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Journal Article (4072)

1.
Journal Article
Apriyanto, A.; Compart, J.; Zimmermann, V.; Alseekh, S.; Fernie, A. R.; Fettke, J.: Indication that starch and sucrose are biomarkers for oil yield in oil palm (Elaeis guineensis Jacq.). FOOD CHEMISTRY 393, 133361 (2022)
2.
Journal Article
Mehring, A.; Zayed, A.; Salem, M.A.; Alseekh, S.; Fernie, A.; Ulber, R.: Time-dependent behaviour of methyl jasmonate elicited cell suspension cultures of Ocimum species via untargeted mass spectrometry-based metabolomics. Industrial Crops and Products 187 (Part A), 115414 (2022)
3.
Journal Article
Yin, Z.; Dong, T.; Huang, W.; Du, M.; Chen, D.; Fernie, A. R.; Yi, G.; Yan, S.: Spatially resolved metabolomics reveals variety-specific metabolic changes in banana pulp during postharvest senescence. FOOD CHEMISTRY: X 15, 100371 (2022)
4.
Journal Article
Brigante, F. I.; Lucini Mas, A.; Erban, A.; Fehrle, I.; Martinez-Seidel, F.; Kopka, J.; Wunderlin, D. A.; Baroni, M. V.: Authenticity assessment of commercial bakery products with chia, flax and sesame seeds: Application of targeted and untargeted metabolomics results from seeds and lab-scale cookies. Food control 140, 109114 (2022)
5.
Journal Article
Sato, H.; Köhler, C.: Genomic imprinting regulates establishment and release of seed dormancy. Current Opinion in Plant Biology 69, 102264 (2022)
6.
Journal Article
Tiozon, R.J.N.; Sartagoda, K. J. D.; Serrano, L. M. N.; Fernie, A. R.; Sreenivasulu, N.: Metabolomics based inferences to unravel phenolic compound diversity in cereals and its implications for human gut health. Trends in Food Science & Technology 127, pp. 14 - 25 (2022)
7.
Journal Article
Wang, Y.; Li, W.; Wang, L.; Yan, J.; Lu, G.; Yang, N.; Xu, J.; Wang, Y.; Gui, S.; Chen, G. et al.; Li, S.; Wu, C.; Guo, T.; Xiao, Y.; Warburton, M. L.; Fernie, A. R.; Dresselhaus, T.; Yan, J.: Three types of genes underlying the Gametophyte factor1 locus cause unilateral cross incompatibility in maize. Nature Communications 13 (1), 4498 (2022)
8.
Journal Article
Feitosa-Araujo, E.; da Fonseca-Pereira, P.; Pena, M.; Lana-Costa, J.; Coelho, D.; Silva, F.; Medeiros, D.B.; Linka, N.; Araujo, W.; Weber, A. et al.; Fernie, A. R.; Nunes-Nesi, A.: Mitochondrial and peroxisomal NAD(+) uptake are important for improved photosynthesis and seed yield under elevated CO2 concentrations. The Plant Journal 111 (3), pp. 713 - 730 (2022)
9.
Journal Article
Ishihara, H.; Alseekh, S.; Feil, R.; Perera, P.; George, G. M.; Niedzwiecki, P.; Arrivault, S.; Zeeman, S. C.; Fernie, A. R.; Lunn, J. E. et al.; Smith, A. M.; Stitt, M.: Rising rates of starch degradation during daytime and trehalose 6-phosphate optimize carbon availability. Plant Physiology 189 (4), pp. 1976 - 2000 (2022)
10.
Journal Article
Moraes, T. A.; Mengin, V.; Peixoto, B.; Encke, B.; Krohn, N.; Höhne, M.; Krause, U.; Stitt, M.: The circadian clock mutant lhy cca1 elf3 paces starch mobilization to dawn despite severely disrupted circadian clock function. Plant Physiology 189, pp. 2332 - 2356 (2022)
11.
Journal Article
Hashemi, S.; Razaghi-Moghadam, Z.; Laitinen, R.A.E.; Nikoloski, Z.: Relative flux trade-offs and optimization of metabolic network functionalities. Computational and Structural Biotechnology Journal 20, pp. 3963 - 3971 (2022)
12.
