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Journal Article (171)

1.
Journal Article
Agren, J. A.; Greiner, S.; Johnson, M. T. J.; Wright, S. I.: No evidence that sex and transposable elements drive genome size variation in evening primroses. Evolution 69 (4), pp. 1053 - 1062 (2015)
2.
Journal Article
Agudelo-Romero, P.; Erban, A.; Rego, C.; Carbonell-Bejerano, P.; Nascimento, T.; Sousa, L.; Martinez-Zapater, J. M.; Kopka, J.; Fortes, A. M.: Transcriptome and metabolome reprogramming in Vitis vinifera cv. Trincadeira berries upon infection with Botrytis cinerea. Journal of Experimental Botany 66 (7), pp. 1769 - 1785 (2015)
3.
Journal Article
Allorent, G.; Osorio, S.; Vu, J. L.; Falconet, D.; Jouhet, J.; Kuntz, M.; Fernie, A. R.; Lerbs-Mache, S.; Macherel, D.; Courtois, F. et al.; Finazzi, G.: Adjustments of embryonic photosynthetic activity modulate seed fitness in Arabidopsis thaliana. New Phytologist 205 (2), pp. 707 - 719 (2015)
4.
Journal Article
Alseekh, S.; Tohge, T.; Wendenburg, R.; Scossa, F.; Omranian, N.; Li, J.; Kleessen, S.; Giavalisco, P.; Pleban, T.; Mueller-Roeber, B. et al.; Zamir, D.; Nikoloski, Z.; Fernie, A. R.: Identification and mode of inheritance of quantitative trait Loci for secondary metabolite abundance in tomato. The Plant Cell 27 (3), pp. 485 - 512 (2015)
5.
Journal Article
Amaya, I.; Osorio, S.; Martinez-Ferri, E.; Lima-Silva, V.; Doblas, V. G.; Fernandez-Munoz, R.; Fernie, A. R.; Botella, M. A.; Valpuesta, V.: Increased antioxidant capacity in tomato by ectopic expression of the strawberry D-galacturonate reductase gene. Biotechnology Journal 10 (3), pp. 490 - 500 (2015)
6.
Journal Article
Anoman, A. D.; Munoz-Bertomeu, J.; Rosa-Tellez, S.; Flores-Tornero, M.; Serrano, R.; Bueso, E.; Fernie, A. R.; Segura, J.; Ros, R.: Plastidial Glycolytic Glyceraldehyde-3-Phosphate Dehydrogenase Is an Important Determinant in the Carbon and Nitrogen Metabolism of Heterotrophic Cells in Arabidopsis. Plant Physiology 169 (3), pp. 1619 - 1637 (2015)
7.
Journal Article
Apelt, F.; Breuer, D.; Nikoloski, Z.; Stitt, M.; Kragler, F.: Phytotyping(4D): a light-field imaging system for non-invasive and accurate monitoring of spatio-temporal plant growth. The Plant Journal 82 (4), pp. 693 - 706 (2015)
8.
Journal Article
Arnold, A.; Sajitz-Hermstein, M.; Nikoloski, Z.: Effects of Varying Nitrogen Sources on Amino Acid Synthesis Costs in Arabidopsis thaliana under Different Light and Carbon-Source Conditions. PLoS One 10 (2), e0116536 (2015)
9.
Journal Article
Arrivault, S.; Guenther, M.; Fry, S. C.; Fünfgeld, M. F.F.; Veye, D.; Mettler-Altmann, T.; Stitt, M.; Lunn, J. E.: Synthesis and Use of Stable-Isotope-Labeled Internal Standards for Quantification of Phosphorylated Metabolites by LC-MS/MS. Analytical Chemistry 87 (13), pp. 6896 - 6904 (2015)
10.
Journal Article
Auer, J. S.; Nagel, A. C.; Schulz, A.; Wahl, V.; Preiss, A.: MAPK-dependent phosphorylation modulates the activity of Suppressor of Hairless in Drosophila. Cellular Signalling 27 (1), pp. 115 - 124 (2015)
11.
Journal Article
Auer, J. S.; Nagel, A. C.; Schulz, A.; Wahl, V.; Preiss, A.: Local overexpression of Su(H)-MAPK variants affects Notch target gene expression and adult phenotypes in Drosophila. Data in Brief 5 (Supplement C), pp. 852 - 863 (2015)
12.
