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Journal Article (177)

1.
Journal Article
Adhikari, E.; Lee, D. K.; Giavalisco, P.; Sieburth, L. E.: Long-Distance Signaling in bypass1 Mutants: Bioassay Development Reveals the bps Signal to Be a Metabolite. Molecular Plant 6 (1), pp. 164 - 173 (2013)
2.
Journal Article
Agudelo-Romero, P.; Erban, A.; Sousa, L.; Pais, M. S.; Kopka, J.; Fortes, A. M.: Search for Transcriptional and Metabolic Markers of Grape Pre-Ripening and Ripening and Insights into Specific Aroma Development in Three Portuguese Cultivars. PLoS One 8 (4), e60422 (2013)
3.
Journal Article
Alseekh, S.; Ofner, I.; Pleban, T.; Tripodi, P.; Di Dato, F.; Cammareri, M.; Mohammad, A.; Grandillo, S.; Fernie, A. R.; Zamir, D.: Resolution by recombination: breaking up Solanum pennellii introgressions. Trends in Plant Science 18 (10), pp. 536 - 538 (2013)
4.
Journal Article
Angel Torres, M.; Morales, J.; Sanchez-Rodriguez, C.; Molina, A.; Dangl, J. L.: Functional Interplay Between Arabidopsis NADPH Oxidases and Heterotrimeric G Protein. Molecular Plant-Microbe Interactions 26 (6), pp. 686 - 694 (2013)
5.
Journal Article
Antonio, C.; Mustafa, N. R.; Osorio, S.; Tohge, T.; Giavalisco, P.; Willmitzer, L.; Rischer, H.; Oksman-Caldentey, K. M.; Verpoorte, R.; Fernie, A. R.: Analysis of the interface between primary and secondary metabolism in Catharanthus roseus cell cultures using 13C-stable isotope feeding and coupled mass spectrometry. Molecular Plant 6 (2), pp. 581 - 584 (2013)
6.
Journal Article
Araujo, W. L.; Trofimova, L.; Mkrtchyan, G.; Steinhauser, D.; Krall, L.; Graf, A.; Fernie, A. R.; Bunik, V. I.: On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in amino acid metabolism. Amino Acids 44 (2), pp. 683 - 700 (2013)
7.
Journal Article
Archacki, R.; Buszewicz, D.; Sarnowski, T. J.; Sarnowska, E.; Rolicka, A. T.; Tohge, T.; Fernie, A. R.; Jikumaru, Y.; Kotlinski, M.; Iwanicka-Nowicka, R. et al.; Kalisiak, K.; Patryn, J.; Halibart-Puzio, J.; Kamiya, Y.; Davis, S. J.; Koblowska, M. K.; Jerzmanowski, A.: BRAHMA ATPase of the SWI/SNF Chromatin Remodeling Complex Acts as a Positive Regulator of Gibberellin-Mediated Responses in Arabidopsis. PLoS One 8 (3), e58588 (2013)
8.
Journal Article
Armbruster, U.; Labs, M.; Pribil, M.; Viola, S.; Xu, W.; Scharfenberg, M.; Hertle, A. P.; Rojahn, U.; Jensen, P. E.; Rappaport, F. et al.; Joliot, P.; Doermann, P.; Wanner, G.; Leister, D.: Arabidopsis CURVATURE THYLAKOID1 Proteins Modify Thylakoid Architecture by Inducing Membrane Curvature. The Plant Cell 25 (7), pp. 2661 - 2678 (2013)
9.
Journal Article
Armbruster, U.; Ruehle, T.; Kreller, R.; Strotbek, C.; Zuehlke, J.; Tadini, L.; Blunder, T.; Hertle, A. P.; Qi, Y.; Rengstl, B. et al.; Nickelsen, J.; Frank, W.; Leister, D.: The PHOTOSYNTHESIS AFFECTED MUTANT68-LIKE Protein Evolved from a PSII Assembly Factor to Mediate Assembly of the Chloroplast NAD(P)H Dehydrogenase Complex in Arabidopsis. The Plant Cell 25 (10), pp. 3926 - 3943 (2013)
10.
Journal Article
Arnold, A.; Nikoloski, Z.: Comprehensive classification and perspective for modelling photorespiratory metabolism. Plant Biology 15 (4), pp. 667 - 675 (2013)
11.
Journal Article
Bar-Even, A.: Does acetogenesis really require especially low reduction potential? Biochimica et Biophysica Acta-Bioenergetics 1827 (3), pp. 395 - 400 (2013)
12.
Journal Article
Bar-Even, A.; Noor, E.; Flamholz, A.; Milo, R.: Design and analysis of metabolic pathways supporting formatotrophic growth for electricity-dependent cultivation of microbes. SI 1827 (8-9), pp. 1039 - 1047 (2013)
13.
