All Publications

1.

Journal Article

Agrawal, S.; Karcher, D.; Ruf, S.; Bock, R.: The Functions of Chloroplast Glutamyl-tRNA in Translation and Tetrapyrrole Biosynthesis. Plant Physiology 183 (1), pp. 263 - 276 (2020)

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Alseekh, S.; Ofner, I.; Liu, Z.; Osorio, S.; Vallarino, J. G.; Last, R. L.; Zamir, D.; Tohge, T.; Fernie, A. R.: Quantitative trait loci analysis (QTL) of seed specialized metabolites reveals seed-specific flavonols and differential regulation of glycoalkaloid content in tomato. The Plant Journal 103 (6), pp. 2007 - 2024 (2020)

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3.

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Alseekh, S.; de Souza, L. P.; Benina, M.; Fernie, A. R.: The Style and Substance of Plant Flavonoid decoration; Towards Defining both Structure and Function. Phytochemistry 174, 112347 (2020)

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Armbruster, U.; Strand, D.: Regulation of chloroplast primary metabolism. Photosynthesis Research 145 (1), pp. 1 - 3 (2020)

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Artiukhov V, A.; Grabarska, A.; Gumbarewicz, E.; Aleshin, V. A.; Kaehne, T.; Obata, T.; Kazantsev V, A.; Lukashev V, N.; Stepulak, A.; Fernie, A. R. et al.; Bunik I, V.: Synthetic analogues of 2-oxo acids discriminate metabolic contribution of the 2-oxoglutarate and 2-oxoadipate dehydrogenases in mammalian cells and tissues. Scientific Reports 10 (1), 1886 (2020)

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Aslan, S.; Noor, E.; Benito-Vaquerizo, S.; Lindner, S. N.; Bar-Even, A.: Design and engineering of E. coli metabolic sensor strains with a wide sensitivity range for glycerate. Metabolic Engineering 57, pp. 96 - 109 (2020)

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7.

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Aucique-Pérez, C.E.; Resende, R.S.; Martins, A.O.; Silveira, P.R.; Cavalcanti, J.H.F.; Vieira, N.M.; Fernie, A. R.; Araújo, W.L.; DaMatta, F.M.; Rodrigues, F.Á.: How do wheat plants cope with Pyricularia oryzae infection? A physiological and metabolic approach. Planta 252 (2), 24 (2020)

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8.

Journal Article

Baena-González, E.; Lunn, J. E.: SnRK1 and trehalose 6-phosphate – two ancient pathways converge to regulate plant metabolism and growth. Current Opinion in Plant Biology 55, pp. 52 - 59 (2020)

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9.

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Bianchetti, R.; De Luca, B.; de Haro, L.A.; Rosado, D.; Demarco, D.; Conte, M.; Bermudez, L.; Freschi, L.; Fernie, A. R.; Michaelson, L.V. et al.; Haslam, R.P.; Rossi, M.; Carrari, F.: Phytochrome-Dependent Temperature Perception Modulates Isoprenoid Metabolism. Plant Physiology 183 (3), pp. 869 - 882 (2020)

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10.

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Borghi, M.; Fernie, A. R.: Outstanding questions in flower metabolism. The Plant Journal 103 (4), pp. 1275 - 1288 (2020)

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11.

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Brito, D. S.; Agrimi, G.; Charton, L.; Brilhaus, D.; Bitetto, M. G.; Lana-Costa, J.; Messina, E.; Nascimento, C. P.; Araújo, E. F.; Viana Pires, M. et al.; Pérez-Díaz, J. L.; Obata, T.; Porcelli, V.; Palmieri, L.; Araújo, W. L.; Weber, A. P. M.; Linka, N.; Fernie, A. R.; Palmieri, F.; Nunes-Nesi, A.: Biochemical and Functional Characterization of a Mitochondrial Citrate Carrier in Arabidopsis thaliana. Biochemical Journal 477 (9), pp. 1759 - 1777 (2020)

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12.

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Cerda, A.; Moreno, J.C.; Acosta, D.; Godoy, F.; Cáceres, J. C.; Cabrera, R.; Stange, C.: Functional characterization and in silico modelling of MdPSY2 variants and MdPSY5 phytoene synthases from Malus domestica. Journal of Plant Physiology 249, 153166 (2020)

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Journal Article

Cesarino, I.; Ioio, R. D.; Kirschner, G. K.; Ogden, M.; Picard, K. L.; Rast-Somssich, M. I.; Somssich, M.: Plant Science’s Next Top Models. Annals of Botany 126 (1), pp. 1 - 23 (2020)

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14.