Journal Article
Chew, Y. H.; Seaton, D. D.; Mengin, V.; Flis, A.; Mugford, S. T.; George, G. M.; Moulin, M.; Hume, A.; Zeeman, S. C.; Fitzpatrick, T. B. et al.; Smith, A. M.; Stitt, M.; Millar, A. J.: The Arabidopsis Framework Model version 2 predicts the organism-level effects of circadian clock gene mis-regulation. in silico Plants 4 (2), diac010 (2022)
13.
Journal Article
Golczyk, H.; Hřibová, E.; Doležel, J.; Cuadrado, Á.; Garbsch, F.; Greiner, S.; Janeczko, M.; Szklarczyk, M.; Masłyk, M.; Kubiński, K.: Migration of repetitive DNAs during evolution of the permanent translocation heterozygosity in the oyster plant (Tradescantia section Rhoeo). Chromosoma: Biology of the Nucleus (2022)
14.
Journal Article
Mulugeta Aneley, G.; Haas, M.; Koehl, K. I.: LIDAR-Based Phenotyping for Drought Response and Drought Tolerance in Potato. Potato Research (2022)
15.
Journal Article
Rivas, F.J.M.; Blanco-Portales, R.; Molina-Hidalgo, F.; Caballero, J.; de Souza, L. P.; Alseekh, S.; Fernie, A. R.; Munoz-Blanco, J.; Rodriguez-Franco, A.: Azacytidine arrests ripening in cultivated strawberry (Fragaria x ananassa) by repressing key genes and altering hormone contents. BMC Plant Biology 22 (1), 278 (2022)
16.
Journal Article
Wei, S.; Li, X.; Lu, Z.; Zhang, H.; Ye, X.; Zhou, Y.; Li, J.; Yan, Y.; Pei, H.; Duan, F. et al.; Wang, D.; Chen, S.; Wang, P.; Zhang, C.; Shang, L.; Zhou, Y.; Yan, P.; Zhao, M.; Huang, J.; Bock, R.; Qian, Q.; Zhou, W.: A transcriptional regulator that boosts grain yields and shortens the growth duration of rice. Science 377, 6604 (2022)
17.
Journal Article
Lopez, L. S.; Völkner, C.; Day, P. M.; Lewis, C. M.; Lewis, C. L.; Schneider, D.; Correa Galvis, V.; Cruz, J. A.; Armbruster, U.; Kramer, D. M. et al.; Kunz, H.-H.: The Arabidopsis T-DNA mutant SALK_008491 carries a 14-kb deletion on chromosome 3 that provides rare insights into the plant response to dynamic light stress. Plant Direct 6 (7), e429 (2022)
18.
Journal Article
Tan, J.; Forner, J.; Karcher, D.; Bock, R.: DNA base editing in nuclear and organellar genomes. Trends in Genetics (2022)
19.
Journal Article
Pereira, A. M.; Martins, A. O.; Batista-Silva, W.; Condori-Apfata, J. A.; Nascimento, V. L.; Silva, V. F.; Oliveira, L. A.; Medeiros, D.B.; Martins, S. C. V.; Fernie, A. R. et al.; Nunes-Nesi, A.; Araújo, W. L.: Elevated carbon assimilation and metabolic reprogramming in tomato high pigment mutants support the increased production of pigments. Plant Cell Reports (2022)
20.
Journal Article
Sandoval-Ibanez, O.; Rolo, D.; Ghandour, R.; Hertle, A. P.; Armarego-Marriott, T.; Sampathkumar, A.; Zoschke, R.; Bock, R.: De-etiolation-induced protein 1 (DEIP1) mediates assembly of the cytochrome b6f complex in Arabidopsis. Nature Communications 13 (1), 4045 (2022)
21.
Journal Article
Barros, J. A. S.; Cavalcanti, J. H. F.; Pimentel, K. G.; Medeiros, D.B.; Silva, J. C. F.; Condori-Apfata, J. A.; Lapidot-Cohen, T.; Brotman, Y.; Nunes-Nesi, A.; Fernie, A. R. et al.; Avin-Wittenberg, T.; Araújo, W. L.: The Significance of WRKY45 Transcription Factor in Metabolic Adjustments During Dark-induced Leaf Senescence. Plant, Cell and Environment (2022)
22.