Journal Article
Bar-Even, A.; Tawfik, D. S.: Engineering specialized metabolic pathways-is there a room for enzyme improvements? Current Opinion in Biotechnology 24 (2), pp. 310 - 319 (2013)
14.
Journal Article
Barlow, P. W.; Fisahn, J.: Swarms, swarming and entanglements of fungal hyphae and of plant roots. Communicative & Integrative Biology 6 (5), e25299 (2013)
15.
Journal Article
Barlow, P. W.; Fisahn, J.; Yazdanbakhsh, N.; Moraes, T. A.; Khabarova, O. V.; Gallep, C. M.: Arabidopsis thaliana root elongation growth is sensitive to lunisolar tidal acceleration and may also be weakly correlated with geomagnetic variations. Annals of Botany 111 (5), pp. 859 - 872 (2013)
16.
Journal Article
Benina, M.; Obata, T.; Mehterov, N.; Ivanov, I.; Petrov, V.; Toneva, V.; Fernie, A. R.; Gechev, T. S.: Comparative metabolic profiling of Haberlea rhodopensis, Thellungiella halophyla, and Arabidopsis thaliana exposed to low temperature. Frontiers in Plant Science 4, 499 (2013)
17.
Journal Article
Blaby, I. K.; Glaesener, A. G.; Mettler, T.; Fitz-Gibbon, S. T.; Gallaher, S. D.; Liu, B.; Boyle, N. R.; Kropat, J.; Stitt, M.; Johnson, S. et al.; Benning, C.; Pellegrini, M.; Casero, D.; Merchant, S. S.: Systems-Level Analysis of Nitrogen Starvation-Induced Modifications of Carbon Metabolism in a Chlamydomonas reinhardtii Starchless Mutant. The Plant Cell 5 (11), pp. 4305- - 4323 (2013)
18.
Journal Article
Bock, R.: Strategies for metabolic pathway engineering with multiple transgenes. Plant Molecular Biology 83 (1-2), pp. 21 - 31 (2013)
19.
Journal Article
Bocobza, S. E.; Malitsky, S.; Araujo, W. L.; Nunes-Nesi, A.; Meir, S.; Shapira, M.; Fernie, A. R.; Aharoni, A.: Orchestration of Thiamin Biosynthesis and Central Metabolism by Combined Action of the Thiamin Pyrophosphate Riboswitch and the Circadian Clock in Arabidopsis. The Plant Cell 25 (1), pp. 288 - 307 (2013)
20.
Journal Article
Bromke, M. A.; Giavalisco, P.; Willmitzer, L.; Hesse, H.: Metabolic Analysis of Adaptation to Short-Term Changes in Culture Conditions of the Marine Diatom Thalassiosira pseudonana. PLoS One 8 (6), p. e67340 (2013)
21.
Journal Article
Bromke, M. A.; Hoefgen, R.; Hesse, H.: Phylogenetic aspects of the sulfate assimilation genes from Thalassiosira pseudonana. Amino Acids 44 (5), pp. 1253 - 1265 (2013)
22.
Journal Article
Brotman, Y.; Landau, U.; Cuadros-Inostroza, A.; Tohge, T.; Fernie, A. R.; Chet, I.; Viterbo, A.; Willmitzer, L.: Trichoderma-Plant Root Colonization: Escaping Early Plant Defense Responses and Activation of the Antioxidant Machinery for Saline Stress Tolerance. PLoS Pathogens 9 (3), e1003221 (2013)
23.
Journal Article
Caldana, C.; Li, Y.; Leisse, A.; Zhang, Y.; Bartholomaeus, L.; Fernie, A. R.; Willmitzer, L.; Giavalisco, P.: Systemic Analysis of Inducible Target of Rapamycin Mutants Reveal a General Metabolic Switch Controlling Growth in Arabidopsis thaliana. The Plant Journal 73 (6), pp. 897 - 909 (2013)
24.
Journal Article
Carillo, P.; Feil, R.; Gibon, Y.; Satoh-Nagasawa, N.; Jackson, D.; Bläsing, O. E.; Stitt, M.; Lunn, J. E.: A fluorometric assay for trehalose in the picomole range. Plant Methods 9, p. 21 - 21 (2013)
25.
Journal Article
Caroca, R.; Howell, K. A.; Hasse, C.; Ruf, S.; Bock, R.: Design of chimeric expression elements that confer high-level gene activity in chromoplasts. Plant Journal 73 (3), pp. 368 - 379 (2013)
26.