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Chen, J.; Hu, X.; Shi, T.; Yin, H.; Sun, D.; Hao, Y.; Xia, X.; Luo, J.; Fernie, A. R.; He, Z. et al.; Chen, W.: Metabolite-based genome-wide association study enables dissection of the flavonoid decoration pathway of wheat kernels. Plant Biotechnology Journal 18 (8), pp. 1722 - 1735 (2020)

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15.

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Chen, M.-X.; Zhu, F.-Y.; Gao, B.; Ma, K.-L.; Zhang, Y.; Fernie, A. R.; Chen, X.; Dai, L.; Ye, N.-H.; Zhang, X. et al.; Tian, Y.; Zhang, D.; Xiao, S.; Zhang, J.; Liu, Y.-G.: Full-length transcript-based proteogenomics of rice improves its genome and proteome annotation. Plant Physiology 182 (3), pp. 1510 - 1526 (2020)

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16.

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Chorianopoulou, S. N.; Sigalas, P. P.; Tsoutsoura, N.; Apodiakou, A.; Saridis, G.; Ventouris, Y. E.; Bouranis, D. L.: Regulation of Sulfur Homeostasis in Mycorrhizal Maize Plants Grown in a Fe-Limited Environment. International Journal of Molecular Sciences 21 (9), 3249 (2020)

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Journal Article

Claassens, N. J.; Bordanaba-Florit, G.; Cotton, C. A. R.; de Maria, A.; Finger-Bou, M.; Friedeheim, L.; Giner-Laguarda, N.; Munar-Palmer, M.; Newell, W.; Scarinci, G. et al.; Verbunt, J.; de Vries, S.T.; Yilmaz, S.; Bar-Even, A.: Replacing the Calvin cycle with the reductive glycine pathway in Cupriavidus necator. Metabolic Engineering 62, pp. 30 - 41 (2020)

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18.

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Claassens, N. J.; Scarinci, G.; Fischer, A.; Flamholz, A.I.; Newell, W.; Frielingsdorf, S.; Lenz, O.; Bar-Even, A.: Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle. Proceedings of the National Academy of Sciences of the United States of America 117 (36), pp. 22452 - 22461 (2020)

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19.

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Clemente-Moreno, M.; Omranian, N.; Sáez, P.; Figueroa, C.; Del-Saz, N.; Elso, M.; Poblete, L.; Orf, I.; Cuadros-Inostroza, A.; Cavieres, L.A. et al.; Bravo, L.; Fernie, A. R.; Ribas-Carbó, M.; Flexas, J.; Nikoloski, Z.; Brotman, Y.; Gago, J.: Low temperature tolerance of the Antarctic species Deschampsia antarctica: a complex metabolic response associated with nutrient remobilization. Plant, Cell and Environment 43 (6), pp. 1376 - 1393 (2020)

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20.

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Correa Galvis, V.; Strand, D.; Messer, M.; Thiele, W.; Bethmann, S.; Hübner, D.; Uflewski, M.; Kaiser, E.; Siemiatkowska, B.; Morris, B. A. et al.; Toth, S. Z.; Watanabe, M.; Brückner, F.; Hoefgen, R.; Jahns, P.; Schöttler, M. A.; Armbruster, U.: H+ transport by K+ EXCHANGE ANTIPORTER3 promotes photosynthesis and growth in chloroplast ATP synthase mutants. Plant Physiology 182, pp. 2126 - 2142 (2020)

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21.

Journal Article

Correa, S. M.; Fernie, A. R.; Nikoloski, Z.; Brotman, Y.: Towards model-driven characterization and manipulation of plant lipid metabolism. Progress in Lipid Research 80, 101051 (2020)

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22.

Journal Article

Cotton, C. A. R.; Bernhardsgrütter, I.; He, H.; Burgener, S.; Schulz, L.; Paczia, N.; Dronsella, B.; Erban, A.; Toman, S.; Dempfle, M. et al.; de Maria, A.; Kopka, J.; Lindner, S. N.; Erb, T. J.; Bar-Even, A.: Underground isoleucine biosynthesis pathways in E. coli. eLife 9, e54207 (2020)

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23.

Journal Article

Cotton, C. A. R.; Claassens, N. J.; Benito-Vaquerizo, S.; Bar-Even, A.: Renewable methanol and formate as microbial feedstocks. Current Opinion in Biotechnology 62, pp. 168 - 180 (2020)

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24.

Journal Article

Cuadros-Inostroza, Á.; Verdugo-Alegría, C.; Willmitzer, L.; Moreno-Simunovic, Y.; Vallarino, J. G.: Non-Targeted Metabolite Profiles and Sensory Properties Elucidate Commonalities and Differences of Wines Made with the Same Variety but Different Cultivar Clones. Metabolites 10 (6), E220 (2020)

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25.

