a Role in Stress Granule Formation. Plant Physiology 177, 411–421 (2018).
15.
Journal Article
Swart, C., Martínez-Jaime, S., Gorka, M., Zander, K. & Graf, A. Hit-Gel: Streamlining in-gel protein digestion for high-throughput proteomics experiments. Scientific Reports 8, (2018).
16.
Journal Article
Veyel, D., Sokolowska, E., Moreno, J. C., Kierszniowska, S., Cichon, J., Wojciechowska, I., Luzarowski, M., Kosmacz, M., Szlachetko, J., Gorka, M., Meret, M., Graf, A., Meyer, E. H., Willmitzer, L. & Skirycz, A. PROMIS, global analysis of PROtein-metabolite interactions using size separation in Arabidopsis thaliana. The Journal of Biological Chemistry 293, 12440–12453 (2018).
17.
Journal Article
Kabelitz, T., Brzezinka, K., Friedrich, T., Gorka, M., Graf, A., Kappel, C. & Baeurle, I. A JUMONJI Protein with E3 Ligase and Histone H3 Binding Activities Affects Transposon Silencing in Arabidopsis. Plant Physiology 171, 344–358 (2016).
18.
Journal Article
Brzezinka, K., Altmann, S., Czesnick, H., Nicolas, P., Gorka, M., Benke, E., Kabelitz, T., Jähne, F., Graf, A., Kappel, C. & Bäurle, I. Arabidopsis FORGETTER1 mediates stress-induced chromatin memory through nucleosome remodeling. eLife 5, (2016).
19.
Journal Article
Szymanski, W. G., Zauber, H., Erban, A., Gorka, M., Wu, X. N. & Schulze, W. X. Cytoskeletal Components Define Protein Location to Membrane Microdomains. Molecular & cellular proteomics 14, 2493–2509 (2015).

Meeting Abstract (1)

20.
Meeting Abstract
Skeffington, A. W., Fischer, A., Gorka, M., Graf, A. & Scheffel, A. Identifying Proteins important for Coccolith formation in Emiliana huxleyi. in Phycologia 56, 173–174 (International Phycological Society, 2017).
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