Journal Article
Cascales-Minana, B.; Munoz-Bertomeu, J.; Flores-Tornero, M.; Anoman, A. D.; Pertusa, J.; Alaiz, M.; Osorio, S.; Fernie, A. R.; Segura, J.; Ros, R.: The Phosphorylated Pathway of Serine Biosynthesis Is Essential Both for Male Gametophyte and Embryo Development and for Root Growth in Arabidopsis. The Plant Cell 25 (6), pp. 2084 - 2101 (2013)
27.
Journal Article
Chen, L.; Lee, J. H.; Weber, H.; Tohge, T.; Witt, S.; Roje, S.; Fernie, A. R.; Hellmann, H.: Arabidopsis BPM Proteins Function as Substrate Adaptors to a CULLIN3-Based E3 Ligase to Affect Fatty Acid Metabolism in Plants. The Plant Cell 25 (6), pp. 2253 - 2264 (2013)
28.
Journal Article
Crumpton-Taylor, M.; Pike, M.; Lu, K. J.; Hylton, C. M.; Feil, R.; Eicke, S.; Lunn, J. E.; Zeeman, S. C.; Smith, A. M.: Starch synthase 4 is essential for coordination of starch granule formation with chloroplast division during Arabidopsis leaf expansion. New Phytologist 200 (4), pp. 1064 - 1075 (2013)
29.
Journal Article
Dai, Z. W.; Leon, C.; Feil, R.; Lunn, J. E.; Delrot, S.; Gomes, E.: Metabolic profiling reveals coordinated switches in primary carbohydrate metabolism in grape berry (Vitis vinifera L.), a non-climacteric fleshy fruit. Journal of Experimental Botany 64 (5), pp. 1345 - 1355 (2013)
30.
Journal Article
Dall'Osto, L.; Piques, M.; Ronzani, M.; Molesini, B.; Alboresi, A.; Cazzaniga, S.; Bassi, R.: The Arabidopsis nox Mutant Lacking Carotene Hydroxylase Activity Reveals a Critical Role for Xanthophylls in Photosystem I Biogenesis. PLANT CELL 25 (2), pp. 591 - 608 (2013)
31.
Journal Article
de Godoy, F.; Bermudez, L.; Lira, B. S.; de Souza, A. P.; Elbl, P.; Demarco, D.; Alseekh, S.; Insani, M.; Buckeridge, M.; Almeida, J. et al.; Grigioni, G.; Fernie, A. R.; Carrari, F.; Rossi, M.: Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato. Journal of Experimental Botany 64 (8), pp. 2449 - 2466 (2013)
32.
Journal Article
de Souza, W. R.; Morais, E. R.; Krohn, N. G.; Savoldi, M.; Goldman, M. H. S.; Rodrigues, F.; Caldana, C.; Semelka, C. T.; Tikunov, A. P.; Macdonald, J. M. et al.; Goldman, G. H.: Identification of Metabolic Pathways Influenced by the G-Protein Coupled in Aspergillus nidulans. PLoS One 8 (5), e62088 (2013)
33.
Journal Article
Degenkolbe, T.; Do, P. T.; Kopka, J.; Zuther, E.; Hincha, D. K.; Koehl, K. I.: Identification of Drought Tolerance Markers in a Diverse Population of Rice Cultivars by Expression and Metabolite Profiling. PLoS One 8 (5), e63637 (2013)
34.
Journal Article
Demir, F.; Horntrich, C.; Blachutzik, J. O.; Scherzer, S.; Reinders, Y.; Kierszniowska, S.; Schulze, W. X.; Harms, G. S.; Hedrich, R.; Geiger, D. et al.; Kreuzer, I.: Arabidopsis nanodomain-delimited ABA signaling pathway regulates the anion channel SLAH3. Proceedings of the National Academy of Sciences of the United States of America 110 (20), pp. 8296 - 8301 (2013)
35.
Journal Article
Detmann, K.; Araujo, W.; Martins, S.; Fernie, A. R.; Damatta, F.: Metabolic alterations triggered by silicon nutrition: Is there a signaling role for silicon? Plant Signaling & Behavior 8 (1), p. e22523 (2013)
36.
Journal Article
Devers, E. A.; Teply, J.; Reinert, A.; Gaude, N.; Krajinski, F.: An endogenous artificial microRNA system for unraveling the function of root endosymbioses related genes in Medicago truncatula. BMC Plant Biology 13 (1), p. 82 (2013)
37.
Journal Article
Di Matteo, A.; Ruggieri, V.; Sacco, A.; Rigano, M.; Carriero, F.; Bolger, A.; Fernie, A. R.; Frusciante, L.; Barone, A.: Identification of candidate genes for phenolic accumulation in tomato fruit. Plant Science 205-206, pp. 87 - 96 (2013)
38.
