Publications of L. P. de Souza

Journal Article (36)

1.
Journal Article
de Souza, L. P., Naake, T. & Fernie, A. R. Computational approaches that aid annotation in metabolomics. Trends in Plant Science 27, 1077–1078 (2022).
2.
Journal Article
Borghi, M., de Souza, L. P., Tohge, T., Mi, J. N., Melandri, G., Proost, S., Martins, M. C. M., Al-Babili, S., Bouwmeester, H. J. & Fernie, A. R. High-energy-level metabolism and transport occur at the transition from closed to open flowers. Plant Physiology 190, 319–339 (2022).
3.
Journal Article
Rivas, F. J. M., Blanco-Portales, R., Molina-Hidalgo, F. J., Caballero, J. L., de Souza, L. P., Alseekh, S., Fernie, A. R., Munoz-Blanco, J. & Rodriguez-Franco, A. Azacytidine arrests ripening in cultivated strawberry (Fragaria x ananassa) by repressing key genes and altering hormone contents. BMC Plant Biology 22, (2022).
4.
Journal Article
Simeoni, F., Skirycz, A., Simoni, L., Castorina, G., de Souza, L. P., Fernie, A. R., Alseekh, S., Giavalisco, P., Conti, L., Tonelli, C. & Galbiati, M. The AtMYB60 transcription factor regulates stomatal opening by modulating oxylipin synthesis in guard cells. Scientific Reports 12, (2022).
5.
Journal Article
Candido-Sobrinho, S., Lima, V., Freire, F., de Souza, L. P., Gago, J., Fernie, A. R. & Daloso, D. M. Metabolism-mediated mechanisms underpin the differential stomatal speediness regulation among ferns and angiosperms. Plant, Cell and Environment 45, 296–311 (2021).
6.
Journal Article
Machado, M., Vaz, M. G. M. V., Bromke, M. A., Rosa, R. M., Covell, L., de Souza, L. P., Rocha, D. I., Martins, M. A., Araújo, W. L., Szymański, J. & Nunes-Nesi, A. Metabolic stability of freshwater Nitzschia palea strains under silicon stress associated with triacylglycerol accumulation. Algal Research 60, (2021).
7.
Journal Article
Wang, J. Y., Alseekh, S., Xiao, T., Ablazov, A., de Souza, L. P., Fiorilli, V., Anggarani, M., Lin, P.-Y., Votta, C., Novero, M., Jamil, M., Lanfranco, L., Hsing, Y.-I. C., Blilou, I., Fernie, A. & Al-Babili, S. Multi-omics approaches explain the growth-promoting effect of the apocarotenoid growth regulator zaxinone in rice. Communications Biology 4, (2021).
8.
Journal Article
Alseekh, S., Aharoni, A., Brotman, Y., Contrepois, K., D’Auria, J., Ewald, J., C. Ewald, J., Fraser, P. D., Giavalisco, P., Hall, R. D., Heinemann, M., Link, H., Luo, J., Neumann, S., Nielsen, J., de Souza, L. P., Saito, K., Sauer, U., Schroeder, F. C., Schuster, S., Siuzdak, G., Skirycz, A., Sumner, L. W., Snyder, M. P., Tang, H., Tohge, T., Wang, Y., Wen, W., Wu, S., Xu, G., Zamboni, N. & Fernie, A. R. Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices. Nature Methods 18, 747–756 (2021).
9.
Journal Article
de Souza, L. P., Alseekh, S., Scossa, F. & Fernie, A. R. Ultra-high-performance liquid chromatography high-resolution mass spectrometry variants for metabolomics research. Nature Methods 18, 733–746 (2021).
10.
Journal Article
Zhang, Y. J., Giese, J., Kerbler, S. M.-L., Siemiatkowska, B., de Souza, L. P., Alpers, J., Medeiros, D. B., Hincha, D. K., Daloso, D. M., Stitt, M., Finkemeier, I. & Fernie, A. R. Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis. Molecular Plant 14, 1104–1118 (2021).
11.
Journal Article
Bottcher, A., Domingues Júnior, A. P., de Souza, L. P., Tohge, T., Araujo, W. L., Fernie, A. R. & Mazzafera, P. Sugarcane cell suspension reveals major metabolic changes under different nitrogen starvation regimes. BRAGANTIA 80, (2021).
12.
Journal Article
Luzarowski, M., Vicente, R., Kiselev, A., Wagner, M., Schlossarek, D., Erban, A., de Souza, L. P., Childs, D., Wojciechowska, I., Luzarowska, U., Gorka, M., Sokolowska, E., Kosmacz, M., Moreno, J. C., Brzezinska, A., Vegesna, B., Kopka, J., Fernie, A. R., Willmitzer, L., Ewald, J. C. & Skirycz, A. Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4, (2021).
13.
Journal Article
Omidbakhshfard, M. A., Sokolowska, E., Di Vittori, V., de Souza, L. P., Kuhalskaya, A., Brotman, Y., Alseekh, S., Fernie, A. R. & Skirycz, A. Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2, (2021).
14.
Journal Article
Feitosa-Araujo, E., da Fonseca Pereira, P., Miranda Pena, M., Medeiros, D. B., de Souza, L. P., Yoshida, T., Weber, A. P. M., Araújo, W. L., Fernie, A. R., Schwarzländer, M. & Nunes-Nesi, A. Changes in intracellular NAD status affect stomatal development in an abscisic acid-dependent manner. The Plant Journal (2020). doi:10.1111/tpj.15000
15.
Journal Article
Alseekh, S., de Souza, L. P., Benina, M. & Fernie, A. R. The Style and Substance of Plant Flavonoid decoration; Towards Defining both Structure and Function. Phytochemistry 174, (2020).
16.
Journal Article
Alves, R. D. F. B., Menezes-Silva, P. E., Sousa, L. F., Loram-Lourenco, L., Silva, M. L. F., Almeida, S. E. S., Silva, F. G., de Souza, L. P., Fernie, A. R. & Farnese, F. S. Evidence of drought memory in Dipteryx alata indicates differential acclimation of plants to savanna conditions. Scientific Reports 10, (2020).
17.
Journal Article
de Souza, L. P., Alseekh, S., Brotman, Y. & Fernie, A. R. Network based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation. Expert Review of Proteomics 17, 243–255 (2020).
18.
Journal Article
de Souza, L. P., Borghi, M. & Fernie, A. R. Plant single‐cell metabolomics—challenges and perspectives. International Journal of Molecular Sciences 21, 1–17 (2020).
19.
Journal Article
de Souza, L. P., Garbowicz, K., Brotman, Y., Tohge, T. & Fernie, A. R. The acetate pathway supports flavonoid and lipid biosynthesis in Arabidopsis. Plant Physiology 182, 857–869 (2020).
20.
Journal Article
Kuhalskaya, A., Wijesingha Ahchige, M., de Souza, L. P., Vallarino, J. G., Brotman, Y. & Alseekh, S. Network analysis provides insight into tomato lipid metabolism. Metabolites 10, (2020).
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