All Publications

51.

Journal Article

Nowak, J.; Eng, R.C.; Matz, T.; Waack, M.; Persson, S.; Sampathkumar, A.; Nikoloski, Z.: A network-based framework for shape analysis enables accurate characterization of leaf epidermal cells. Nature Communications 12 (1), 458 (2021)

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52.

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Schulz, P.; Piepenburg, K.; Lintermann, R.; Herde, M.; Schöttler, M. A.; Schmidt, L. K.; Ruf, S.; Kudla, J.; Romeis, T.; Bock, R.: Improving plant drought tolerance and growth under water limitation through combinatorial engineering of signaling networks. Plant Biotechnology Journal 19 (1), pp. 74 - 86 (2021)

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53.

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Hertle, A. P.; Haberl, B.; Bock, R.: Horizontal genome transfer by cell-to-cell travel of whole organelles. Science Advances 7 (1), eabd8215 (2021)

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54.

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Agudo-Canalejo, J.; Schultz, S. W.; Chino, H.; Migliano, S. M.; Saito, C.; Koyama-Honda, I.; Stenmark, H.; Brech, A.; May, A. I.; Mizushima, N. et al.; Knorr, R. L.: Wetting regulates autophagy of phase-separated compartments and the cytosol. Nature 591, pp. 142 - 146 (2021)

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55.

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Alseekh, S.; Kostova, D.; Bulut, M.; Fernie, A. R.: Genome-wide association studies: assessing trait characteristics in model and crop plants. Cellular and Molecular Life Sciences 78 (15), pp. 5743 - 5754 (2021)

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56.

Journal Article

Ancín, M.; Larraya, L.; Florez-Sarasa, I. D.; Bénard, C.; Fernández-San Millán, A.; Veramendi, J.; Gibon, Y.; Fernie, A. R.; Aranjuelo, I.; Farran, I.: Overexpression of thioredoxin m in chloroplasts alters carbon and nitrogen partitioning in tobacco. Journal of Experimental Botany 72 (13), pp. 4949 - 4964 (2021)

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57.

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Aneklaphakij, C.; Saigo, T.; Watanabe, M.; Naake, T.; Fernie, A. R.; Bunsupa, S.; Satitpatipan, V.; Tohge, T.: Diversity of Chemical Structures and Biosynthesis of Polyphenols in Nut-Bearing Species. Frontiers in Plant Science 12, 642581 (2021)

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58.

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Avidan, O.; Malitsky, S.; Pick, U.: Fatty Acid Production and Direct Acyl Transfer through Polar Lipids Control TAG Biosynthesis during Nitrogen Deprivation in the Halotolerant Alga Dunaliella tertiolecta. Marine Drugs 19 (7), 368 (2021)

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59.

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Bachmann, J. A.; Tedder, A.; Fracassetti, M.; Steige, K. A.; Lafon-Placette, C.; Köhler, C.; Slotte, T.: On the origin of the widespread self-compatible allotetraploid Capsella bursa-pastoris (Brassicaceae). Heredity 127 (1), pp. 124 - 134 (2021)

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60.

Journal Article

Back, G.; Walther, D.: Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana. BMC Genomics 22 (1), 390 (2021)

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61.

Journal Article

Barja, M.V.; Ezquerro, M.; Beretta, S.; Diretto, G.; Florez-Sarasa, I.; Feixes, E.; Fiore, A.; Karlova, R.; Fernie, A. R.; Beekwilder, J. et al.; Rodríguez-Concepción, M.: Several geranylgeranyl diphosphate synthase isoforms supply metabolic substrates for carotenoid biosynthesis in tomato. New Phytologist 231 (1), pp. 255 - 272 (2021)

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62.

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Beleggia, R.; Omranian, N.; Holtz, Y.; Gioia, T.; Fiorani, F.; Nigro, F.M.; Pecchioni, N.; De Vita, P.; Schurr, U.; David, J.L. et al.; Nikoloski, Z.; Papa, R.: Comparative analysis based on transcriptomics and metabolomics data reveal differences between emmer and durum wheat in response to nitrogen starvation. International Journal of Molecular Sciences 22 (9), 4790 (2021)

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63.

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Bottcher, A.; Domingues Júnior, A.P.; de Souza, L. P.; Tohge, T.; Araujo, W. L.; Fernie, A. R.; Mazzafera, P.: Sugarcane cell suspension reveals major metabolic changes under different nitrogen starvation regimes. BRAGANTIA 80, e2921 (2021)

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64.

Journal Article

Breitel, D.; Brett, P.; Alseekh, S.; Fernie, A. R.; Butelli, E.; Martin, C.: Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA. Data in Brief 34, 106678 (2021)

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65.