Journal Article
Avin-Wittenberg, T.; Bajdzienko, K.; Wittenberg, G.; Alseekh, S.; Tohge, T.; Bock, R.; Giavalisco, P.; Fernie, A. R.: Global Analysis of the Role of Autophagy in Cellular Metabolism and Energy Homeostasis in Arabidopsis Seedlings under Carbon Starvation. The Plant Cell 27 (2), pp. 306 - 322 (2015)
13.
Journal Article
Baerenfaller, K.; Massonnet, C.; Hennig, L.; Russenberger, D.; Sulpice, R.; Walsh, S.; Stitt, M.; Granier, C.; Gruissem, W.: A long photoperiod relaxes energy management in Arabidopsis leaf six. Current Plant Biology 2, pp. 34 - 45 (2015)
14.
Journal Article
Bar-Even, A.; Milo, R.; Noor, E.; Tawfik, D. S.: The Moderately Efficient Enzyme: Futile Encounters and Enzyme Floppiness. Biochemistry 54 (32), pp. 4969 - 4977 (2015)
15.
Journal Article
Barahimipour, R.; Strenkert, D.; Neupert, J.; Schroda, M.; Merchant, S. S.; Bock, R.: Dissecting the contributions of GC content and codon usage to gene expression in the model alga Chlamydomonas reinhardtii. The Plant Journal 84 (4), pp. 704 - 717 (2015)
16.
Journal Article
Barbier, F. F.; Lunn, J. E.; Beveridge, C. A.: Ready, steady, go! A sugar hit starts the race to shoot branching. Current Opinion in Plant Biology 25, pp. 39 - 45 (2015)
17.
Journal Article
Barcelos, E.; Rios, S. d. A.; Cunha, R. N. V.; Lopes, R.; Motoike, S. Y.; Babiychuk, E.; Skirycz, A.; Kushnir, S.: Oil palm natural diversity and the potential for yield improvement. Frontiers in Plant Science 6, 190 (2015)
18.
Journal Article
Batushansky, A.; Kirma, M.; Grillich, N.; Pham, P. A.; Rentsch, D.; Galili, G.; Fernie, A. R.; Fait, A.: The transporter GAT1 plays an important role in GABA-mediated carbon-nitrogen interactions in Arabidopsis. Frontiers in Plant Science 6, 785 (2015)
19.
Journal Article
Bauer, C.; Stec, K.; Glintschert, A.; Gruden, K.; Schichor, C.; Or-Guil, M.; Selbig, J.; Schuchhardt, J.: BioMiner: Paving the Way for Personalized Medicine. Cancer informatics 14, pp. 55 - 63 (2015)
20.
Journal Article
Benard, C.; Bernillon, S.; Biais, B.; Osorio, S.; Maucourt, M.; Ballias, P.; Deborde, C.; Colombie, S.; Cabasson, C.; Jacob, D. et al.; Vercambre, G.; Gautier, H.; Rolin, D.; Genard, M.; Fernie, A. R.; Gibon, Y.; Moing, A.: Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships. Journal of Experimental Botany 66 (11), pp. 3391 - 3404 (2015)
21.
Journal Article
Benina, M.; Ribeiro, D. M.; Gechev, T. S.; Mueller-Roeber, B.; Schippers, J. H. M.: A cell type-specific view on the translation of mRNAs from ROS-responsive genes upon paraquat treatment of Arabidopsis thaliana leaves. Plant, Cell and Environment 38 (2- SI), pp. 349 - 363 (2015)
22.
Journal Article
Bielecka, M.; Watanabe, M.; Morcuende, R.; Scheible, W.-R.; Hawkesford, M. J.; Hesse, H.; Hoefgen, R.: Transcriptome and metabolome analysis of plant sulphate starvation and resupply provides novel information on transcriptional regulation of metabolism associated with sulphur, nitrogen and phosphorus nutritional responses in Arabidopsis. Frontiers in Plant Science 5, 805 (2015)
23.
Journal Article
Bock, R.: Engineering plastid genomes: methods, tools, and applications in basic research and biotechnology. Annual Review of Plant Biology 66, pp. 211 - 241 (2015)
24.
Journal Article
Bordag, N.; Klie, S.; Juerchott, K.; Vierheller, J.; Schiewe, H.; Albrecht, V.; Tonn, J.-C.; Schwartz, C.; Schichor, C.; Selbig, J.: Glucocorticoid (dexamethasone)-induced metabolome changes in healthy males suggest prediction of response and side effects. Scientific Reports 5, 15954 (2015)
25.
