Fernie, A. R.: Editorial overview - the Computational approaches in aid of advancing understanding in Plant Physiology. Frontiers in Plant Science 2, p. 78 (2011)

Gupta, K. J.; Hincha, D. K.; Mur, L. A. J.: NO way to treat a cold. New Phytologist 189 (2), pp. 360 - 363 (2011)

Brotman, Y.; Gupta, K. J.; Viterbo, A.: Trichoderma. Current Biology 20 (9), pp. R390 - R391 (2010)

Stitt, M.; Sulpice, R.; Keurentjes, J.: Metabolic Networks: How to Identify Key Components in the Regulation of Metabolism and Growth. Plant Physiology 152 (2), pp. 428 - 444 (2010)

Mueller-Roeber, B.; Arvidsson, S.: Fertility control: the role of magnesium transporters in pollen development. Cell Research 19 (7), pp. 800 - 801 (2009)

Selbig, J.; Steinfath, M.; Repsilber, D.: Network structure and biological function: reconstruction, modeling, and statistical approaches. EURASIP Journal on Bioinformatics and Systems Biology, p. 714985 (2009)

Guy, C.; Kopka, J.; Moritz, T.: Plant metabolomics coming of age. Physiologia Plantarum 132 (2), pp. 113 - 116 (2008)

Udvardi, M. K.; Scheible, W.-R.: GRAS genes and the symbiotic Green Revolution. Science 308 (5729), pp. 1749 - 1750 (2005)

Benning, C.; Stitt, M.: Physiology and metabolism reacting to the full complexity of metabolic pathways in a postgenomic era. Current Opinion in Plant Biology 7 (3), pp. 231 - 234 (2004)

Kopka, J.; Fernie, A. R.; Weckwerth, W.; Gibon, Y.; Stitt, M.: Metabolite profiling in plant biology: platforms and destinations. Genome Biology 5 (6), p. 109 (2004)

Doermann, P.: Corn with enhanced antioxidant potential. Nature Biotechnology 21 (9), pp. 1015 - 1016 (2003)

Knight, M.; Marahiel, M. A.; Davies, P. L.; Shanks, I. A.; Hincha, D. K.: Coping with the cold: the cold shock response in the Gram-positive soil bacterium Bacillus subtilis - Discussion. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences 357 (1423), pp. 906 - 907 (2002)

Kutozov, M.; Knight, M. R.; Marahiel, M. A.; Hincha, D. K.; Davies, P. L.; Quick, P.; Laybourn-Parry, J.: Signal transduction leading to low-temperature tolerance in Arabidopsis thaliana - Discussion. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES 357 (1423), pp. 874 - 875 (2002)

Stitt, M.: Imaging of metabolites by using a fusion protein between a periplasmic binding protein and GFP derivatives: From a chimera to a view of reality. Proceedings of the National Academy of Sciences of the United States of America 99 (15), pp. 9614 - 9616 (2002)

Last, R.; Willmitzer, L.: Physiology and metabolism. Current Opinion in Plant Biology 4 (3), pp. 179 - 180 (2001)

Kraemer, U.: Cadmium for all meals - plants with an unusual appetite. New Phytologist 145 (1), pp. 1 - 3 (2000)

Trethewey, R. N.; Krotzky, A. J.; Willmitzer, L.: Metabolic profiling: a Rosetta Stone for genomics? Current Opinion in Plant Biology 2 (2), pp. 83 - 85 (1999)

Willmitzer, L.: Plant biotechnology: output traits - the second generation of plant biotechnology products is gaining momentum - Overview. Current Opinion in Biotechnology 10 (2), pp. 161 - 162 (1999)

Siedow, J. N.; Stitt, M.: Plant metabolism: where are all those pathways leading us? Editorial overview. Current Opinion in Plant Biology 1 (3), pp. 197 - 200 (1998)

Stitt, M.: Plasmodesmata Play an Essential Role in Sucrose Export from Leaves - a Step toward an Integration of Metabolic Biochemistry and Cell Biology. Plant Cell 8 (4), pp. 565 - 571 (1996)

Bar-Even, A.; Milo, R.; Noor, E.; Yishai, O.: Use of the reductive glycine pathway for generating formatotrophic and autotrophic microorganisms. (2013)

Milo, R.; Bar-Even, A.; Noor, E.: Enzymatic systems for carbon fixation and methods of generating same. WO2011099006A2 (2011)

Saplaoura, E.; Perrera, V.; Kragler, F.: Methylated RNA Immunoprecipitation Assay to Study m5C Modification in Arabidopsis. (2020)

Wang, Y.; Sampathkumar, A.: Live Cell Imaging of Microtubule Cytoskeleton and Micromechanical Manipulation of the Arabidopsis Shoot Apical Meristem. (2020)

Mubeen, U.; Giraldi, L.A.; Jueppner, J.; Giavalisco, P.: A Multi-Omics Extraction Method for the In-Depth Analysis of Synchronized Cultures of the Green Alga Chlamydomonas reinhardtii. (2019)

Luzarowski, M.; Wojciechowska, I.; Skirycz, A.: 2 in 1: One-step Affinity Purification for the Parallel Analysis of Protein-Protein and Protein-Metabolite Complexes. (2018)

Salem, M.A.; Bernach, M.; Bajdzienko, K.; Giavalisco, P.: A Simple Fractionated Extraction Method for the Comprehensive Analysis of Metabolites, Lipids, and Proteins from a Single Sample. (2017)