Journal Article

da Fonseca-Pereira, P.; Souza, P. V.L.; Hou, L.-Y.; Schwab, S.; Geigenberger, P.; Nunes-Nesi, A.; Timm, S.; Fernie, A. R.; Thormählen, I.; Araújo, W. L. et al.; Daloso, D. M.: Thioredoxin h2 contributes to the redox regulation of mitochondrial photorespiratory metabolism. Plant, Cell and Environment 43 (1), pp. 188 - 208 (2020)

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26.

Journal Article

de Souza, L. P.; Alseekh, S.; Brotman, Y.; Fernie, A. R.: Network based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation. Expert Review of Proteomics 17 (4), pp. 243 - 255 (2020)

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27.

Journal Article

de Souza, L. P.; Garbowicz, K.; Brotman, Y.; Tohge, T.; Fernie, A. R.: The acetate pathway supports flavonoid and lipid biosynthesis in Arabidopsis. Plant Physiology 182 (2), pp. 857 - 869 (2020)

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28.

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Devkar, V.; Thirumalaikumar, V. P.; Xue, G.-P.; Vallarino, J. G.; Turečková, V.; Strnad, M.; Fernie, A. R.; Hoefgen, R.; Mueller-Roeber, B.; Balazadeh, S.: Multifaceted regulatory function of tomato SlTAF1 in the response to salinity stress. New Phytologist 225 (4), pp. 1681 - 1698 (2020)

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29.

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Diretto, G.; Frusciante, S.; Fabbri, C.; Schauer, N.; Busta, L.; Wang, Z.; Matas, A. J.; Fiore, A.; Rose, J. K.C.; Fernie, A. R. et al.; Jetter, R.; Mattei, B.; Giovannoni, J.; Giuliano, G.: Manipulation of β-carotene levels in tomato fruits results in increased ABA content and extended shelf-life. Plant Biotechnology Journal 18 (5), pp. 1185 - 1199 (2020)

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30.

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Durian, G.; Sedaghatmehr, M.; Matallana-Ramirez, L.P.; Schilling, S. M.; Schaepe, S.; Guerra, T.; Herde, M.; Witte, C.-P.; Mueller-Roeber, B.; Schulze, W. X. et al.; Balazadeh, S.; Romeis, T.: Calcium-Dependent Protein Kinase CPK1 Controls Cell Death by In Vivo Phosphorylation of Senescence Master Regulator ORE1. The Plant Cell 32 (5), pp. 1610 - 1625 (2020)

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31.

Journal Article

Eng, R.C.; Sampathkumar, A.: Plant Biology: Bending of Plant Organs. Current Biology 30 (9), pp. R402 - R405 (2020)

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32.

Journal Article

Estévez-Geffriaud, V.; Vicente, R.; Vergara-Díaz, O.; Narváez Reinaldo, J.J.; Trillas, M.I.: Application of Trichoderma asperellum T34 on maize (Zea mays) seeds protects against drought stress. Planta 252 (1), 8 (2020)

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33.

Journal Article

Feitosa-Araujo, E.; Chaves, I. d. S.; Florian, A.; da Fonseca-Pereira, P.; Apfata, J. A. C.; Heyneke, E.; Medeiros, D.B.; Pires, M. V.; Mettler-Altmann, T.; Neuhaus, H. E. et al.; Palmieri, F.; Araújo, W. L.; Obata, T.; Weber, A. P. M.; Linka, N.; Fernie, A. R.; Nunes-Nesi, A.: Down-regulation of a Mitochondrial NAD+ Transporter (NDT2) Alters Seed Production and Germination in Arabidopsis. Plant and Cell Physiology 61 (5), pp. 897 - 908 (2020)

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34.

Journal Article

Fernández-Marín, B.; Gulías, J.; Figueroa, C. M.; Iñiguez, C.; Clemente-Moreno, M. J.; Nunes-Nesi, A.; Fernie, A. R.; Cavieres, L. A.; Bravo, L. A.; García-Plazaola, J. I. et al.; Gago, J.: How do vascular plants perform photosynthesis in extreme environments? An integrative ecophysiological and biochemical story. The Plant Journal 101 (4), pp. 979 - 1000 (2020)

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35.