Journal Article

Brotman, Y.; Llorente-Wiegand, C.; Oyong, G.; Badoni, S.; Misra, G.; Anacleto, R.; Parween, S.; Pasion, E.; Tiozon Jr., R. N.; Anonuevo, J. J. et al.; Krishna deGuzman, M.; Alseekh, S.; Mbanjo, E. G.N.; Boyd, L. A.; Fernie, A. R.; Sreenivasulu, N.: The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition. The Plant Journal 106 (2), pp. 507 - 527 (2021)

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66.

Journal Article

Bulut, M.; Fernie, A. R.; Alseekh, S.: Large-scale Multi-omics Genome-wide Association Studies (Mo-GWAS): Guidelines for Sample Preparation and Normalization. Journal of Visualized Experiments 173, e62732 (2021)

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67.

Journal Article

Busso-Lopes, A. F.; Carnielli, C. M.; Winck, F. V.; de Sa Patroni, F. M.; Oliveira, A. K.; Granato, D. C.; Pereira E Costa, R. A.; Domingues, R. R.; Pauletti, B. A.; Riano-Pachon, D. M. et al.; Aricetti, J.; Caldana, C.; Graner, E.; Della Coletta, R.; Dryden, K.; Fox, J. W.; Paes Leme, A. F.: A Reductionist Approach Using Primary and Metastatic Cell-Derived Extracellular Vesicles Reveals Hub Proteins Associated with Oral Cancer Prognosis. Molecular and Cellular Proteomics 20, 100118 (2021)

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68.

Journal Article

Cárcamo-Fincheira, P.; Reyes-Díaz, M.; Omena-García, R.P.; Vargas, J.R.; Alvear, M.; Florez-Sarasa, I.; Rosado-Souza, L.; Rengel, Z.; Fernie, A. R.; Nunes-Nesi, A. et al.; Inostroza-Blancheteau, C.: Metabolomic analyses of highbush blueberry (Vaccinium corymbosum L.) cultivars revealed mechanisms of resistance to aluminum toxicity. Environmental and Experimental Botany 183, 104338 (2021)

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69.

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Caroca, R.; Howell, K. A.; Malinova, I.; Burgos, A.; Tiller, N.; Pellizzer, T.; Annunziata, M. G.; Hasse, C.; Ruf, S.; Karcher, D. et al.; Bock, R.: Knock-down of the plastid-encoded acetyl-CoA carboxylase gene uncovers functions in metabolism and development. Plant Physiology 185 (3), pp. 1091 - 1110 (2021)

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70.

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Casatejada-Anchel, R.; Munoz-Bertomeu, J.; Rosa-Tellez, S.; Anoman, A. D.; Nebauer, S. G.; Torres-Moncho, A.; Fernie, A. R.; Ros, R.: Phosphoglycerate dehydrogenase genes differentially affect Arabidopsis metabolism and development. Plant Science 306, 110863 (2021)

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71.

Journal Article

Cervela-Cardona, L.; Yoshida, T.; Zhang, Y.; Okada, M.; Fernie, A. R.; Mas, P.: Circadian Control of Metabolism by the Clock Component TOC1. Frontiers in Plant Science 12, 683516 (2021)

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72.

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Chen, J.; Xue, M.; Liu, H.; Fernie, A. R.; Chen, W.: Exploring the genic resources underlying metabolites through mGWAS and mQTL in wheat: From large-scale gene identification and pathway elucidation to crop improvement. Plant Communications 2 (4), 100216 (2021)

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73.

Journal Article

Cheong, B.E.; Beine-Golovchuk, O.; Gorka, M.; Ho, W.W.H.; Martinez-Seidel, F.; Firmino, A.; Skirycz, A.; Roessner, U.; Kopka, J.: Arabidopsis REI-LIKE proteins activate ribosome biogenesis during cold acclimation. Scientific Reports 11 (1), 2410 (2021)

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74.

Journal Article

da Silva, V. C. H.; Martins, M. C. M.; Calderan-Rodrigues, M.J.; Artins, A.; Monte Bello, C.C.; Gupta, S.; Sobreira, T. J. P.; Riano-Pachon, D. M.; Mafra, V.; Caldana, C.: Shedding Light on the Dynamic Role of the "Target of Rapamycin" Kinase in the Fast-Growing C-4 Species Setaria viridis, a Suitable Model for Biomass Crops. Frontiers in Plant Science 12, 637508 (2021)

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75.

Journal Article

Dantas, L.L.B.; Dourado, M.M.; de Lima, N.O.; Cavaçana, N.; Nishiyama, M.; Souza, G.M.; Carneiro, M.S.; Caldana, C.; Hotta, C.T.: Field microenvironments regulate crop diel transcript and metabolite rhythms. New Phytologist (2021)

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76.

