All Publications

Max Planck Institute of Molecular Plant Physiology

Journal Article (4261)

51.

Journal Article

Wenk, S.; Rainaldi, V.; Schann, K.; He, H.; Bouzon, M.; Döring, V.; Lindner, S. N.; Bar-Even, A.: Evolution-assisted engineering of E. coli enables growth on formic acid at ambient CO2 via the Serine Threonine Cycle. Metabolic Engineering 88, pp. 14 - 24 (2025)

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52.

Journal Article

Yuan, Y.; Iannetta, A.; Kim, M.; Sadecki, P.; Arend, M.; Tsichla, A.; Ruiz-Sola, M.; Kepesidis, G.; Falconet, D.; Thevenon, E. et al.; Tardif, M.; Brugière, S.; Couté, Y.; Kleman, J.; Sizova, I.; Schilling, M.; Jouhet, J.; Hegemann, P.; Li-Beisson, Y.; Nikoloski, Z.; Bastien, O.; Hicks, L.; Petroutsos, D.: Phototropin connects blue light perception to starch metabolism in green algae. Nature Communications 16, 2545 (2025)

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53.

Journal Article

Zhang, W.; Tariq, A.; Jia, X.; Yan, J.; Fernie, A. R.; Usadel, B.; Wen, W.: Plant sperm cell sequencing for genome phasing and determination of meiotic crossover points. Nature Protocols 20, pp. 690 - 708 (2025)

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54.

Journal Article

Zhu, Q.; Wijnants, S.; Feil, R.; Genechten, W. V.; Vergauwen, R.; Goethem, O. V.; Lunn, J. E.; Ende, M. V.; Dijck, P. V.: The stress-protectant molecule trehalose mediates fluconazole tolerance in Candida glabrata. Antimicrobial Agents and Chemotherapy 69 (3), e01349-24 (2025)

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55.

Journal Article

Correa Cordoba, S. M.; Burgos, A.; Cuadros-Inostroza, A. C.; Xu, K.; Brotman, Y.; Nikoloski, Z.: A data-integrative modeling approach accurately characterizes the effects of mutations on Arabidopsis lipid metabolism. Plant Physiology 197 (2), kiae615 (2025)

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56.

Journal Article

Das, D.; Varshney, K.; Ogawa, S.; Torabi, S.; Hüttl, R.; Nelson, D. C.; Gutjahr, C.: Ethylene promotes SMAX1 accumulation to inhibit arbuscular mycorrhiza symbiosis. Nature Communications 16 (1), 2025 (2025)

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57.

Journal Article

Figueiredo, Y.G.; Gasparini, K.; Bulut, M.; Fernie, A. R.; Zsögön, A.: The genetic basis of prickle loss in the Solanaceae. Trends in Plant Science 30 (2) (2025)

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58.

Journal Article

Julian, J.; Gao, P.; Del Chiaro, A.; Carlos De La Concepcion, J.; Armengot, L.; Somssich, M.; Duverge, H.; Clavel, M.; Grujic, N.; Kobylinska, R. et al.; Polivka, I.; Besten, M.; Andersen, T.G.; Dank, C.; Korbei, B.; Bachmair, A.; Coll, N.S.; Minina, E.A.; Sprakel, J.; Dagdas, Y.: ATG8ylation of vacuolar membrane protects plants against cell wall damage. Nature Plants 11, pp. 321 - 339 (2025)

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59.

Journal Article

Novello, M.; Bustamante, C.; Svetaz, L.; Goldy, C.; Valentini, G.; Drincovich, M.; Brotman, Y.; Fernie, A. R.; Lara, M.: Integrated Metabolomic, Lipidomic and Proteomic Analysis Define the Metabolic Changes Occurring in Curled Areas in Leaves With Leaf Peach Curl Disease. Plant, Cell and Environment 48 (2), pp. 1179 - 1200 (2025)

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60.

