Publications of M. Arend

Yuan, Y.; Iannetta, A.; Kim, M.; Sadecki, P.; Arend, M.; Tsichla, A.; Ruiz-Sola, M.; Kepesidis, G.; Falconet, D.; Thevenon, E. et al.; Tardif, M.; Brugière, S.; Couté, Y.; Kleman, J.; Sizova, I.; Schilling, M.; Jouhet, J.; Hegemann, P.; Li-Beisson, Y.; Nikoloski, Z.; Bastien, O.; Hicks, L.; Petroutsos, D.: Phototropin connects blue light perception to starch metabolism in green algae. Nature Communications 16, 2545 (2025)

Arend, M.; Yuan, Y.; Ruiz-Sola, M.Á.; Omranian, N.; Nikoloski, Z.; Petroutsos, D.: Widening the landscape of transcriptional regulation of green algal photoprotection. Nature Communications 14 (1), 2687 (2023)

Tan, Q.W.; Lim, P.K.; Chen, Z.; Pasha, A.; Provart, N.; Arend, M.; Nikoloski, Z.; Mutwil, M.: Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature Communications 14 (1), 986 (2023)

Moura Ferreira, M.A.D.; Wendering, P.; Arend, M.; Batista da Silveira, W.; Nikoloski, Z.: Accurate prediction of in vivo protein abundances by coupling constraint-based modelling and machine learning. Metabolic Engineering 80, pp. 184 - 192 (2023)

Arend, M.; Zimmer, D.; Xu, R.; Sommer, F.; Mühlhaus, T.; Nikoloski, Z.: Proteomics and constraint-based modelling reveal enzyme kinetic properties of Chlamydomonas reinhardtii on a genome scale. Nature Communications 14 (1), 4781 (2023)

Wendering, P.; Arend, M.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Data integration across conditions improves turnover number estimates and metabolic predictions. Nature Communications 14, 1485 (2023)

Águila Ruiz-Sola, M.; Flori, S.; Yuan, Y.; Villain, G.; Sanz-Luque, E.; Redekop, P.; Tokutsu, R.; Küken, A.; Tsichla, A.; Kepesidis, G. et al.; Allorent, G.; Arend, M.; Iacono, F.; Finazzi, G.; Hippler, M.; Nikoloski, Z.; Minagawa, J.; Grossman, A. R.; Petroutsos, D.: Light-independent regulation of algal photoprotection by CO2 availability. Nature Communications 14, 1977 (2023)

Arend, M.; Paulitz, E.; Hsieh, Y.; Nikoloski, Z.: Scaling metabolic model reconstruction up to the pan-genome level: A systematic review and prospective applications to photosynthetic organisms. Metabolic Engineering 90, pp. 67 - 77 (2025)