All Publications

51.

Journal Article

Yoshida, T.; Fernie, A. R.: The protein phosphatases of abscisic acid coreceptors mediate carbon metabolism in Arabidopsis. Theoretical and Experimental Plant Physiology 37, 15 (2025)

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52.

Journal Article

Zhang, J.; Alseekh, S.; Fernie, A. R.; Qian, D.; Huang, L.: Chemical Characterization of Lipids Provides New Insights into Goji Berry Metabolism. ACS Food Science & Technology 5 (2), pp. 761 - 769 (2025)

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53.

Journal Article

Alseekh, S.; Klemmer, A.; Yan, J.; Guo, T.; Fernie, A. R.: Embracing plant plasticity or robustness as a means of ensuring food security. Nature Communications 16 (1), 461 (2025)

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54.

Journal Article

Casatejada-Anchel, R.; Torres-Moncho, A.; Anoman, A. D.; Budhagatapalli, N.; Pérez-Lorences, E.; Alcántara-Enguídanos, A.; Rosa-Téllez, S.; de Souza, L. P.; Kumlehn, J.; Fernie, A. R. et al.; Muñoz-Bertomeu, J.; Ros, R.: Metabolic engineering of the serine/glycine network as a means to improve the nitrogen content of crops. Plant Biotechnology Journal 23 (1), pp. 268 - 280 (2025)

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55.

Journal Article

Gramma, V.; Olas, J. J.; Zacharaki, V.; Ponnu, J.; Musialak-Lange, M.; Wahl, V.: Carbon and nitrogen signaling regulate FLOWERING LOCUS C and impact flowering time in Arabidopsis. Plant Physiology 197 (1), kiae594 (2025)

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56.

Journal Article

Kappel, S.; Frieboes, M. J.; Yokoyama, R.; Kappel, C.; Tóth, S. Z.; Fernie, A. R.; Jahns, P.; Smirnoff, N.; Aarabi, F.; Armbruster, U.: Developmental and environmental effects on VTC2-dependent leaf ascorbate accumulation and functions. Journal of Experimental Botany, eraf035 (2025)

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57.

Journal Article

Lindner, S. N.; Ralser, M.: The ability of pentose pathways to form all essential metabolites provides clues to the origins of metabolism. PLOS Biology 23 (1), e3002996 (2025)

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58.

Journal Article

Liu, M.-Y.; Jiao, Z.; Lou, H.; Tang, D.; Tian, X.; Zhou, B.-W.; Ruan, J.; Fernie, A. R.; Zhang, Q.: A glutamine synthetase-DOF transcription factor module regulates N remobilization from source to sink tissues in tea plants. Plant Physiology 197 (1), kiae644 (2025)

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59.

Journal Article

López, C.; Alseekh, S.; Rivas, F.; Fernie, A. R.; Prieto, P.; Alamillo, J.: CRISPR/Cas9 editing of two adenine phosphoribosyl transferase coding genes reveals the functional specialization of adenine salvage proteins in common bean. Journal of Experimental Botany 76 (2), pp. 346 - 362 (2025)

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60.

Journal Article

López-Tubau, J.; Laibach, N.; Burciaga-Monge, A.; Alseekh, S.; Deng, C.; Fernie, A. R.; Altabella, T.; Ferrer, A.: Differential impact of impaired steryl ester biosynthesis on the metabolome of tomato fruits and seeds. Physiologia Plantarum 177 (1), e70022 (2025)

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61.

Journal Article

Mohr, M.; Satanowski, A.; Lindner, S.; Erb, T.; Andexer, J.: Rewiring Escherichia coli to transform formate into methyl groups. Microbial Cell Factories 24 (1), 55 (2025)

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62.

Journal Article

Nascimento, C.P.; da Fonseca-Pereira, P.; Ferreira-Silva, M.; Rosado-Souza, L.; Linka, N.; Fernie, A. R.; Araújo, W.L.; Nunes-Nesi, A.: Functional analysis of the extraplastidial TRX system in germination and early stages of development of Arabidopsis thaliana. Plant Science 350, 112310 (2025)

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63.

Journal Article

Singh, A.; Rajendran, R.; Schöttler, M. A.; Li, X.; Liu, Q.; Muntaha, S. N.; Fettke, J.: The plastidial glucan phosphorylase modulates maltodextrin metabolism and affects starch parameters in Arabidopsis thaliana. Journal of Experimental Botany, eraf041 (2025)

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64.

Journal Article

Tiozon, R. J. N.; Pasion-Uy, E.; Alseekh, S.; Sartagoda, K. J. D.; Gempesaw, S.; Tolentino, J. H. G.; Fernie, A. R.; Sreenivasulu, N.: Lipidomics-based association study reveals genomic signatures of anti-cancer qualities of pigmented rice sprouts. Frontiers in Plant Science 16, 1533442 (2025)

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65.