Journal Article
Blankenagel, S.; Eggels, S.; Frey, M.; Grill, E.; Bauer, E.; Dawid, C.; Fernie, A. R.; Haberer, G.; Hammerl, R.; Medeiros, D.B. et al.; Ouzunova, M.; Presterl, T.; Ruß, V.; Schäufele, R.; Schlüter, U.; Tardieu, F.; Urbany, C.; Urzinger, S.; Weber, A. P. M.; Schön, C.-C.; Avramova, V.: Natural alleles of the abscisic acid catabolism gene ZmAbh4 modulate water use efficiency and carbon isotope discrimination in maize. The Plant Cell, koac200 (2022)
23.
Journal Article
Mbebi, A. J.; Breitler, J.-C.; Bordeaux, M.; Sulpice, R.; McHale, M.; Tong, H.; Toniutti, L.; Castillo, J. A.; Bertrand, B.; Nikoloski, Z.: A comparative analysis of genomic and phenomic predictions of growth-related traits in three-way coffee hybrids. G3: Genes, Genomes, Genetics, jkac170 (2022)
24.
Journal Article
Alshareef, N. O.; Otterbach, S. L.; Allu, A. D.; Woo, Y. H.; de Werk, T.; Kamranfar, I.; Mueller-Roeber, B.; Tester, M.; Balazadeh, S.; Schmöckel, S. M.: NAC transcription factors ATAF1 and ANAC055 affect the heat stress response in Arabidopsis. Scientific Reports 12, 11264 (2022)
25.
Journal Article
Dong, Y.; Wu, M.; Zhang, Q.; Fu, J.; Loiacono, F.V.; Yang, Y.; Wang, Z.; Li, S.; Chang, L.; Bock, R. et al.; Zhang, J.: Control of a sap-sucking insect pest by plastid-mediated RNA interference. Molecular Plant 15 (7), pp. 1176 - 1191 (2022)
26.
Journal Article
Hamon-Josse, M.; Villaecija-Aguilar, J.; Ljung, K.; Leyser, O.; Gutjahr, C.; Bennett, T.: KAI2 regulates seedling development by mediating light-induced remodelling of auxin transport. New Phytologist 235 (1), pp. 126 - 140 (2022)
27.
Journal Article
Huß, S.; Judd, R. S.; Koper, K.; Maeda, H. A.; Nikoloski, Z.: An automated workflow that generates atom mappings for large scale metabolic models and its application to Arabidopsis thaliana. The Plant Journal (2022)
28.
Journal Article
Rivas, F.J.M.; Blanco-Portales, R.; Moyano, E.; Alseekh, S.; Caballero, J. L.; Schwab, W.; Fernie, A. R.; Muñoz-Blanco, J.; Molina-Hidalgo, F. J.: Strawberry fruit FanCXE1 carboxylesterase is involved in the catabolism of volatile esters during the ripening process. Horticulture Research 9, uhac095 (2022)
29.
Journal Article
Sageman-Furnas, K.; Nurmi, M.; Contag, M.; Plötner, B.; Alseekh, S.; Wiszniewski, A.A.G.; Fernie, A. R.; Smith, L. M.; Laitinen, R. A.: A. thaliana Hybrids Develop Growth Abnormalities Through Integration of Stress, Hormone and Growth Signalling. Plant and Cell Physiology 63 (7), pp. 944 - 954 (2022)
30.
Journal Article
Vyse, K.; Schaarschmidt, S.; Erban, A.; Kopka, J.; Zuther, E.: Specific CBF transcription factors and cold-responsive genes fine-tune the early triggering response after acquisition of cold priming and memory. Physiologia Plantarum 174 (4), e13740 (2022)
31.