Journal Article

Priego-Cubero, S.; Knoch, E.; Wang, Z.; Alseekh, S.; Braun, K.-H.; Chapman, P.; Fernie, A. R.; Liu, C.; Becker, C.: Subfunctionalization and epigenetic regulation of a biosynthetic gene cluster in Solanaceae. Proceedings of the National Academy of Sciences of the United States of America 122 (8), e2420164122 (2025)

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61.

Journal Article

Rajarathinam, Y.; Wittemeier, L.; Gutekunst, K.; Hagemann, M.; Kopka, J.: Dynamic photosynthetic labeling and carbon-positional mass spectrometry monitor in vivo Rubisco carbon assimilation rates. Plant Physiology 197 (2), kiaf020 (2025)

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62.

Journal Article

Siqueira, J.; Martins, A.; Wakin, T.; Silva, M.; Batista-Silva, W.; Brito, F.; Zsögön, A.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W.: The Modulation of Growth and Metabolism in Solanum lycopersicum Contrast With the Leaf-Specific Regulation of Wild Tomato Species. Plant, Cell and Environment 48 (2), pp. 1201 - 1214 (2025)

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63.

Journal Article

Urrea-Castellanos, R.; Calderan-Rodrigues, M.J.; Artins, A.; Musialak-Lange, M.; Macharanda-Ganesh, A.; Fernie, A. R.; Wahl, V.; Caldana, C.: The Regulatory-associated protein of target of rapamycin 1B (RAPTOR 1B) interconnects with the photoperiod pathway to promote flowering in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 122 (6), e2405536122 (2025)

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64.

Journal Article

Vicente, R.; Fernie, A. R.; Uberegui, E.: High-throughput screening of wheat leaf dark respiration identifies significant genetic control. Journal of Experimental Botany 76 (4), pp. 904 - 908 (2025)

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65.

Journal Article

Yin, H.; Liu, W.; Hu, X.; Jia, J.; Liu, M.; Wei, J.; Cheng, Y.; Gong, X.; Li, Q.; Yan, W. et al.; Jia, J.; Gao, L.; Fernie, A. R.; Chen, W.: A wheat phytohormone atlas spanning major tissues across the entire life cycle provides novel insights into cytokinin and jasmonic acid interplay. Molecular Plant 18 (2), pp. 366 - 382 (2025)

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66.

Journal Article

Yoshida, T.; Fernie, A. R.: The protein phosphatases of abscisic acid coreceptors mediate carbon metabolism in Arabidopsis. Theoretical and Experimental Plant Physiology 37, 15 (2025)

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67.

Journal Article

Zhang, J.; Alseekh, S.; Fernie, A. R.; Qian, D.; Huang, L.: Chemical Characterization of Lipids Provides New Insights into Goji Berry Metabolism. ACS Food Science & Technology 5 (2), pp. 761 - 769 (2025)

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68.

Journal Article

Alseekh, S.; Klemmer, A.; Yan, J.; Guo, T.; Fernie, A. R.: Embracing plant plasticity or robustness as a means of ensuring food security. Nature Communications 16 (1), 461 (2025)

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69.

Journal Article

Barros, J.A.S.; Nunes-Nesi, A.; Fernie, A. R.; Araújo, W.L.: Transcriptional crosstalk linking color, acidity, and aroma in peach. Trends in Plant Science (2025)

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70.

Journal Article

Casatejada-Anchel, R.; Torres-Moncho, A.; Anoman, A. D.; Budhagatapalli, N.; Pérez-Lorences, E.; Alcántara-Enguídanos, A.; Rosa-Téllez, S.; de Souza, L. P.; Kumlehn, J.; Fernie, A. R. et al.; Muñoz-Bertomeu, J.; Ros, R.: Metabolic engineering of the serine/glycine network as a means to improve the nitrogen content of crops. Plant Biotechnology Journal 23 (1), pp. 268 - 280 (2025)

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71.