Journal Article

Wendering, P.; Andreou, G.M.; Laitinen, R.A.E.; Nikoloski, Z.: Metabolic modeling identifies determinants of thermal growth responses in Arabidopsis thaliana. New Phytologist (2025)

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66.

Journal Article

Wu, S.; Zhang, S.; Liu, C.-M.; Fernie, A. R.; Yan, S.: Recent Advances in Mass Spectrometry-based Protein Interactome Studies. Molecular & Cellular Proteomics 24 (1), 100887 (2025)

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67.

Journal Article

Wu, X.-X.; Li, F.; Zhu, C.; Sun, S.-Y.; Mu, W.-H.; Ruf, S.; Bock, R.; Zhang, Y.; Zhou, F.: Protocol for the purification of the plastid-encoded RNA polymerase from transplastomic tobacco plants. STAR Protocols 6 (1), 103528 (2025)

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68.

Journal Article

Yokoyama, R.; Maeda, H.: Arabidopsis 3-Deoxy-d-Arabino-Heptulosonate 7-Phosphate (DAHP) Synthases of the Shikimate Pathway Display Both Manganese- and Cobalt-Dependent Activities. Plant Direct 9 (1), e70037 (2025)

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69.

Journal Article

Yu, Y.; Li, W.; Liu, Y.; Liu, Y.; Zhang, Q.; Ouyang, Y.; Ding, W.; Xue, Y.; Zou, Y.; Yan, J. et al.; Jia, A.; Yan, J.; Hao, X.; Gou, Y.; Zhai, Z.; Liu, L.; Zheng, Y.; Zhang, B.; Xu, J.; Yang, N.; Xiao, Y.; Zhuo, L.; Lai, Z.; Yin, P.; Liu, H.-J.; Fernie, A. R.; Jackson, D.; Yan, J.: A Zea genus-specific micropeptide controls kernel dehydration in maize. Cell 188, pp. 44 - 59 (2025)

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70.

Journal Article

Asao, S.; Way, D. A.; Turnbull, M. H.; Stitt, M.; McDowell, N. G.; Reich, P. B.; Bloomfield, K. J.; Zaragoza-Castells, J.; Creek, D.; O'Sullivan, O. et al.; Crous, K. Y.; Egerton, J. J.G.; Mirotchnick, N.; Weerasinghe, L. K.; Griffin, K. L.; Hurry, V.; Meir, P.; Sitch, S.; Atkin, O. K.: Leaf nonstructural carbohydrate residence time, not concentration, correlates with leaf functional traits following the leaf economic spectrum in woody plants. New Phytologist (2024)

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71.

Journal Article

D'Auria, J.C.; Fernie, A. R.: The BAHD and the bold: the mitochondria's role in alkaloid artistry. Trends in Plant Science 29 (12), pp. 1290 - 1291 (2024)

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72.

Journal Article

Domer, A.; Jasinska, W.; Rosental, L.; Shochat, E.; Alseekh, S.; Fernie, A. R.; Brotman, Y.; Ovadia, O.: Comparative analysis of the plasma metabolome of migrating passerines: novel insights into stopover metabolism. Journal of Avian Biology 2025 (2), e03331 (2024)

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73.

Journal Article

Fontanet-Manzaneque, J. B.; Laibach, N.; Herrero-García, I.; Coleto-Alcudia, V.; Blasco-Escámez, D.; Zhang, C.; Orduña, L.; Alseekh, S.; Miller, S.; Bjarnholt, N. et al.; Fernie, A. R.; Matus, J. T.; Caño-Delgado, A. I.: Untargeted mutagenesis of brassinosteroid receptor SbBRI1 confers drought tolerance by altering phenylpropanoid metabolism in Sorghum bicolor. Plant Biotechnology Journal 22 (12), pp. 3406 - 3423 (2024)

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74.

Journal Article

Guillory, A.; Fournier, J.; Kelner, A.; Hobecker, K.; Auriac, M.-C.; Frances, L.; Delers, A.; Pedinotti, L.; Le Ru, A.; Keller, J. et al.; Delaux, P.-M.; Gutjahr, C.; Frei Dit Frey, N.; de Carvalho-Niebel, F.: Annexin- and calcium-regulated priming of legume root cells for endosymbiotic infection. Nature Communications 15 (1), 10639 (2024)

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75.

