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Journal Article (186)

1.
Journal Article
Abdelnur, P. V.; Caldana, C.; Martins, M. C. M.: Metabolomics applied in bioenergy. Chemical and Biological Technologies in Agriculture 1 (1), 22 (2014)
2.
Journal Article
Allan, E.; Bossdorf, O.; Dormann, C. F.; Prati, D.; Gossnerd, M.; Tscharntke, T.; Blüthgen, N.; Bellach, M.; Birkhofer, K.; Boch, S. et al.; Böhm, S.; Börschig, C.; Chatzinotas, A.; Christ, S.; Daniel, R.; Diekötter, T.; Fischerm, C.; Friedl, T.; Glaser, K.; Hallmann, C.; Hodac, L.; Hölzel, N.; Jung, K.; Klein, A. M.; Klaus, V. H.; Kleinebecker, T.; Krauss, J.; Lange, M.; Morriss, E. K.; Müller, J.; Nacke, H.; Pašalic, E.; Rilligt, M. C.; Rothenwöhrer, C.; Schall, P.; Scherber, C.; Schulze, W. X.; Socher, S.; Steckel, J.; Steffan-Dewenter, I.; Türcke, M.; Weiner, C. N.; Werner, M.; Westphal, C.; Wolters, V.; Wubet, T.; Gockel, S.; Gorke, M.; Hemp, A.; Renner, S. C.; Schöning, I.; Pfeiffer, S.; König-Ries, B.; Buscot, F.; Linsenmair, K.-E.; Schulze, E. D.; Weisser, W. W.; Fischer, M.: Interannual variation in land-use intensity enhances grassland multidiversity. Proceedings of the National Academy of Sciences of the United States of America 111 (1), pp. 308 - 313 (2014)
3.
Journal Article
Allu, A. D.; Soja, A. M.; Wu, A.; Szymanski, J.; Balazadeh, S.: Salt stress and senescence: identification of cross-talk regulatory components. Journal of Experimental Botany 65 (14), pp. 3993 - 4008 (2014)
4.
Journal Article
Andriankaja, M. E.; Danisman, S.; Mignolet-Spruyt, L. F.; Claeys, H.; Kochanke, I.; Vermeersch, M.; De Milde, L.; De Bodt, S.; Storme, V.; Skirycz, A. et al.; Maurer, F.; Bauer, P.; Muhlenbock, P.; Van Breusegem, F.; Angenent, G. C.; Immink, R. G. H.; Inze, D.: Transcriptional coordination between leaf cell differentiation and chloroplast development established by TCP20 and the subgroup Ib bHLH transcription factors. Plant Molecular Biology 85 (3), pp. 233 - 245 (2014)
5.
Journal Article
Araujo, W. L.; Martins, A. O.; Fernie, A. R.; Tohge, T.: 2-Oxoglutarate: linking TCA cycle function with amino acid, glucosinolate, flavonoid, alkaloid, and gibberellin biosynthesis. Frontiers in Plant Science 5, p. 552 - 552 (2014)
6.
Journal Article
Araujo, W. L.; Nunes-Nesi, A.; Fernie, A. R.: On the role of plant mitochondrial metabolism and its impact on photosynthesis in both optimal and sub-optimal growth conditions. Photosynthesis research 119 (1-2), pp. 141 - 156 (2014)
7.
Journal Article
Araujo, W. L.; Tohge, T.; Nunes-Nesi, A.; Obata, T.; Fernie, A. R.: Analysis of Kinetic Labeling of Amino Acids and Organic Acids by GC-MS. Methods in molecular biology 1090, pp. 107 - 119 (2014)
8.
Journal Article
Armbruster, U.; Carrillo, L. R.; Venema, K.; Pavlovic, L.; Schmidtmann, E.; Kornfeld, A.; Jahns, P.; Berry, J. A.; Kramer, D. M.; Jonikas, M. C.: Ion antiport accelerates photosynthetic acclimation in fluctuating light environments. Nature Communications 5, 5439 (2014)
9.
Journal Article
Arnold, A.; Nikoloski, Z.: In search for an accurate model of the photosynthetic carbon metabolism. Mathematics and Computers in Simulation 96, pp. 171 - 194 (2014)
10.
Journal Article
Arnold, A.; Nikoloski, Z.: Bottom-up Metabolic Reconstruction of Arabidopsis and Its Application to Determining the Metabolic Costs of Enzyme Production. Plant Physiology 165 (3), pp. 1380 - 1391 (2014)
11.
Journal Article
Arrivault, S.; Guenther, M.; Florian, A.; Encke, B.; Feil, R.; Vosloh, D.; Lunn, J. E.; Sulpice, R.; Fernie, A. R.; Stitt, M. et al.; Schulze, W. X.: Dissecting the Subcellular Compartmentation of Proteins and Metabolites in Arabidopsis Leaves Using Non-aqueous Fractionation. Molecular and Cellular Proteomics 13 (9), pp. 2246 - 2259 (2014)
12.