Journal Article

Gramma, V.; Olas, J. J.; Zacharaki, V.; Ponnu, J.; Musialak-Lange, M.; Wahl, V.: Carbon and nitrogen signaling regulate FLOWERING LOCUS C and impact flowering time in Arabidopsis. Plant Physiology 197 (1), kiae594 (2025)

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72.

Journal Article

Kappel, S.; Frieboes, M. J.; Yokoyama, R.; Kappel, C.; Tóth, S. Z.; Fernie, A. R.; Jahns, P.; Smirnoff, N.; Aarabi, F.; Armbruster, U.: Developmental and environmental effects on VTC2-dependent leaf ascorbate accumulation and functions. Journal of Experimental Botany, eraf035 (2025)

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73.

Journal Article

Lindner, S. N.; Ralser, M.: The ability of pentose pathways to form all essential metabolites provides clues to the origins of metabolism. PLOS Biology 23 (1), e3002996 (2025)

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74.

Journal Article

Liu, M.-Y.; Jiao, Z.; Lou, H.; Tang, D.; Tian, X.; Zhou, B.-W.; Ruan, J.; Fernie, A. R.; Zhang, Q.: A glutamine synthetase-DOF transcription factor module regulates N remobilization from source to sink tissues in tea plants. Plant Physiology 197 (1), kiae644 (2025)

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75.

Journal Article

López, C.; Alseekh, S.; Rivas, F.; Fernie, A. R.; Prieto, P.; Alamillo, J.: CRISPR/Cas9 editing of two adenine phosphoribosyl transferase coding genes reveals the functional specialization of adenine salvage proteins in common bean. Journal of Experimental Botany 76 (2), pp. 346 - 362 (2025)

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76.

Journal Article

López-Tubau, J.; Laibach, N.; Burciaga-Monge, A.; Alseekh, S.; Deng, C.; Fernie, A. R.; Altabella, T.; Ferrer, A.: Differential impact of impaired steryl ester biosynthesis on the metabolome of tomato fruits and seeds. Physiologia Plantarum 177 (1), e70022 (2025)

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77.

Journal Article

Mohr, M.; Satanowski, A.; Lindner, S.; Erb, T.; Andexer, J.: Rewiring Escherichia coli to transform formate into methyl groups. Microbial Cell Factories 24 (1), 55 (2025)

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78.

Journal Article

Nascimento, C.P.; da Fonseca-Pereira, P.; Ferreira-Silva, M.; Rosado-Souza, L.; Linka, N.; Fernie, A. R.; Araújo, W.L.; Nunes-Nesi, A.: Functional analysis of the extraplastidial TRX system in germination and early stages of development of Arabidopsis thaliana. Plant Science 350, 112310 (2025)

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79.

Journal Article

Singh, A.; Rajendran, R.; Schöttler, M. A.; Li, X.; Liu, Q.; Muntaha, S. N.; Fettke, J.: The plastidial glucan phosphorylase modulates maltodextrin metabolism and affects starch parameters in Arabidopsis thaliana. Journal of Experimental Botany, eraf041 (2025)

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80.

Journal Article

Tiozon, R. J. N.; Pasion-Uy, E.; Alseekh, S.; Sartagoda, K. J. D.; Gempesaw, S.; Tolentino, J. H. G.; Fernie, A. R.; Sreenivasulu, N.: Lipidomics-based association study reveals genomic signatures of anti-cancer qualities of pigmented rice sprouts. Frontiers in Plant Science 16, 1533442 (2025)

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81.

Journal Article

Wendering, P.; Andreou, G.M.; Laitinen, R.A.E.; Nikoloski, Z.: Metabolic modeling identifies determinants of thermal growth responses in Arabidopsis thaliana. New Phytologist (2025)

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82.

