Publications of T. Naake

de Souza, L. P., Naake, T. & Fernie, A. R. Computational approaches that aid annotation in metabolomics. Trends in Plant Science 27, 1077–1078 (2022).

Zhu, F., Alseekh, S., Koper, K., Tong, H., Nikoloski, Z., Naake, T., Liu, H., Yan, J., Brotman, Y., Wen, W., Maeda, H., Cheng, Y. & Fernie, A. R. Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis. The Plant Cell 34, 557–578 (2021).

Aneklaphakij, C., Saigo, T., Watanabe, M., Naake, T., Fernie, A. R., Bunsupa, S., Satitpatipan, V. & Tohge, T. Diversity of Chemical Structures and Biosynthesis of Polyphenols in Nut-Bearing Species. Frontiers in Plant Science 12, (2021).

Yan, S., Liu, Q., Naake, T., Huang, W., Chen, M., Kong, Q., Zhang, S., Li, W., Li, X., Liu, Q., Yang, J., Fernie, A. R. & Liu, B. OsGF14b modulates defense signaling pathways in rice panicle blast response. Crop Journal 9, 725–738 (2021).

Naake, T., Maeda, H. A., Proost, S., Tohge, T. & Fernie, A. R. Kingdom-wide analysis of the evolution of the plant type III polyketide synthase superfamily. Plant Physiology (2020). doi:10.1093/plphys/kiaa086

de Souza, L. P., Alseekh, S., Naake, T. & Fernie, A. R. Mass Spectrometry-Based Untargeted Plant Metabolomics. Current Protocols in Plant Biology 4, (2019).

Naake, T. & Fernie, A. R. MetNet: Metabolite Network Prediction from High-Resolution Mass Spectrometry Data in R Aiding Metabolite Annotation. Analytical Chemistry 91, 1768–1772 (2019).

Stanstrup, J., Broeckling, C. D., Helmus, R., Hoffmann, N., Mathé, E., Naake, T., Nicolotti, L., Peters, K., Rainer, J., Salek, R. M., Schulze, T., Schymanski, E. L., Stravs, M. A., Thévenot, E. A., Treutler, H., Weber, R. J. M., Willighagen, E., Witting, M. & Neumann, S. The metaRbolomics Toolbox in Bioconductor and beyond. Metabolites 9, (2019).

Naake, T., Gaquerel, E. & Fernie, A. R. in Computational Methods and Data Analysis for Metabolomics (ed. Li, S.) 209–225 (Springer US, 2020). doi:10.1007/978-1-0716-0239-3_12

Aarabi, F., Naake, T., Fernie, A. R. & Hoefgen, R. Coordinating Sulfur Pools under Sulfate Deprivation. Trends in Plant Science 25, 1227–1239 (2020).

Toleco, M. R., Naake, T., Zhang, Y. J., Heazlewood, J. L. & Fernie, A. R. Plant Mitochondrial Carriers: Molecular Gatekeepers That Help to Regulate Plant Central Carbon Metabolism. Plants 9, (2020).

de Souza, L. P., Naake, T., Tohge, T. & Fernie, A. R. From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics. GigaScience 6, 1–20 (2017).