Journal Article
Avin-Wittenberg, T.; Fernie, A. R.: At Long Last: Evidence for Pexophagy in Plants. Molecular Plant 7 (8), pp. 1257 - 1260 (2014)
13.
Journal Article
Ay, N.; Raum, U.; Balazadeh, S.; Seidensticker, T.; Fischer, A.; Reuter, G.; Humbeck, K.: Regulatory Factors of Leaf Senescence are Affected in Arabidopsis Plants Overexpressing the Histone Methyltransferase SUVH2. Journal of Plant Growth Regulation 33 (1), pp. 119 - 136 (2014)
14.
Journal Article
Balazadeh, S.: Stay-Green Not Always Stays Green. Molecular Plant 7 (8), pp. 1264 - 1266 (2014)
15.
Journal Article
Balazadeh, S.; Schildhauer, J.; Araujo, W. L.; Munne-Bosch, S.; Fernie, A. R.; Proost, S.; Humbeck, K.; Mueller-Roeber, B.: Reversal of senescence by N resupply to N-starved Arabidopsis thaliana: transcriptomic and metabolomic consequences. Journal of Experimental Botany 65 (14), pp. 3975 - 3992 (2014)
16.
Journal Article
Bastias, A.; Yanez, M.; Osorio, S.; Arbona, V.; Gomez-Cadenas, A.; Fernie, A. R.; Casaretto, J. A.: The transcription factor AREB1 regulates primary metabolic pathways in tomato fruits. Journal of Experimental Botany 65 (9), pp. 2351 - 63 (2014)
17.
Journal Article
Bellucci, E.; Bitocchi, E.; Ferrarini, A.; Benazzo, A.; Biagetti, E.; Klie, S.; Minio, A.; Rau, D.; Rodriguez, M.; Panziera, A. et al.; Venturini, L.; Attene, G.; Albertini, E.; Jackson, S. A.; Nanni, L.; Fernie, A. R.; Nikoloski, Z.; Bertorelle, G.; Delledonne, M.; Papa, R.: Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. The Plant Cell 26 (5), pp. 1901 - 1912 (2014)
18.
Journal Article
BENINA, M.; Ribeiro, D. M.; GECHEV, T. S.; Mueller-Roeber, B.; Schippers, J. H. M.: A cell type-specific view on the translation of mRNAs from ROS-responsive genes upon paraquat treatment of Arabidopsis thaliana leaves. Plant, Cell and Environment 38 (2), pp. 349 - 363 (2014)
19.
Journal Article
Bermúdez, L.; de Godoy, F.; Balder, P.; Demarco, D.; Osorio, S.; Quadrana, L.; Almeida, J.; Asis, R.; Gibon, Y.; Fernie, A. R. et al.; Rossi, M.; Carrari, F.: Silencing of the tomato Sugar Partitioning Affecting protein (SPA), modifies sink strength through a shift in leaf sugar metabolism. The Plant Journal 77 (5), pp. 676 - 687 (2014)
20.
Journal Article
Bock, R.: Genetic engineering of the chloroplast: novel tools and new applications. Current Opinion in Biotechnology 26, pp. 7 - 13 (2014)
21.
Journal Article
Bolger, A. M.; Lohse, M.; Usadel, B.: Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30 (15), pp. 2114 - 2120 (2014)
22.
Journal Article
Bolger, A. M.; Scossa, F.; Bolger, A. M.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E. A.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S. A.; Schijlen, E.; Jimenez-Gomez, J. M.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L. R.; Maloof, J. N.; Sinha, N.; van Ham, R. C. H. J.; Lankhorst, R. K.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J. K. C.; Zamir, D.; Carrari, F. F.; Giovannoni, J. J.; Weigel, D.; Usadel, B.; Fernie, A. R.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46 (9), pp. 1034 - 1038 (2014)
23.
Journal Article
Bolger, M. E.; Weisshaar, B.; Scholz, U.; Stein, N.; Usadel, B.; Mayer, K. F.: Plant genome sequencing — applications for crop improvement. Current Opinion in Biotechnology 26, pp. 31 - 37 (2014)
24.
Journal Article
Bozek, K.; Wei, Y.; Yan, Z.; Liu, X.; Xiong, J.; Sugimoto, M.; Tomita, M.; Paeaebo, S.; Pieszek, R.; Sherwood, C. C. et al.; Hof, P. R.; Ely, J. J.; Steinhauser, D.; Willmitzer, L.; Bangsbo, J.; Hansson, O.; Call, J.; Giavalisco, P.; Khaitovich, P.: Exceptional Evolutionary Divergence of Human Muscle and Brain Metabolomes Parallels Human Cognitive and Physical Uniqueness. PLoS Biology 12 (5), e1001871 (2014)
25.