Journal Article

Wu, S.; Zhang, S.; Liu, C.-M.; Fernie, A. R.; Yan, S.: Recent Advances in Mass Spectrometry-based Protein Interactome Studies. Molecular & Cellular Proteomics 24 (1), 100887 (2025)

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83.

Journal Article

Wu, X.-X.; Li, F.; Zhu, C.; Sun, S.-Y.; Mu, W.-H.; Ruf, S.; Bock, R.; Zhang, Y.; Zhou, F.: Protocol for the purification of the plastid-encoded RNA polymerase from transplastomic tobacco plants. STAR Protocols 6 (1), 103528 (2025)

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84.

Journal Article

Yokoyama, R.; Maeda, H.: Arabidopsis 3-Deoxy-d-Arabino-Heptulosonate 7-Phosphate (DAHP) Synthases of the Shikimate Pathway Display Both Manganese- and Cobalt-Dependent Activities. Plant Direct 9 (1), e70037 (2025)

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85.

Journal Article

Yu, Y.; Li, W.; Liu, Y.; Liu, Y.; Zhang, Q.; Ouyang, Y.; Ding, W.; Xue, Y.; Zou, Y.; Yan, J. et al.; Jia, A.; Yan, J.; Hao, X.; Gou, Y.; Zhai, Z.; Liu, L.; Zheng, Y.; Zhang, B.; Xu, J.; Yang, N.; Xiao, Y.; Zhuo, L.; Lai, Z.; Yin, P.; Liu, H.-J.; Fernie, A. R.; Jackson, D.; Yan, J.: A Zea genus-specific micropeptide controls kernel dehydration in maize. Cell 188, pp. 44 - 59 (2025)

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86.

Journal Article

D'Auria, J.C.; Fernie, A. R.: The BAHD and the bold: the mitochondria's role in alkaloid artistry. Trends in Plant Science 29 (12), pp. 1290 - 1291 (2024)

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87.

Journal Article

Domer, A.; Jasinska, W.; Rosental, L.; Shochat, E.; Alseekh, S.; Fernie, A. R.; Brotman, Y.; Ovadia, O.: Comparative analysis of the plasma metabolome of migrating passerines: novel insights into stopover metabolism. Journal of Avian Biology 2025 (2), e03331 (2024)

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88.

Journal Article

Fontanet-Manzaneque, J. B.; Laibach, N.; Herrero-García, I.; Coleto-Alcudia, V.; Blasco-Escámez, D.; Zhang, C.; Orduña, L.; Alseekh, S.; Miller, S.; Bjarnholt, N. et al.; Fernie, A. R.; Matus, J. T.; Caño-Delgado, A. I.: Untargeted mutagenesis of brassinosteroid receptor SbBRI1 confers drought tolerance by altering phenylpropanoid metabolism in Sorghum bicolor. Plant Biotechnology Journal 22 (12), pp. 3406 - 3423 (2024)

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89.

Journal Article

Guillory, A.; Fournier, J.; Kelner, A.; Hobecker, K.; Auriac, M.-C.; Frances, L.; Delers, A.; Pedinotti, L.; Le Ru, A.; Keller, J. et al.; Delaux, P.-M.; Gutjahr, C.; Frei Dit Frey, N.; de Carvalho-Niebel, F.: Annexin- and calcium-regulated priming of legume root cells for endosymbiotic infection. Nature Communications 15 (1), 10639 (2024)

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90.

Journal Article

He, J.; Hao, Y.; He, Y.; Li, W.; Shi, Y.; Khurshid, M.; Lai, D.; Ma, C.; Wang, X.; Li, J. et al.; Cheng, J.; Fernie, A. R.; Ruan, J.; Zhang, K.; Zhou, M.: Genome-wide associated study identifies FtPMEI13 gene conferring drought resistance in Tartary buckwheat. The Plant Journal 120 (6), pp. 2398 - 2419 (2024)

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91.