Journal Article
Medeiros, D.B.; Ishihara, H.; Guenther, M.; Rosado-Souza, L.; Fernie, A. R.; Stitt, M.; Arrivault, S.: 13CO2 Labelling Kinetics in Maize Reveal Impaired Efficiency of C4 Photosynthesis under Low Irradiance. Plant Physiology, kiac306 (2022)
32.
Journal Article
Kariñho-Betancourt, E.; Carlson, D.; Hollister, J.; Fischer, A.; Greiner, S.; Johnson, M. T. J.: The evolution of multi-gene families and metabolic pathways in the evening primroses (Oenothera: Onagraceae): A comparative transcriptomics approach. PLoS One 17 (6), e0269307 (2022)
33.
Journal Article
Batista-Silva, W.; de Oliveira; Carvalho, A.; Oliveira Martins, A.; Siqueira, J. A.; Rodrigues-Salvador, A.; Omena-Garcia, R. P.; Medeiros, D.B.; Peres, L. E. P.; Ribeiro, D. M. et al.; Zsögön, A.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W. L.: Reduced auxin signalling through the cyclophilin DIAGEOTROPICA impacts tomato fruit development and metabolism during ripening. Journal of Experimental Botany 73 (12), pp. 4113 - 4128 (2022)
34.
Journal Article
Chen, B.; Maas, L.; Figueiredo, D.D.; Zhong, Y.; Reis, R.; Li, M.; Horstman, A.; Riksen, T.; Weemen, M.; Liu, H. et al.; Siemons, C.; Chen, S.; Angenent, G. C.; Boutilier, K.: BABY BOOM regulates early embryo and endosperm development. Proceedings of the National Academy of Sciences of the United States of America 119 (25), e2201761119 (2022)
35.
Journal Article
Palos, K.; Dittrich, A.; Yu, L.; Brock, J.; Railey, C.; Wu, H.; Sokolowska, E.; Skirycz, A.; Hsu, P.; Gregory, B. et al.; Lyons, E.; Beilstein, M.; Nelson, A.: Identification and functional annotation of long intergenic non-coding RNAs in Brassicaceae. The Plant Cell, koac166 (2022)
36.
Journal Article
Ralevski, A.; Apelt, F.; Olas, J.; Mueller-Roeber, B.; Rugarli, E.; Kragler, F.; Horvath, T.: Plant mitochondrial FMT and its mammalian homolog CLUH controls development and behavior in Arabidopsis and locomotion in mice. Cellular and Molecular Life Sciences 79 (6), 334 (2022)
37.
Journal Article
Zhang, Y.; Fernie, A. R.: Dynamically regulating metabolic fluxes with synthetic metabolons. Trends in Biotechnology (2022)
38.
Journal Article
Liu, Z.; Østerlund, I.; Ruhnow, F.; Cao, Y.; Huang, G.; Cai, W.; Zhang, J.; Liang, W.; Nikoloski, Z.; Persson, S. et al.; Zhang, D.: Fluorescent cytoskeletal markers reveal associations between the actin and microtubule cytoskeleton in rice cells. Development 149 (12), dev.200415 (2022)
39.
Journal Article
Tabatabaei, I.; Alseekh, S.; Shahid, M.; Leniak, E.; Wagner, M.; Mahmoudi, H.; Thushar, S.; Fernie, A. R.; Murphy, K. M.; Schmöckel, S. M. et al.; Tester, M.; Mueller-Roeber, B.; Skirycz, A.; Balazadeh, S.: The diversity of quinoa morphological traits and seed metabolic composition. Scientific Data 9 (1), 323 (2022)
40.
Journal Article
Salem, M.A.; El-Shiekh, R. A.; Fernie, A. R.; Alseekh, S.; Zayed, A.: Metabolomics-based profiling for quality assessment and revealing the impact of drying of Turmeric (Curcuma longa L.). Scientific Reports 12 (1), 10288 (2022)
41.
Journal Article
Del-Saz, N.; Iglesias-Sanchez, A.; Alonso-Forn, D.; Lopez-Gomez, M.; Palma, F.; Clemente-Moreno, M.; Fernie, A. R.; Ribas-Carbo, M.; Florez-Sarasa, I.: The Lack of Alternative Oxidase 1a Restricts in vivo Respiratory Activity and Stress-Related Metabolism for Leaf Osmoprotection and Redox Balancing Under Sudden Acute Water and Salt Stress in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 13, 833113 (2022)
42.