Journal Article

Fernandez-Marin, B.; Nadal, M.; Gago, J.; Fernie, A. R.; Lopez-Pozo, M.; Artetxe, U.; Garcia-Plazaola, J. I.; Verhoeven, A.: Born to revive: molecular and physiological mechanisms of double tolerance in a paleotropical and resurrection plant. New Phytologist 226 (3), pp. 741 - 759 (2020)

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Journal Article

Fernie, A. R.: Degrading to inhibit: a role for Phytochrome Initiation Factors in determining hypocotyl growth under UV-B. The Plant Journal 101 (3), pp. 505 - 506 (2020)

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37.

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Fernie, A. R.; Bachem, C.W.B.; Helariutta, Y.; Neuhaus, H.E.; Prat, S.; Ruan, Y.-L.; Stitt, M.; Sweetlove, L.J.; Tegeder, M.; Wahl, V. et al.; Sonnewald, S.; Sonnewald, U.: Synchronization of developmental, molecular and metabolic aspects of source–sink interactions. Nature Plants 6, pp. 55 - 66 (2020)

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38.

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Fernie, A. R.; Bauwe, H.: Wasteful, essential, evolutionary stepping stone? The multiple personalities of the photorespiratory pathway. The Plant Journal (accepted)

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39.

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Fernie, A. R.; Yan, J.: Targeting Key Genes to Tailor Old and New Crops for a Greener Agriculture. Molecular Plant 13 (3), pp. 354 - 356 (2020)

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Journal Article

Fernie, A. R.; Zhang, Y.; Sampathkumar, A.: Cytoskeleton Architecture Regulates Glycolysis Coupling Cellular Metabolism to Mechanical Cues. Trends in biochemical sciences 45 (8), pp. 637 - 638 (2020)

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41.

Journal Article

Ferrari, C.; Mutwil, M.: Gene expression analysis of Cyanophora paradoxa reveals conserved abiotic stress responses between basal algae and flowering plants. New Phytologist 225 (4), pp. 1562 - 1577 (2020)

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42.

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Ferrari, C.; Shivhare, D.; Hansen, B. O.; Pasha, A.; Esteban, E.; Provart, N. J.; Kragler, F.; Fernie, A. R.; Tohge, T.; Mutwil, M.: Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots. The Plant Cell 32, pp. 853 - 870 (2020)

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43.

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Fichtner, F.; Olas, J. J.; Feil, R.; Watanabe, M.; Krause, U.; Hoefgen, R.; Stitt, M.; Lunn, J. E.: Functional features of TREHALOSE-6-PHOSPHATE SYNTHASE1 - an essential enzyme in Arabidopsis thaliana. The Plant Cell 32 (6), pp. 1949 - 1972 (2020)

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44.

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Firmino, A.; Gorka, M.; Graf, A.; Skirycz, A.; Martinez-Seidel, F.; Zander, K.; Kopka, J.; Beine-Golovchuk, O.: Separation and paired proteome profiling of plant chloroplast and cytoplasmic ribosomes. Plants 9 (7), 892 (2020)

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45.

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Florez-Sarasa, I.; Fernie, A. R.; Gupta, K.J.: Does the alternative respiratory pathway offer protection against the adverse effects resulting from climate change? Journal of Experimental Botany 71 (2), pp. 465 - 469 (2020)

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46.

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Florez-Sarasa, I.; Jose Clemente-Moreno, M.; Cifre, J.; Capo, M.; Llompart, M.; Fernie, A. R.; Bota, J.: Differences in Metabolic and Physiological Responses between Local and Widespread Grapevine Cultivars under Water Deficit Stress. Agronomy 10 (7), 1052 (2020)

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Fraser, P. D.; Aharoni, A.; Hall, R. D.; Huang, S.; Giovannoni, J. J.; Sonnewald, U.; Fernie, A. R.: Metabolomics should be deployed in identification and characterization of gene-edited crops. The Plant Journal (accepted)

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48.

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Gago, J.; Estrany, J.; Estes, L.; Fernie, A. R.; Alorda, B.; Brotman, Y.; Flexas, J.; Escalona, J. M.; Medrano, H.: Nano and Micro Unmanned Aerial Vehicles (UAVs): A New Grand Challenge for Precision Agriculture? Current Protocols in Plant Biology 5 (1), e20103 (2020)

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49.

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Gechev, T.; Georgiev, M. I.; Fernie, A. R.: PlantaSyst: Teaming up for Systems Biology and Biotechnology. Trends in Plant Science 25 (7), pp. 621 - 624 (2020)

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Gottmann, P.; Ouni, M.; Zellner, L.; Jähnert, M.; Rittig, K.; Walther, D.; Schürmann, A.: Polymorphisms in miRNA binding sites involved in metabolic diseases in mice and humans. Scientific Reports 10 (1), 7202 (2020)

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