Journal Article
Bozek, K.; Wei, Y.; Yan, Z.; Liu, X.; Xiong, J.; Sugimoto, M.; Tomita, M.; Paeaebo, S.; Sherwood, C. C.; Hof, P. R. et al.; Ely, J. J.; Li, Y.; Steinhauser, D.; Willmitzer, L.; Giavalisco, P.; Khaitovich, P.: Organization and Evolution of Brain Lipidome Revealed by Large-Scale Analysis of Human, Chimpanzee, Macaque, and Mouse Tissues. Neuron 85 (4), pp. 695 - 702 (2015)
26.
Journal Article
Breuer, D.; Nikoloski, Z.: DeFiNe: an optimisation-based method for robust disentangling of filamentous networks. Scientific Reports 5, 18267 (2015)
27.
Journal Article
Bromke, M. A.; Hesse, H.: Phylogenetic analysis of methionine synthesis genes from Thalassiosira pseudonana. SpringerPlus 4, 391 (2015)
28.
Journal Article
Bromke, M. A.; Hochmuth, A.; Tohge, T.; Fernie, A. R.; Giavalisco, P.; Burgos, A.; Willmitzer, L.; Brotman, Y.: Liquid chromatography high-resolution mass spectrometry for fatty acid profiling. The Plant Journal 81 (3), pp. 529 - 536 (2015)
29.
Journal Article
Bromke, M. A.; Sabir, J. S.; Alfassi, F. A.; Hajarah, N. H.; Kabli, S. A.; Al-Malki, A. L.; Ashworth, M. P.; Meret, M.; Jansen, R. K.; Willmitzer, L.: Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions. PLoS One 10 (10), e0138965 (2015)
30.
Journal Article
Brown, N. A.; dos Reis, T. F.; Ries, L. N. A.; Caldana, C.; Mah, J.-H.; Yu, J.-H.; Macdonald, J. M.; Goldman, G. H.: G-protein coupled receptor-mediated nutrient sensing and developmental control in Aspergillus nidulans. Molecular Microbiology 98 (3), pp. 420 - 439 (2015)
31.
Journal Article
Bui, L. T.; Giuntoli, B.; Kosmacz, M.; Parlanti, S.; Licausi, F.: Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana. Plant Science 236, pp. 37 - 43 (2015)
32.
Journal Article
Bunik, V. I.; Artiukhov, A.; Kazantsev, A.; Goncalves, R.; Daloso, D. M.; Oppermann, H.; Kulakovskaya, E.; Lukashev, N.; Fernie, A. R.; Brand, M. et al.; Gaunitz, F.: Specific inhibition by synthetic analogs of pyruvate reveals that the pyruvate dehydrogenase reaction is essential for metabolism and viability of glioblastoma cells. Oncotarget 6 (37), pp. 40036 - 40052 (2015)
33.
Journal Article
Castellini, A.; Paltrinieri, D.; Manca, V.: MP-GeneticSynth: inferring biological network regulations from time series. Bioinformatics (Oxford, England) 31 (5), pp. 785 - 787 (2015)
34.
Journal Article
Chew, Y. H.; Wenden, B.; Flis, A.; Mengin, V.; Taylor, J.; Davey, C. L.; Tindal, C.; Thomas, H.; Ougham, H. J.; de Reffye, P. et al.; Stitt, M.; Williams, M.; Muetzelfeldt, R.; Halliday, K. J.; Millar, A. J.: Multiscale digital Arabidopsis predicts individual organ and whole-organism growth (vol 111, pg E4127, 2014). Proceedings of the National Academy of Sciences of the United States of America 112 (19), E2556 (2015)
35.
Journal Article
Childs, D.; Grimbs, S.; Selbig, J.: Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patterns. Bioinformatics 31 (12), pp. i214 - i220 (2015)
36.
Journal Article
Colling, J.; Tohge, T.; De Clercq, R.; Brunoud, G.; Vernoux, T.; Fernie, A. R.; Makunga, N. P.; Goossens, A.; Pauwels, L.: Overexpression of the Arabidopsis thaliana signalling peptide TAXIMIN1 affects lateral organ development. Journal of Experimental Botany 66 (17 ), pp. 5337 - 5349 (2015)
37.
