Publications of M. Gorka

Journal Article (25)

1.
Journal Article
Abrar Hasnat, M., Zupok, A., Gorka, M., Iobbi-Nivol, C., Skirycz, A., Jourlin-Castelli, C., Bier, F., Agarwal, S., Irefo, E. & Leimkühler, S. Iron limitation indirectly reduces the Escherichia coli torCAD operon expression by a reduction of molybdenum cofactor availability. Microbiology Spectrum 12, (2024).
2.
Journal Article
Skeffington, A. W., Fischer, A., Sviben, S., Brzezinka , M., Gorka, M., Bertinetti, L., Woehle, C., Huettel, B., Graf, A. & Scheffel, A. A joint proteomic and genomic investigation provides insights into the mechanism of calcification in coccolithophores. Nature Communications 14, (2023).
3.
Journal Article
Kosmacz, M., Kerber, O., Gorka, M., Moreno, J. C., Maruri-Lopez, I., Minen, R. I., Sampathkumar, A., Nelson, A. D. L. & Skirycz, A. 2 ',3 '-cAMP treatment mimics the stress molecular response in Arabidopsis thaliana. Plant Physiology 188, 1966–1978 (2022).
4.
Journal Article
Aarabi, F., Rakpenthai, A., Barahimipour, R., Gorka, M., Alseekh, S., Zhang, Y. J., Salem, M. A., Brückner, F., Omranian, N., Watanabe, M., Nikoloski, Z., Giavalisco, P., Tohge, T., Graf, A., Fernie, A. R. & Hoefgen, R. Sulfur Deficiency Induced genes affect seed protein accumulation and composition under sulfate deprivation. Plant Physiology 187, 2419–2434 (2021).
5.
Journal Article
Schlossarek, D., Luzarowski, M., Sokolowska, E., Gorka, M., Willmitzer, L. & Skirycz, A. PROMISed: A novel web-based tool to facilitate analysis and visualization of the molecular interaction networks from co-fractionation mass spectrometry (CF-MS) experiments. Computational and Structural Biotechnology Journal 19, 5117–5125 (2021).
6.
Journal Article
Moreno, J. C., Rojas, B. E., Vicente, R., Gorka, M., Matz, T., Kosmacz, M., Peralta-Ariza, J. S., Zhang, Y. J., Alseekh, S., Childs, D., Luzarowski, M., Nikoloski, Z., Zarivach, R., Walther, D., Hartman, M. D., Figueroa, C. M., Iglesias, A. A., Fernie, A. R. & Skirycz, A. Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal 40, (2021).
7.
Journal Article
Cheong, B. E., Beine-Golovchuk, O., Gorka, M., Ho, W. W. H., Martinez-Seidel, F., Firmino, A. A. P., Skirycz, A., Roessner, U. & Kopka, J. Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11, (2021).
8.
Journal Article
Friedrich, T., Oberkofler, V., Trindade, I., Altmann, S., Brzezinka, K., Lämke, J., Gorka, M., Kappel, C., Sokolowska, E., Skirycz, A., Graf, A. & Bäurle, I. Heteromeric HSFA2/HSFA3 complexes drive transcriptional memory after heat stress in Arabidopsis. Nature Communications 12, (2021).
9.
Journal Article
Ginsawaeng, O., Gorka, M., Erban, A., Heise, C., Brueckner, F., Hoefgen, R., Kopka, J., Skirycz, A., Hincha, D. K. & Zuther, E. Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. International Journal of Molecular Sciences 22, (2021).
10.
Journal Article
Luzarowski, M., Vicente, R., Kiselev, A., Wagner, M., Schlossarek, D., Erban, A., de Souza, L. P., Childs, D., Wojciechowska, I., Luzarowska, U., Gorka, M., Sokolowska, E., Kosmacz, M., Moreno, J. C., Brzezinska, A., Vegesna, B., Kopka, J., Fernie, A. R., Willmitzer, L., Ewald, J. C. & Skirycz, A. Global mapping of protein–metabolite interactions in Saccharomyces cerevisiae reveals that Ser-Leu dipeptide regulates phosphoglycerate kinase activity. Communications Biology 4, (2021).
11.
Journal Article
Martinez-Seidel, F., Beine-Golovchuk, O., Hsieh, Y.-C., El Eshraky, K., Gorka, M., Cheong, B.-E., Jimenez‐posada, E. V., Walther, D., Skirycz, A., Roessner, U., Kopka, J. & Firmino, A. A. P. Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis. International Journal of Molecular Sciences 22, (2021).
12.
Journal Article
Firmino, A. A. P., Gorka, M., Graf, A., Skirycz, A., Martinez-Seidel, F., Zander, K., Kopka, J. & Beine-Golovchuk, O. Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 9, (2020).
13.
Journal Article
Thirumalaikumar, V. P., Gorka, M., Schulz, K., Masclaux-Daubresse, C., Sampathkumar, A., Skirycz, A., Vierstra, R. D. & Balazadeh, S. Selective autophagy regulates heat stress memory in Arabidopsis by NBR1-mediated targeting of HSP90 and ROF1. Autophagy 19, 2184–2199 (2020).
14.
Journal Article
Urrea Castellanos, R., Friedrich, T., Petrovic, N., Altmann, S., Brzezinka, K., Gorka, M., Graf, A. & Bäurle, I. FORGETTER2 protein phosphatase and phospholipase D modulate heat stress memory in Arabidopsis. The Plant Journal 104, 7–17 (2020).
15.
Journal Article
Burschel, S., Kreuzer Decovic, D., Nuber, F., Stiller, M., Hofmann, M., Zupok, A., Siemiatkowska, B., Gorka, M., Leimkühler, S. & Friedrich, T. Iron-sulfur cluster carrier proteins involved in the assembly of Escherichia coli NADH: ubiquinone oxidoreductase (complex I). Molecular Microbiology 111, 31–45 (2019).
16.
Journal Article
Gorka, M., Swart, C., Siemiatkowska, B., Martínez-Jaime, S., Skirycz, A., Streb, S. & Graf, A. Protein Complex Identification and quantitative complexome by CN-PAGE. Scientific Reports 9, (2019).
17.
Journal Article
Kosmacz, M., Gorka, M., Schmidt, S., Luzarowski, M., Moreno, J. C., Szlachetko, J., Leniak, E., Sokolowska, E., Sofroni, K., Schnittger, A. & Skirycz, A. Protein and metabolite composition of Arabidopsis stress granules. New Phytologist 222, 1420–1433 (2019).
18.
Journal Article
Takahashi, D., Gorka, M., Erban, A., Graf, A., Kopka, J., Zuther, E. & Hincha, D. K. Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana. Scientific Reports 9, (2019).
19.
Journal Article
Zupok, A., Gorka, M., Siemiatkowska, B., Skirycz, A. & Leimkuehler, S. Iron-Dependent Regulation of Molybdenum Cofactor Biosynthesis Genes in Escherichia coli. Journal of Bacteriology 201, (2019).
20.
Journal Article
Kosmacz, M., Luzarowski, M., Kerber, O., Leniak, E., Gutierrez-Beltran, E., Moreno, J. C., Gorka, M., Szlachetko, J., Veyel, D., Graf, A. & Skirycz, A. Interaction of 2 ',3 '-cAMP with Rbp47b Plays a Role in Stress Granule Formation. Plant Physiology 177, 411–421 (2018).
Go to Editor View