Publications of T. Naake

Journal Article (8)

Journal Article
de Souza, L. P., Naake, T. & Fernie, A. R. Computational approaches that aid annotation in metabolomics. Trends in Plant Science 27, 1077–1078 (2022).
Journal Article
Zhu, F., Alseekh, S., Koper, K., Tong, H., Nikoloski, Z., Naake, T., Liu, H., Yan, J., Brotman, Y., Wen, W., Maeda, H., Cheng, Y. & Fernie, A. R. Genome-wide association of the metabolic shifts underpinning dark-induced senescence in Arabidopsis. The Plant Cell 34, 557–578 (2021).
Journal Article
Aneklaphakij, C., Saigo, T., Watanabe, M., Naake, T., Fernie, A. R., Bunsupa, S., Satitpatipan, V. & Tohge, T. Diversity of Chemical Structures and Biosynthesis of Polyphenols in Nut-Bearing Species. Frontiers in Plant Science 12, (2021).
Journal Article
Yan, S., Liu, Q., Naake, T., Huang, W., Chen, M., Kong, Q., Zhang, S., Li, W., Li, X., Liu, Q., Yang, J., Fernie, A. R. & Liu, B. OsGF14b modulates defense signaling pathways in rice panicle blast response. Crop Journal 9, 725–738 (2021).
Journal Article
Naake, T., Maeda, H. A., Proost, S., Tohge, T. & Fernie, A. R. Kingdom-wide analysis of the evolution of the plant type III polyketide synthase superfamily. Plant Physiology (2020). doi:10.1093/plphys/kiaa086
Journal Article
de Souza, L. P., Alseekh, S., Naake, T. & Fernie, A. R. Mass Spectrometry-Based Untargeted Plant Metabolomics. Current Protocols in Plant Biology 4, (2019).
Journal Article
Naake, T. & Fernie, A. R. MetNet: Metabolite Network Prediction from High-Resolution Mass Spectrometry Data in R Aiding Metabolite Annotation. Analytical Chemistry 91, 1768–1772 (2019).
Journal Article
Stanstrup, J., Broeckling, C. D., Helmus, R., Hoffmann, N., Mathé, E., Naake, T., Nicolotti, L., Peters, K., Rainer, J., Salek, R. M., Schulze, T., Schymanski, E. L., Stravs, M. A., Thévenot, E. A., Treutler, H., Weber, R. J. M., Willighagen, E., Witting, M. & Neumann, S. The metaRbolomics Toolbox in Bioconductor and beyond. Metabolites 9, (2019).

Book Chapter (1)

Book Chapter
Naake, T., Gaquerel, E. & Fernie, A. R. in Computational Methods and Data Analysis for Metabolomics (ed. Li, S.) 209–225 (Springer US, 2020). doi:10.1007/978-1-0716-0239-3_12

Review Article (3)

Review Article
Aarabi, F., Naake, T., Fernie, A. R. & Hoefgen, R. Coordinating Sulfur Pools under Sulfate Deprivation. Trends in Plant Science 25, 1227–1239 (2020).
Review Article
Toleco, M. R., Naake, T., Zhang, Y. J., Heazlewood, J. L. & Fernie, A. R. Plant Mitochondrial Carriers: Molecular Gatekeepers That Help to Regulate Plant Central Carbon Metabolism. Plants 9, (2020).
Review Article
de Souza, L. P., Naake, T., Tohge, T. & Fernie, A. R. From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics. GigaScience 6, 1–20 (2017).
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