Journal Article

He, J.; Hao, Y.; He, Y.; Li, W.; Shi, Y.; Khurshid, M.; Lai, D.; Ma, C.; Wang, X.; Li, J. et al.; Cheng, J.; Fernie, A. R.; Ruan, J.; Zhang, K.; Zhou, M.: Genome-wide associated study identifies FtPMEI13 gene conferring drought resistance in Tartary buckwheat. The Plant Journal 120 (6), pp. 2398 - 2419 (2024)

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76.

Journal Article

Jasinska, W.; Dindo, M.; Correa Cordoba, S. M.; Serohijos, A.W.R.; Laurino, P.; Brotman, Y.; Bershtein, S.: Non-consecutive enzyme interactions within TCA cycle supramolecular assembly regulate carbon-nitrogen metabolism. Nature Communications 15 (1), 5285 (2024)

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77.

Journal Article

Kanojia, A.; Lyall, R.; Sujeeth, N.; Alseekh, S.; Martinez Rivas, F.J.; Fernie, A. R.; Gechev, T.S.; Petrov, V.: Physiological and molecular insights into the effect of a seaweed biostimulant on enhancing fruit yield and drought tolerance in tomato. Plant Stress 14, 100692 (2024)

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78.

Journal Article

Lehr, P.P.; Erban, A.; Hartwig, R.P.; Wimmer, M.A.; Kopka, J.; Zörb, C.: Grapevine and maize: Two guard cell shaped strategies to cope with repeated drought stress. Plant Physiology and Biochemistry 217, 109262 (2024)

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79.

Journal Article

Li, B.; Armarego-Marriott, T.; Kowalewska, Ł.; Thiele, W.; Erban, A.; Ruf, S.; Kopka, J.; Schöttler, M. A.; Bock, R.: Membrane protein provision controls prothylakoid biogenesis in tobacco etioplasts. The Plant Cell 36 (12), pp. 4862 - 4880 (2024)

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80.

Journal Article

Luo, J.; He, C.; Yan, S.; Jiang, C.; Chen, A.; Li, K.; Zhu, Y.; Gui, S.; Yang, N.; Xiao, Y. et al.; Wu, S.; Zhang, F.; Liu, T.; Wang, J.; Huang, W.; Yang, Y.; Wang, H.; Yang, W.; Li, W.; Zhuo, L.; Fernie, A. R.; Zhan, J.; Wang, L.; Yan, J.: A metabolic roadmap of waxy corn flavor. Molecular Plant 17 (12), pp. 1883 - 1898 (2024)

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81.

Journal Article

Mazzarella, T.; Chialva, M.; de Souza, L. P.; Wang, J.Y.; Votta, C.; Tiozon, R.; Vaccino, P.; Salvioli di Fossalunga, A.; Sreenivasulu, N.; Asami, T. et al.; Fernie, A. R.; Al-Babili, S.; Lanfranco, L.; Fiorilli, V.: Effect of exogenous treatment with zaxinone and its mimics on rice root microbiota across different growth stages. Scientific Reports 14, 31374 (2024)

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82.

Journal Article

Orsi, E.; Schada von Borzyskowski, L.; Noack, S.; Nikel, P.I.; Lindner, S. N.: Automated in vivo enzyme engineering accelerates biocatalyst optimization. Nature Communications 15, 3447 (2024)

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83.

Journal Article

Pankaj, R.; Shoejaeyfar, S.; Figueiredo, D.D.: An epiQTL underlying asexual seed formation in Arabidopsis. Plant Reproduction 37, pp. 463 - 468 (2024)

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84.

Journal Article

Piotrowska, J.; Wawrzyńska, A.; Olszak, M.; Krzyszton, M.; Apodiakou, A.; Alseekh, S.; Ramos, J. M. L.; Hoefgen, R.; Kopriva, S.; Sirko, A.: Analysis of the quadruple lsu mutant reveals molecular determinants of the role of LSU proteins in sulfur assimilation in Arabidopsis. The Plant Journal 120 (6), pp. 2919 - 2936 (2024)

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85.

Journal Article

Tiozon, R. J. N.; Alseekh, S.; Fernie, A. R.; Bonto, A. P.; Yu, J.; Buenafe, R. J. Q.; Sreenivasulu, N.: Comprehensive lipidomic insights of differentially accumulating lipids in large pigmented rice sprout collection and the changes in the starch composition upon germination. Food Chemistry 460 (Part 2), 140677 (2024)

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86.

Journal Article

Weiller, F.; Diniz, I.; Pimentel, D.; Erban, A.; Reis, P.; Soares, F.; Rego, C.; Kopka, J.; Fortes, A.M.: Metabolomic analysis of grapes and leaves from symptomatic and asymptomatic Vitis vinifera grapevines with Esca disease. Current Opinion in Plant Biology 40, 100378 (2024)

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87.