Journal Article

Duarte, G. T.; Pandey, P. K.; Vaid, N.; Alseekh, S.; Fernie, A. R.; Nikoloski, Z.; Laitinen, R.: Plasticity of rosette size in response to nitrogen availability is controlled by an RCC1-family protein. Plant, Cell and Environment (2021)

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77.

Journal Article

Duarte, G. T.; Volkova, P. Y.; Geras'kin, S. A.: A Pipeline for Non-model Organisms for de novo Transcriptome Assembly, Annotation, and Gene Ontology Analysis Using Open Tools: Case Study with Scots Pine. Bio-protocol 11 (3), e3912 (2021)

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78.

Journal Article

Dziasek, K.; Simon, L.; Lafon-Placette, C.; Laenen, B.; Wärdig, C.; Santos-González, J.; Slotte, T.; Köhler, C.: Hybrid seed incompatibility in Capsella is connected to chromatin condensation defects in the endosperm. PLoS Genetics 17 (2), e1009370 (2021)

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79.

Journal Article

Fernie, A. R.: Using landrace transcription factor alleles to increase yield in modern rice under low input agriculture. Journal of Plant Physiology 258-259, 153362 (2021)

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80.

Journal Article

Fernie, A. R.; Alseekh, S.; Liu, J.; Yan, J.: Using Precision Phenotyping to Inform de novo Domestication. Plant Physiology 186 (3), pp. 1397 - 1411 (2021)

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81.

Journal Article

Fernie, A. R.; Sonnewald, U.: Plant biotechnology for sustainable agriculture and food safety. Journal of Plant Physiology 261, 153416 (2021)

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82.

Journal Article

Fichtner, F.; Barbier, F. F.; Annunziata, M. G.; Feil, R.; Olas, J. J.; Mueller-Roeber, B.; Stitt, M.; Beveridge, C. A.; Lunn, J. E.: Regulation of shoot branching in Arabidopsis by trehalose 6-phosphate. New Phytologist 229 (4), pp. 2135 - 2151 (2021)

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83.

Journal Article

Filippou, P.; Zarza, X.; Antoniou, C.; Obata, T.; Villarroel, C.A.; Ganopoulos, I.; Harokopos, V.; Gohari, G.; Aidinis, V.; Madesis, P. et al.; Christou, A.; Fernie, A. R.; Tiburcio, A.F.; Fotopoulos, V.: Systems biology reveals key tissue-specific metabolic and transcriptional signatures involved in the response of Medicago truncatula plant genotypes to salt stress. Computational and Structural Biotechnology Journal 19, pp. 2133 - 2147 (2021)

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84.

Journal Article

Florez-Sarasa, I.; Welchen, E.; Racca, S.; Gonzalez, D.H.; Vallarino, J. G.; Fernie, A. R.; Ribas-Carbo, M.; Del-Saz, N.F.: Cytochrome c deficiency differentially affects the in vivo mitochondrial electron partitioning and primary metabolism depending on the photoperiod. Plants 10 (3), 444 (2021)

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85.

Journal Article

Franzisky, B. L.; Geilfus, C.-M.; Romo-Perez, M. L.; Fehrle, I.; Erban, A.; Kopka, J.; Zorb, C.: Acclimatisation of guard cell metabolism to long-term salinity. Plant, Cell and Environment 44 (3), pp. 870 - 884 (2021)

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86.

Journal Article

Freire, F.B.S.; Bastos, R.L.G.; Bret, R.S.C.; Cândido-Sobrinho, S.A.; Medeiros, D.B.; Antunes, W.C.; Fernie, A. R.; Daloso, D.M.: Mild reductions in guard cell sucrose synthase 2 expression leads to slower stomatal opening and decreased whole plant transpiration in Nicotiana tabacum L. Environmental and Experimental Botany 184, 104370 (2021)

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87.

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Friedrich, T.; Oberkofler, V.; Trindade, I.; Altmann, S.; Brzezinka, K.; Lämke, J.; Gorka, M.; Kappel, C.; Sokolowska, E.; Skirycz, A. et al.; Graf, A.; Bäurle, I.: Heteromeric HSFA2/HSFA3 complexes drive transcriptional memory after heat stress in Arabidopsis. Nature Communications 12 (1), 3426 (2021)

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88.

Journal Article

Gefen‐treves, S.; Bartholomäus, A.; Horn, F.; Zaborowski, A.B.; Tchernov, D.; Wagner, D.; Oren, A.; Kaplan, A.: The microbiome associated with the reef builder neogoniolithon sp. In the eastern mediterranean. Microorganisms 9 (7), 1374 (2021)

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89.