Journal Article
Doerr, J. R.; Yu, Y.; Milanovic, M.; Beuster, G.; Zasada, C.; Daebritz, J. H. M.; Lisec, J.; Lenze, D.; Gerhardt, A.; Schleicher, K. et al.; Kratzat, S.; Purfuerst, B.; Walenta, S.; Mueller-Klieser, W.; Graeler, M.; Hummel, M.; Keller, U.; Buck, A. K.; Doerken, B.; Willmitzer, L.; Reimann, M.; Kempa, S.; Lee, S.; Schmitt, C. A.: Synthetic lethal metabolic targeting of cellular senescence in cancer therapy. Nature 501 (7467), pp. 421 - 425 (2013)
39.
Journal Article
Dominguez, P. G.; Frankel, N.; Mazuch, J.; Balbo, I.; Iusem, N. D.; Fernie, A. R.; Carrari, F.: Asr1 Mediates Glucose-Hormone Crosstalk by Affecting Sugar Trafficking in Tobacco Plants. Plant Physiology 161 (3), pp. 1486 - 1500 (2013)
40.
Journal Article
Do, P. T.; Degenkolbe, T.; Erban, A.; Heyer, A. G.; Kopka, J.; Koehl, K. I.; Hincha, D. K.; Zuther, E.: Dissecting Rice Polyamine Metabolism under Controlled Long-Term Drought Stress. PLoS One 8 (4), e60325 (2013)
41.
Journal Article
Duan, G. Y.; Christian, N.; Schwachtje, J.; Walther, D.; Ebenhoeh, O.: The Metabolic Interplay between Plants and Phytopathogens. Metabolites 3 (1), pp. 1 - 23 (2013)
42.
Journal Article
Duan, G. Y.; Walther, D.; Schulze, W. X.: Reconstruction and analysis of nutrient-induced phosphorylation networks in Arabidopsis thaliana. Frontiers in Plant Science 4, 540 (2013)
43.
Journal Article
Duarte, G. T.; Matiolli, C. C.; Pant, B. D.; Schlereth, A.; Scheible, W.-R.; Stitt, M.; Vicentini, R.; Vincentz, M.: Involvement of microRNA-related regulatory pathways in the glucose-mediated control of Arabidopsis early seedling development. Journal of experimental botany 64 (14), pp. 4301 - 4312 (2013)
44.
Journal Article
Dubiella, U.; Seybold, H.; Durian, G.; Komander, E.; Lassig, R.; Witte, C.-P.; Schulze, W. X.; Romeis, T.: Calcium-dependent protein kinase/NADPH oxidase activation circuit is required for rapid defense signal propagation. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 110 (21), pp. 8744 - 8749 (2013)
45.
Journal Article
Dubois, M.; Skirycz, A.; Claeys, H.; Maleux, K.; Dhondt, S.; De Bodt, S.; Vanden Bossche, R.; De Milde, L.; Yoshizumi, T.; Matsui, M. et al.; Inze, D.: ETHYLENE RESPONSE FACTOR6 Acts as a Central Regulator of Leaf Growth under Water-Limiting Conditions in Arabidopsis. Plant Physiology 162 (1), pp. 319 - 332 (2013)
46.
Journal Article
Fernie, A. R.; Bauwe, H.; Eisenhut, M.; Florian, A.; Hanson, D. T.; Hagemann, M.; Keech, O.; Mielewczik, M.; Nikoloski, Z.; Peterhansel, C. et al.; Roje, S.; Sage, R.; Timm, S.; von Cammerer, S.; Weber, A. P.; Westhoff, P.: Perspectives on plant photorespiratory metabolism. Plant Biology 15 (4), pp. 748 - 753 (2013)
47.
Journal Article
Fernie, A. R.; Morgan, J. A.: Analysis of metabolic flux using dynamic labeling and metabolic modeling. Plant, Cell and Environment 36 (9), pp. 1738 - 1750 (2013)
48.
Journal Article
Fernie, A. R.; Tohge, T.: Plastic, fantastic! Phenotypic variance in the transcriptional landscape of the grape berry. Genome Biology 14 (6), 119 (2013)
49.
Journal Article
Fernie, A. R.; Usadel, B.: The plant transcriptome – from integrating observations to models. Frontiers in Plant Science 4, p. 48 (2013)
50.
Journal Article
Finkemeier, I.; König, A.-C.; Heard, W.; Nunes-Nesi, A.; Pham, P. A.; Leister, D.; Fernie, A. R.; Sweetlove, L. J.: Transcriptomic Analysis of the Role of Carboxylic Acids in Metabolite Signaling in Arabidopsis Leaves. Plant Physiology 162 (1), pp. 239 - 253 (2013)
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