Publications of L. P. de Souza

Journal Article (29)

1.
Journal Article
Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D’Auria, J., Ewald, J., C. Ewald, J., Fraser, P. D., Giavalisco, P., Hall, R. D., Heinemann, M., Link, H., Luo, J., Neumann, S., Nielsen, J., de Souza, L. P., Saito, K., Sauer, U., Schroeder, F. C., Schuster, S., Siuzdak, G., Skirycz, A., Sumner, L. W., Snyder, M. P., Tang, H., Tohge, T., Wang, Y., Wen, W., Wu, S., Xu, G., Zamboni, N. & Fernie, A. R. Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Nature Methods 18, 747–756 (2021).
2.
Journal Article
de Souza, L. P., Alseekh, S., Scossa, F. & Fernie, A. R. Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods 18, 733–746 (2021).
3.
Journal Article
Zhang, Y. J., Giese, J., Kerbler, S. M.-L., Siemiatkowska, B., de Souza, L. P., Alpers, J., Medeiros, D. B., Hincha, D. K., Daloso, D. M., Stitt, M., Finkemeier, I. & Fernie, A. R. Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis. Molecular Plant 14, 1104–1118 (2021).
4.
Journal Article
Bottcher, A., Domingues Júnior, A. P., de Souza, L. P., Tohge, T., Araujo, W. L., Fernie, A. R. & Mazzafera, P. Sugarcane cell suspension reveals major metabolic changes under different nitrogen starvation regimes. BRAGANTIA 80, (2021).
5.
Journal Article
Luzarowski, M., Vicente, R., Kiselev, A., Wagner, M., Schlossarek, D., Erban, A., de Souza, L. P., Childs, D., Wojciechowska, I., Luzarowska, U., Gorka, M., Sokolowska, E., Kosmacz, M., Moreno, J. C., Brzezinska, A., Vegesna, B., Kopka, J., Fernie, A. R., Willmitzer, L., Ewald, J. C. & Skirycz, A. Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4, (2021).
6.
Journal Article
Omidbakhshfard, M. A., Sokolowska, E., Di Vittori, V., de Souza, L. P., Kuhalskaya, A., Brotman, Y., Alseekh, S., Fernie, A. R. & Skirycz, A. Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2, (2021).
7.
Journal Article
Feitosa-Araujo, E., da Fonseca Pereira, P., Miranda Pena, M., Medeiros, D. B., de Souza, L. P., Yoshida, T., Weber, A. P. M., Araújo, W. L., Fernie, A. R., Schwarzländer, M. & Nunes-Nesi, A. Changes in intracellular NAD status affect stomatal development in an abscisic acid-dependent manner. The Plant Journal (2020). doi:10.1111/tpj.15000
8.
Journal Article
Alseekh, S., de Souza, L. P., Benina, M. & Fernie, A. R. The Style and Substance of Plant Flavonoid decoration; Towards Defining both Structure and Function. Phytochemistry 174, (2020).
9.
Journal Article
Alves, R. D. F. B., Menezes-Silva, P. E., Sousa, L. F., Loram-Lourenco, L., Silva, M. L. F., Almeida, S. E. S., Silva, F. G., de Souza, L. P., Fernie, A. R. & Farnese, F. S. Evidence of drought memory in Dipteryx alata indicates differential acclimation of plants to savanna conditions. Scientific Reports 10, (2020).
10.
Journal Article
de Souza, L. P., Borghi, M. & Fernie, A. R. Plant single‐cell metabolomics—challenges and perspectives. International Journal of Molecular Sciences 21, 1–17 (2020).
11.
Journal Article
de Souza, L. P., Alseekh, S., Brotman, Y. & Fernie, A. R. Network based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation. Expert Review of Proteomics 17, 243–255 (2020).
12.
Journal Article
de Souza, L. P., Garbowicz, K., Brotman, Y., Tohge, T. & Fernie, A. R. The acetate pathway supports flavonoid and lipid biosynthesis in Arabidopsis. Plant Physiology 182, 857–869 (2020).
13.
Journal Article
Kuhalskaya, A., Wijesingha Ahchige, M., de Souza, L. P., Vallarino, J. G., Brotman, Y. & Alseekh, S. Network analysis provides insight into tomato lipid metabolism. Metabolites 10, (2020).
14.
Journal Article
Salem, M. A., de Souza, L. P., Serag, A., Fernie, A. R., Farag, M. A., Ezzat, S. M. & Alseekh, S. Metabolomics in the Context of Plant Natural Products Research: From Sample Preparation to Metabolite Analysis. Metabolites 10, (2020).
15.
Journal Article
Salem, M. A., Yoshida, T., de Souza, L. P., Alseekh, S., Bajdzienko, K., Fernie, A. R. & Giavalisco, P. An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water-deficit stress. The Plant Journal 103, 1614–1632 (2020).
16.
Journal Article
Domingues Júnior, A. P., Daloso, D. M., Machado, M., Rosado-Souza, L., de Souza, L. P., Fernie, A. R. & Mazzafera, P. A cold change: how short low temperature exposure affects primary metabolism in leaves and stems of two eucalyptus species. Theoretical and Experimental Plant Physiology 31, 429–444 (2019).
17.
Journal Article
de Souza, L. P., Scossa, F., Proost, S., Bitocchi, E., Papa, R., Tohge, T. & Fernie, A. R. Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. The Plant Journal 97, 1132–1153 (2019).
18.
Journal Article
Borghi, M., de Souza, L. P., Yoshida, T. & Fernie, A. R. Flowers and climate change: a metabolic perspective. New Phytologist 224, 1425–1441 (2019).
19.
Journal Article
de Souza, L. P., Alseekh, S., Naake, T. & Fernie, A. R. Mass Spectrometry-Based Untargeted Plant Metabolomics. Current Protocols in Plant Biology 4, (2019).
20.
Journal Article
Lima, V. F., Anjos, L. dos, Medeiros, D. B., Cândido-Sobrinho, S. A., de Souza, L. P., Gago, J., Fernie, A. R. & Daloso, D. M. The sucrose-to-malate ratio correlates with the faster CO2 and light stomatal responses of angiosperms compared to ferns. New Phytologist 223, 1873–1887 (2019).
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