Stitt, M.: How Do Plants Regulate Their Behavior Based on Their Carbohydrate Resources? (2017)

Yu, Y.; Fotopoulos, V.; Zhou, K.; Fernie, A. R.: The role of gasotransmitter hydrogen sulfide in plant cadmium stress responses. Trends in Plant Science 30 (1), pp. 35 - 53 (2025)

Bulut, M.: Chemodiversity of sulfur-containing metabolites emphasizing the ecophysiology of Allium plants and the developmental innovations in bulb formation. Current Opinion in Plant Biology 85, 102724 (2025)

Fettke, J.; Fernie, A. R.: Do storage reserves contribute to plant phenotypic plasticity? Trends in Plant Science 30 (4), pp. 364 - 372 (2025)

Nievergelt, A. P.: Genome editing in the green alga Chlamydomonas: past, present practice and future prospects. The Plant Journal 122 (1), e70140 (2025)

Arend, M.; Paulitz, E.; Hsieh, Y.; Nikoloski, Z.: Scaling metabolic model reconstruction up to the pan-genome level: A systematic review and prospective applications to photosynthetic organisms. Metabolic Engineering 90, pp. 67 - 77 (2025)

Bulut, M.; Karakas, E.; Fernie, A. R.: Metabolic responses to multi-stress: An update. Plant Stress 15, 100729 (2025)

Bulut, M.; Karakas, E.; Fernie, A. R.: Adjustments of plant primary metabolism in the face of climate change. Journal of Experimental Botany, eraf116 (2025)

de Oliveira, H.O.; Siqueira, J.A.; Medeiros, D.B.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W.L.: Harnessing the dynamics of plant organic acids metabolism following abiotic stresses. Plant Physiology and Biochemistry 220, 109465 (2025)

Jahan, T.; Huda, M.N.; Zhang, K.; He, Y.; Lai, D.; Dhami, N.; Quinet, M.; Ali, M.A.; Kreft, I.; Woo, S.-H. et al.; Georgiev, M.I.; Fernie, A. R.; Zhou, M.: Plant secondary metabolites against biotic stresses for sustainable crop protection. Biotechnology Advances 79, 108520 (2025)

Marzban, N.; Psarianos, M.; Herrmann, C.; Schulz-Nielsen, L.; Olszewska-Widdrat, A.; Arefi, A.; Pecenka, R.; Grundmann, P.; Schlüter, O. K.; Hoffmann, T. et al.; Rotter, V. S.; Nikoloski, Z.; Sturm, B.: Smart integrated biorefineries in bioeconomy: A concept toward zero-waste, emission reduction, and self-sufficient energy production. Biofuel Research Journal 12 (1), pp. 2319 - 2349 (2025)

Zhao, Z.; Fernie, A. R.; Zhang, Y.: Engineering nitrogen and carbon fixation for next-generation plants. Current Opinion in Plant Biology 85, 102699 (2025)

Liu, H.-J.; Liu, J.; Zhai, Z.; Dai, M.; Tian, F.; Wu, Y.; Tang, J.; Lu, Y.; Wang, H.; Jackson, D. et al.; Yang, X.; Qin, F.; Xu, M.; Fernie, A. R.; Zhang, Z.; Yan, J.: Maize2035: A decadal vision for intelligent maize breeding. Molecular Plant 18 (2), pp. 313 - 332 (2025)

Qin, K.; Ye, X.; Luo, S.; Fernie, A. R.; Zhang, Y.: Engineering carbon assimilation in plants. Journal of Integrative Plant Biology (2025)

Petersen, M.; Avin-Wittenberg, T.; Bassham, D. C.; Dagdas, Y.; Fan, C.; Fernie, A. R.; Jiang, L.; Mishra, D.; Otegui, M. S.; Rodriguez, E. et al.; Hofius, D.: Autophagy in plants. Autophagy Reports 3 (1), 2395731 (2024)

Sartagoda, K.J.D.; Tiozon, R. J. N.; Sreenivasulu, N.: Cereal-based proteins: Bridging health, sustainability, and future innovations for food industries. Journal of Food Composition and Analysis 136, 106720 (2024)

Tiozon, R. J. N.; Lenaerts, B.; Kor, S.; Demont, M.; Fernie, A. R.; Sreenivasulu, N.: Low glycemic index rice: a healthier diet for countering diabetes epidemic in Asia. Trends in Plant Science (2024)

Ye, X.; Qin, K.; Fernie, A. R.; Zhang, Y.: Prospects for synthetic biology in 21st Century agriculture. International Journal of Genetics and Genomics (2024)

de Vries, J.; de Vries, S.; Fernie, A. R.: Current and future perspectives for enhancing our understanding of the evolution of plant metabolism. Philosophical Transactions B 379 (1914), 20240253 (2024)

Delaux, P.; Gutjahr, C.: Evolution of small molecule-mediated regulation of arbuscular mycorrhiza symbiosis. Philosophical Transactions B 379 (1914), 20230369 (2024)

Fernie, A. R.; de Vries, S.; de Vries, J.: Evolution of plant metabolism: the state-of-the-art. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 379 (1914), 20230347 (2024)

Fernie, A. R.; Liu, F.; Zhang, Y.: Post-genomic illumination of paclitaxel biosynthesis. Nature Plants 10, pp. 1875 - 1885 (2024)

Sun, Y.; Yuan, H.; Fernie, A. R.: Harnessing plant-associated microorganism to alleviate the detrimental effects of environmental abiotic stresses on medicinal plants. Medicinal Plant Biology 3, e024 (2024)