Journal Article
Braun, H.-P.; Binder, S.; Brennicke, A.; Eubel, H.; Fernie, A. R.; Finkemeier, I.; Klodmann, J.; König, A.-C.; Kühn, K.; Meyer, E. H. et al.; Obata, T.; Schwarzländer, M.; Takenaka, M.; Zehrmann, A.: The life of plant mitochondrial complex I. Mitochondrion 19, Part B (0), pp. 295 - 313 (2014)
26.
Journal Article
Breuer, D.; Ivakov, A.; Sampathkumar, A.; Hollandt, F.; Persson, S.; Nikoloski, Z.: Quantitative analyses of the plant cytoskeleton reveal underlying organizational principles. Interface: Journal of the Royal Society 11 (97), 20140362 (2014)
27.
Journal Article
Breuer, D.; Nikoloski, Z.: img2net: automated network-based analysis of imaged phenotypes. Bioinformatics 30 (22), pp. 3291 - 2 (2014)
28.
Journal Article
Breuer, D.; Timme, M.; Memmesheimer, R.-M.: Statistical Physics of Neural Systems with Nonadditive Dendritic Coupling. Physical Review X 4 (1), 011053 (2014)
29.
Journal Article
Bucher, M.; Hause, B.; Krajinski, F.; Kuester, H.: Through the doors of perception to function in arbuscular mycorrhizal symbioses. New Phytologist 204 (4), pp. 833 - 840 (2014)
30.
Journal Article
Cavalcanti, J. H. F.; Esteves-Ferreira, A. A.; Quinhones, C. G. S.; Pereira-Lima, I. A.; Nunes-Nesi, A.; Fernie, A. R.; Araujo, W. L.: Evolution and functional implications of the tricarboxylic acid cycle as revealed by phylogenetic analysis. Genome biology and evolution 6 (10), pp. 2830 - 48 (2014)
31.
Journal Article
Chae, E.; Bomblies, K.; Kim, S.-T.; Karelina, D.; Zaidem, M.; Ossowski, S.; Martín-Pizarro, C.; Laitinen, R.; Rowan, B.; Tenenboim, H. et al.; Lechner, S.; Demar, M.; Habring-Müller, A.; Lanz, C.; Rätsch, G.; Weigel, D.: Species-wide Genetic Incompatibility Analysis Identifies Immune Genes as Hot Spots of Deleterious Epistasis. Cell 159 (6), pp. 1341 - 1351 (2014)
32.
Journal Article
Chen, S.; Wu, S.; Li, W.; Chen, X.; Dong, X.; Tan, G.; Zhang, H.; Hong, Z.; Zhu, Z.; Chai, Y.: Investigation of the therapeutic effectiveness of active components in Sini decoction by a comprehensive GC/LC-MS based metabolomics and network pharmacology approaches. Molecular BioSystems 10 (12), pp. 3310 - 3321 (2014)
33.
Journal Article
Chew, Y. H.; Wenden, B.; Flis, A.; Mengin, V.; Taylor, J.; Davey, C. L.; Tindal, C.; Thomas, H.; Ougham, H. J.; de Reffye, P. et al.; Stitt, M.; Williams, M.; Muetzelfeldt, R.; Halliday, K. J.; Millar, A. J.: Multiscale digital Arabidopsis predicts individual organ and whole-organism growth. Proceedings of the National Academy of Sciences of the United States of America 111 (39), pp. E4127 - E4136 (2014)
34.
Journal Article
Dang, N. X. D.; Popova, A. V.; Hundertmark, M.; Hincha, D. K.: Functional characterization of selected LEA proteins from Arabidopsis thaliana in yeast and in vitro. Planta 240, pp. 325 - 336 (2014)
35.
Journal Article
Dasgupta, K.; Khadilkar, A.S.; Sulpice, R.; Pant, B.; Scheible, W.-R.; Fisahn, J.; Stitt, M.; Ayre, B.G.: Expression of sucrose transporter cDNAs specifically in companion cells enhances phloem loading and long-distance transport of sucrose but leads to an inhibition of growth and the perception of a phosphate limitation. Plant Physiology 165 (2), pp. 715 - 731 (2014)
36.
Journal Article
Delgado, R.; Munoz, Y.; Pena-Cortes, H.; Giavalisco, P.; Bacigalupo, J.: Diacylglycerol Activates the Light-Dependent Channel TRP in the Photosensitive Microvilli of Drosophila melanogaster Photoreceptors. The Journal of Neuroscience 34 (19), pp. 6679 - 6686 (2014)
37.
Journal Article
Devanathan, S.; Erban, A.; Perez-Torres Jr., R.; Kopka, J.; Makaroff, C. A.: Arabidopsis thaliana Glyoxalase 2-1 Is Required during Abiotic Stress but Is Not Essential under Normal Plant Growth. PLOS ONE 9 (4), e95971 (2014)
38.