Journal Article
Cross, J. M.; Darrah, C.; Oraguzie, N.; Ahmadi, N.; Skirycz, A.: Editorial: Natural diversity in the new millennium. Frontiers in Plant Science 6, 897 (2015)
38.
Journal Article
Cui, X.; Lv, Y.; Chen, M.; Nikoloski, Z.; Twell, D.; Zhang, D.: Young Genes out of the Male: An Insight from Evolutionary Age Analysis of the Pollen Transcriptome. Molecular Plant 8 (6), pp. 935 - 945 (2015)
39.
Journal Article
Curto, M.; Krajinski, F.; Kuester, H.; Rubiales, D.: Plant Defense Responses in Medicago truncatula Unveiled by Microarray Analysis. Plant Molecular Biology Reporter 33 (3), pp. 569 - 583 (2015)
40.
Journal Article
Curto, M.; Krajinski, F.; Schlereth, A.; Rubiales, D.: Transcriptional profiling of Medicago truncatula during Erysiphe pisi infection. Frontiers in Plant Science 6, 517 (2015)
41.
Journal Article
Daloso, D. M.; Antunes, W. C.; Pinheiro, D. P.; Waquim, J. P.; Araujo, W. L.; Loureiro, M. E.; Fernie, A. R.; Williams, T. C. R.: Tobacco guard cells fix CO2 by both Rubisco and PEPcase while sucrose acts as a substrate during light-induced stomatal opening. Plant, Cell and Environment 38 (11), pp. 2353 - 2371 (2015)
42.
Journal Article
Daloso, D. M.; Müller, K.; Obata, T.; Florian, A.; Tohge, T.; Bottcher, A.; Riondet, C.; Banat, L.; Carrari, F.; Nunes-Nesi, A. et al.; Buchanan, B. B.; Reichheld, J.-P.; Araujo, W. L.; Fernie, A. R.: Thioredoxin, a master regulator of the tricarboxylic acid cycle in plant mitochondria. Proceedings of the National Academy of Sciences of the USA 112 (11), pp. E1392 - E1400 (2015)
43.
Journal Article
Delorge, I.; Figueroa, C. M.; Feil, R.; Lunn, J. E.; Van Dijck, P.: Trehalose-6-phosphate synthase 1 is not the only active TPS in Arabidopsis thaliana. Biochemical Journal 466, pp. 283 - 290 (2015)
44.
Journal Article
Dobon, A.; Vicente Canet, J.; Garcia-Andrade, J.; Angulo, C.; Neumetzler, L.; Persson, S.; Vera, P.: Novel Disease Susceptibility Factors for Fungal Necrotrophic Pathogens in Arabidopsis. PLoS Pathogens 11 (4), 1004800 (2015)
45.
Journal Article
Dobritzsch, S.; Weyhe, M.; Schubert, R.; Dindas, J.; Hause, G.; Kopka, J.; Hause, B.: Dissection of jasmonate functions in tomato stamen development by transcriptome and metabolome analyses. BMC Biology 13, 28 (2015)
46.
Journal Article
Duan, G. Y.; Walther, D.: The Roles of Post-translational Modifications in the Context of Protein Interaction Networks. PLoS Computational Biology 11 (2), e1004049 (2015)
47.
Journal Article
Duan, G. Y.; Walther, D.: Computational phosphorylation network reconstruction: methods and resources. Methods in Molecular Biology 1306, pp. 177 - 194 (2015)
48.
Journal Article
Dyson, B. C.; Allwood, J. W.; Feil, R.; Xu, Y.; Miller, M.; Bowsher, C. G.; Goodacre, R.; Lunn, J. E.; Johnson, G. N.: Acclimation of metabolism to light in Arabidopsis thaliana: the glucose 6-phosphate/phosphate translocator GPT2 directs metabolic acclimation. Plant, Cell and Environment 38 (7), pp. 1404 - 1417 (2015)
49.
Journal Article
Eastmond, P. J.; Astley, H. M.; Parsley, K.; Aubry, S.; Williams, B. P.; Menard, G. N.; Craddock, C. P.; Nunes-Nesi, A.; Fernie, A. R.; Hibberd, J. M.: Arabidopsis uses two gluconeogenic gateways for organic acids to fuel seedling establishment. Nature Communications 6, 6659 (2015)
50.
Journal Article
Emadpour, M.; Karcher, D.; Bock, R.: Boosting riboswitch efficiency by RNA amplification. Nucleic Acids Research 43 (10), e66 (2015)
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