Journal Article
Yokoyama, R.; de Oliveira, M.V.V.; Takeda-Kimura, Y.; Ishihara, H.; Alseekh, S.; Arrivault, S.; Kukshal, V.; Jez, J.M.; Stitt, M.; Fernie, A. R. et al.; Maeda, H.A.: Point mutations that boost aromatic amino acid production and CO2 assimilation in plants. Science Advances 8 (23), eabo3416 (2022)
43.
Journal Article
Jiang, C.; Sun, J.; Li, R.; Yan, S.; Chen, W.; Guo, L.; Qin, G.; Wang, P.; Luo, C.; Huang, W. et al.; Zhang, Q.; Fernie, A. R.; Jackson, D.; Li, X.; Yan, J.: A reactive oxygen species burst causes haploid induction in maize. Molecular Plant 15 (6), pp. 943 - 955 (2022)
44.
Journal Article
Alseekh, S.; Zhu, F.; Vallarino, J. G.; Sokolowska, E.; Yoshida, T.; Bergmann, S.; Wendenburg, R.; Bolze, A.; Skirycz, A.; Avin-Wittenberg, T. et al.; Fernie, A. R.: Autophagy modulates the metabolism and growth of tomato fruit during development. Horticulture Research, uhac129 (2022)
45.
Journal Article
Bohra, A.; Tiwari, A.; Kaur, P.; Ganie, S. A.; Raza, A.; Roorkiwal, M.; Mir, R. R.; Fernie, A. R.; Smýkal, P.; Varshney, R. K.: The Key to the Future Lies in the Past: Insights from Grain Legume Domestication and Improvement Should Inform Future Breeding Strategies. Plant and Cell Physiology, pcac086 (2022)
46.
Journal Article
Fernie, A. R.: Cultivated strawberry HANABA TARANU: a tale of transcription factors, raging hormones, and asexual reproduction. The Plant Journal 110 (5), pp. 1235 - 1236 (2022)
47.
Journal Article
Fischer, A.; Dotzek, J.; Walther, D.; Greiner, S.: Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization. NAR: genomics and bioinformatics 4 (2), lqac027 (2022)
48.
Journal Article
Hong, J.; Rosental, L.; Xu, Y.; Xu, D.; Orf, I.; Wang, W.; Hu, Z.; Su, S.; Bai, S.; Ashraf, M. et al.; Hu, C.; Zhang, C.; Li, Z.; Xu, J.; Liu, Q.; Zhang, H.; Zhang, F.; Luo, Z.; Chen, M.; Chen, X.; Betts, N.; Fernie, A. R.; Liang, W.; Chen, G.; Brotman, Y.; Zhang, D.; Shi, J.: Genetic architecture of seed glycerolipids in Asian cultivated rice. Plant, Cell and Environment (2022)
49.
Journal Article
Li, P.; Ye, Z.; Fu, J.; Xu, Y.; Shen, Y.; Zhang, Y.; Tang, D.; Li, P.; Zuo, H.; Tong, W. et al.; Wang, S.; Fernie, A. R.; Zhao, J.: CsMYB184 regulates caffeine biosynthesis in tea plants. Plant Biotechnology Journal 20 (6), pp. 1012 - 1014 (2022)
50.
Journal Article
Paschoal, D.; Costa, J. L.; da Silva, E. M.; da Silva, F. B.; Capelin, D.; Ometto, V.; Aricetti, J. A.; Carvalho, G. G.; Pimpinato, R. F.; de Oliveira, R. F. et al.; Carrera, E.; López-Díaz, I.; Rossi, M. L.; Tornisielo, V.; Caldana, C.; Riano-Pachon, D. M.; Cesarino, I.; Teixeira, P. J. P. L.; Figueira, A.: Infection by Moniliophthora perniciosa reprograms Micro-Tom physiology, establishes a sink and increases secondary cell wall synthesis. Journal of Experimental Botany 73 (11), pp. 3651 - 3670 (2022)
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