Journal Article

Wijesingha Ahchige, M.; Fisher, J.; Sokolowska, E.; Lyall, R.; Illing, N.; Skirycz, A.; Zamir, D.; Alseekh, S.; Fernie, A. R.: The variegated canalized-1 tomato mutant is linked to photosystem assembly. Computational and Structural Biotechnology Journal 23, pp. 3967 - 3988 (2024)

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88.

Journal Article

Yokoyama, R.: Spatial sugar separation is key to how fast you get old. Plant Physiology 196 (4), pp. 2269 - 2270 (2024)

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89.

Journal Article

Bortolami, G.; de Werk, T.; Larter, M.; Thonglim, A.; Mueller-Roeber, B.; Balazadeh, S.; Lens, F.: Integrating gene expression analysis and ecophysiological responses to water deficit in leaves of tomato plants. Scientific Reports 14, 29024 (2024)

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90.

Journal Article

Dziasek, K.; Santos-González, J.; Wang, K.; Qiu, Y.; Zhu, J.; Rigola, D.; Nijbroek, K.; Köhler, C.: Dosage-sensitive maternal siRNAs determine hybridization success in Capsella. Nature Plants 10, pp. 1969 - 1983 (2024)

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91.

Journal Article

Farag, M.; Baky, M.; Kuehnhold, H.; Kriege, E.; Kunzmann, A.; Alseekh, S.; Al-Hammady, M.; Ezz, S.; Fernie, A. R.; Westphal, H. et al.; Stuhr, M.: Effects of thermal and UV stress on the polar and non-polar metabolome of photosymbiotic jellyfish and sea anemones. Marine Pollution Bulletin 208, 116983 (2024)

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92.

Journal Article

Fichtner, F.; Humphreys, J.L.; Barbier, F.F.; Feil, R.; Westhoff, P.; Moseler, A.; Lunn, J.E.; Smith, S.M.; Beveridge, C.A.: Strigolactone signalling inhibits trehalose 6-phosphate signalling independently of BRC1 to suppress shoot branching. New Phytologist 244 (3), pp. 900 - 913 (2024)

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93.

Journal Article

Huang, X.; He, Y.; Zhang, K.; Shi, Y.; Zhao, H.; Lai, D.; Lin, H.; Wang, X.; Yang, Z.; Xiao, Y. et al.; Li, W.; Ouyang, Y.; Woo, S.H.; Quinet, M.; Georgiev, M.I.; Fernie, A. R.; Liu, X.; Zhou, M.: Evolution and Domestication of a Novel Biosynthetic Gene Cluster Contributing to the Flavonoid Metabolism and High-Altitude Adaptability of Plants in the Fagopyrum Genus. Advanced Science 11 (43), 2403603 (2024)

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94.

Journal Article

Kazakov, P.; Alseekh, S.; Ivanova, V.; Gechev, T.: Biostimulant-Based Molecular Priming Improves Crop Quality and Enhances Yield of Raspberry and Strawberry Fruits. Metabolites 14 (11), 594 (2024)

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95.

Journal Article

Lázaro-Gimeno, D.; Ferrari, C.; Delhomme, N.; Johansson, M.; Sjölander, J.; Singh, R. K.; Mutwil, M.; Eriksson, M. E.: The circadian clock participates in seasonal growth in Norway spruce (Picea abies). Tree Physiology 44 (11), tpae139 (2024)

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96.

Journal Article

Liu, F.; Fernie, A. R.; Zhang, Y.: Can a nitrogen-fixing organelle be engineered within plants? Trends in Plant Science 29 (11), pp. 1168 - 1171 (2024)

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97.

Journal Article

Peng, H.: In the Spotlight: Journey from a Single Cell to a Flourishing Forest. Physiologia Plantarum 176 (6), e14609 (2024)

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98.

Journal Article

Razaghi-Moghadam, Z.; Soleymani Babadi, F.; Nikoloski, Z.: Harnessing the optimization of enzyme catalytic rates in engineering of metabolic phenotypes. PLOS Computational Biology 20 (11), e1012576 (2024)

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99.

Journal Article

Schulz-Mirbach, H.; Wichmann, P.; Satanowski, A.; Meusel, H.; Wu, T.; Nattermann, M.; Burgener, S.; Paczia, N.; Bar-Even, A.; Erb, T. J.: New-to-nature CO2-dependent acetyl-CoA assimilation enabled by an engineered B12-dependent acyl-CoA mutase. Nature Communications 15, 10235 (2024)

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100.

Journal Article

Wang, Y.; Strauss, S.; Smith, R. S.; Sampathkumar, A.: Actin-mediated avoidance of tricellular junction influences global topology at the Arabidopsis shoot apical meristem. Cell Reports 43 (11), 114844 (2024)

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Journal Article (4246)