Journal Article

Jasinska, W.; Dindo, M.; Correa Cordoba, S. M.; Serohijos, A.W.R.; Laurino, P.; Brotman, Y.; Bershtein, S.: Non-consecutive enzyme interactions within TCA cycle supramolecular assembly regulate carbon-nitrogen metabolism. Nature Communications 15 (1), 5285 (2024)

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92.

Journal Article

Kanojia, A.; Lyall, R.; Sujeeth, N.; Alseekh, S.; Martinez Rivas, F.J.; Fernie, A. R.; Gechev, T.S.; Petrov, V.: Physiological and molecular insights into the effect of a seaweed biostimulant on enhancing fruit yield and drought tolerance in tomato. Plant Stress 14, 100692 (2024)

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93.

Journal Article

Lehr, P.P.; Erban, A.; Hartwig, R.P.; Wimmer, M.A.; Kopka, J.; Zörb, C.: Grapevine and maize: Two guard cell shaped strategies to cope with repeated drought stress. Plant Physiology and Biochemistry 217, 109262 (2024)

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94.

Journal Article

Li, B.; Armarego-Marriott, T.; Kowalewska, Ł.; Thiele, W.; Erban, A.; Ruf, S.; Kopka, J.; Schöttler, M. A.; Bock, R.: Membrane protein provision controls prothylakoid biogenesis in tobacco etioplasts. The Plant Cell 36 (12), pp. 4862 - 4880 (2024)

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95.

Journal Article

Luo, J.; He, C.; Yan, S.; Jiang, C.; Chen, A.; Li, K.; Zhu, Y.; Gui, S.; Yang, N.; Xiao, Y. et al.; Wu, S.; Zhang, F.; Liu, T.; Wang, J.; Huang, W.; Yang, Y.; Wang, H.; Yang, W.; Li, W.; Zhuo, L.; Fernie, A. R.; Zhan, J.; Wang, L.; Yan, J.: A metabolic roadmap of waxy corn flavor. Molecular Plant 17 (12), pp. 1883 - 1898 (2024)

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96.

Journal Article

Mazzarella, T.; Chialva, M.; de Souza, L. P.; Wang, J.Y.; Votta, C.; Tiozon, R.; Vaccino, P.; Salvioli di Fossalunga, A.; Sreenivasulu, N.; Asami, T. et al.; Fernie, A. R.; Al-Babili, S.; Lanfranco, L.; Fiorilli, V.: Effect of exogenous treatment with zaxinone and its mimics on rice root microbiota across different growth stages. Scientific Reports 14, 31374 (2024)

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97.

Journal Article

Orsi, E.; Schada von Borzyskowski, L.; Noack, S.; Nikel, P.I.; Lindner, S. N.: Automated in vivo enzyme engineering accelerates biocatalyst optimization. Nature Communications 15, 3447 (2024)

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98.

Journal Article

Pankaj, R.; Shoejaeyfar, S.; Figueiredo, D.D.: An epiQTL underlying asexual seed formation in Arabidopsis. Plant Reproduction 37, pp. 463 - 468 (2024)

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99.

Journal Article

Piotrowska, J.; Wawrzyńska, A.; Olszak, M.; Krzyszton, M.; Apodiakou, A.; Alseekh, S.; Ramos, J. M. L.; Hoefgen, R.; Kopriva, S.; Sirko, A.: Analysis of the quadruple lsu mutant reveals molecular determinants of the role of LSU proteins in sulfur assimilation in Arabidopsis. The Plant Journal 120 (6), pp. 2919 - 2936 (2024)

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100.

Journal Article

Tiozon, R. J. N.; Alseekh, S.; Fernie, A. R.; Bonto, A. P.; Yu, J.; Buenafe, R. J. Q.; Sreenivasulu, N.: Comprehensive lipidomic insights of differentially accumulating lipids in large pigmented rice sprout collection and the changes in the starch composition upon germination. Food Chemistry 460 (Part 2), 140677 (2024)

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