Journal Article
Do, P. T.; Drechsel, O.; Heyer, A. G.; Hincha, D. K.; Zuther, E.: Changes in free polyamine levels, expression of polyamine biosynthesis genes, and performance of rice cultivars under salt stress: a comparison with responses to drought. Frontiers in Plant Science 5, p. 182 - 182 (2014)
39.
Journal Article
Eckert, C.; Offenborn, J. N.; Heinz, T.; Armarego-Marriott, T.; Schültke, S.; Zhang, C.; Hillmer, S.; Heilmann, M.; Schumacher, K.; Bock, R. et al.; Heilmann, I.; Kudla, J.: The vacuolar calcium sensors CBL2 and CBL3 affect seed size and embryonic development in Arabidopsis thaliana. The Plant Journal 78 (1), pp. 146 - 156 (2014)
40.
Journal Article
Ehrnthaler, M.; Scharff, L. B.; Fleischmann, T. T.; Hasse, C.; Ruf, S.; Bock, R.: Synthetic Lethality in the Tobacco Plastid Ribosome and Its Rescue at Elevated Growth Temperatures. The Plant Cell 26 (2), pp. 765 - 776 (2014)
41.
Journal Article
Estevez, S.; Nikoloski, Z.: Generalized framework for context-specific metabolic model extraction methods. Frontiers in Plant Science 5, p. 491 - 491 (2014)
42.
Journal Article
Ewald, R.; Hoffmann, C.; Florian, A.; Neuhaus, E.; Fernie, A. R.; Bauwe, H.: Lipoate-Protein Ligase and Octanoyltransferase Are Essential for Protein Lipoylation in Mitochondria of Arabidopsis1[W][OPEN]. Plant Physiology 165 (3), pp. 978 - 990 (2014)
43.
Journal Article
Feher, K.; Lisec, J.; Römisch-Margl, L.; Selbig, J.; Gierl, A.; Piepho, H.-P.; Nikoloski, Z.; Willmitzer, L.: Deducing Hybrid Performance from Parental Metabolic Profiles of Young Primary Roots of Maize by Using a Multivariate Diallel Approach. PLoS ONE 9 (1), e85435 (2014)
44.
Journal Article
Fernandez-Calvino, L.; Osorio, S.; Hernandez, M. L.; Hamada, I. B.; Del Toro, F. J.; Donaire, L.; Yu, A.; Bustos, R.; Fernie, A. R.; Martinez-Rivas, J. M. et al.; Llave, C.: Virus-Induced Alterations in Primary Metabolism Modulate Susceptibility to Tobacco rattle virus in Arabidopsis. Plant Physiology 166 (4), pp. 1821 - 38 (2014)
45.
Journal Article
Florian, A.; Nikoloski, Z.; Sulpice, R.; Timm, S.; Araujo, W. L.; Tohge, T.; Bauwe, H.; Fernie, A. R.: Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant 7 (5 Special Issue), pp. 893 - 911 (2014)
46.
Journal Article
Florian, A.; Timm, S.; Nikoloski, Z.; Tohge, T.; Bauwe, H.; Araujo, W. L.; Fernie, A. R.: Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 56 (9 - SI), pp. 941 - 959 (2014)
47.
Journal Article
Fristed, R.; Scharff, L. B.; Clarke, C.; Wang, Q.; Lin, C.; Merchant, S.; Bock, R.: RBF1, a Plant Homolog of the Bacterial Ribosome-Binding Factor RbfA, Acts in Processing of the Chloroplast 16S Ribosomal RNA. Plant Physiology 164 (1), pp. 201 - 215 (2014)
48.
Journal Article
Fuentes, I.; Stegemann, S.; Golczyk, H.; Karcher, D.; Bock, R.: Horizontal genome transfer as an asexual path to the formation of new species. Nature 511 (7508), pp. 232 - 235 (2014)
49.
Journal Article
Fujikura, U.; Elsaesser, L.; Breuninger, H.; Sanchez-Rodriguez, C.; Ivakov, A.; Laux, T.; Findlay, K.; Persson, S.; Lenhard, M.: Atkinesin-13A Modulates Cell-Wall Synthesis and Cell Expansion in Arabidopsis thaliana via the THESEUS1 Pathway. PLoS Genetics 10 (9), e1004627 (2014)
50.
Journal Article
Fukushima, A.; Kusano, M.; Mejia, R. F.; Iwasa, M.; Kobayashi, M.; Hayashi, N.; Watanabe-Takahashi, A.; Narisawa, T.; Tohge, T.; Hur, M. et al.; Wurtele, E. S.; Nikolau, B. J.; Saito, K.: Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis. Plant Physiology 165 (3), pp. 948 - 961 (2014)
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