Journal Article

Gill, R. A.; Scossa, F.; King, G. J.; Golicz, A.; Tong, C.; Snowdon, R. J.; Fernie, A. R.; Liu, S.: On the Role of Transposable Elements in the Regulation of Gene Expression and Subgenomic Interactions in Crop Genomes. Critical Reviews in Plant Sciences 40 (2), pp. 157 - 189 (2021)

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90.

Journal Article

Ginsawaeng, O.; Gorka, M.; Erban, A.; Heise, C.; Brueckner, F.; Hoefgen, R.; Kopka, J.; Skirycz, A.; Hincha, D. K.; Zuther, E.: Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. International Journal of Molecular Sciences 22 (15), 8172 (2021)

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91.

Journal Article

Giraldo, N. D.; Correa, S. M.; Arbelaez, A.; Figueroa, F. L.; Rios-Estepa, R.; Atehortua, L.: Reducing self-shading effects in Botryococcus braunii cultures: effect of Mg2+ deficiency on optical and biochemical properties, photosynthesis and lipidomic profile. BIORESOURCES AND BIOPROCESSING 8 (1), 33 (2021)

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92.

Journal Article

Heyneke, E.; Hoefgen, R.: Meeting the complexity of plant nutrient metabolism with multi-omics approaches. Journal of Experimental Botany 72 (7), pp. 2261 - 2265 (2021)

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93.

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Hincha, D. K.; Zuther, E.; Popova, A. V.: Stabilization of Dry Sucrose Glasses by Four LEA_4 Proteins from Arabidopsis thaliana. Biomolecules 11 (5), 615 (2021)

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94.

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Höhner, R.; Day, P. M.; Zimmermann, S. E.; Lopez, L. S.; Krämer, M.; Giavalisco, P.; Correa Galvis, V.; Armbruster, U.; Schöttler, M. A.; Jahns, P. et al.; Krüger, S.; Kunz, H.-H.: Stromal NADH supplied by PHOSPHOGLYCERATE DEHYDROGENASE3 is crucial for photosynthetic performance. Plant Physiology 186 (1), pp. 142 - 167 (2021)

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95.

Journal Article

Israeli, A.; Burko, Y.; Shleizer-Burko, S.; Zelnik, I. D.; Sela, N.; Hajirezaei, M. R.; Fernie, A. R.; Tohge, T.; Ori, N.; Bar, M.: Coordinating the morphogenesis-differentiation balance by tweaking the cytokinin-gibberellin equilibrium. PLoS Genetics 17 (4), e1009537 (2021)

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96.

Journal Article

Jiang, L.; Yoshida, T.; Stiegert, S.; Yu, J.; Alseekh, S.; Lenhard, M.; Pérez-Alfocea, F.; Fernie, A. R.: Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance. Plant Physiology 185 (2), pp. 352 - 368 (2021)

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97.

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Jorge, T. F.; Ramalho, J. C.; Alseekh, S.; Pais, I. P.; Leitão, A. E.; Rodrigues, A. P.; Scotti-Campos, P.; Ribeiro-Barros, A. I.; Fernie, A. R.; António, C.: Will Casuarina glauca Stress Resilience Be Maintained in the Face of Climate Change? Metabolites 11 (9), 593 (2021)

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98.

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Julca, I.; Ferrari, C.; Flores-Tornero, M.; Proost, S.; Lindner, A.-C.; Hackenberg, D.; Steinbachová, L.; Michaelidis, C.; Gomes Pereira, S.; Misra, C. S. et al.; Kawashima, T.; Borg, M.; Berger, F.; Goldberg, J.; Johnson, M.; Honys, D.; Twell, D.; Sprunck, S.; Dresselhaus, T.; Becker, J. D.; Mutwil, M.: Comparative transcriptomic analysis reveals conserved programmes underpinning organogenesis and reproduction in land plants. Nature Plants 7, pp. 1143 - 1159 (2021)

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99.

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Kanbar, A.; Shakeri, E.; Alhajturki, D.; Riemann, M.; Bunzel, M.; Morgano, M.T.; Stapf, D.; Nick, P.: Sweet versus grain sorghum: Differential sugar transport and accumulation are linked with vascular bundle architecture. Industrial Crops and Products 167, 113550 (2021)

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100.

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Kerbler, S.M.-L.; Natale, R.; Fernie, A. R.; Zhang, Y.: From Affinity to Proximity Techniques to Investigate Protein Complexes in Plants. International Journal of Molecular Sciences 22 (13), 7101 (2021)

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Journal Article (3842)