All Publications | Max Planck Institute of Molecular Plant Physiology

Max Planck Institute of Molecular Plant Physiology

Journal Article (4076)

51.

Journal Article

Sun, Y.; Zhou, Y.; Long, Q.; Xing, J.; Guo, P.; Liu, Y.; Zhang, C.; Zhang, Y.; Fernie, A. R.; Shi, Y. et al.; Luo, Y.; Luo, J.; Jin, C.: OsBCAT2, a gene responsible for the degradation of branched-chain amino acids, positively regulates salt tolerance by promoting the synthesis of vitamin B5. New Phytologist 241 (6), pp. 2558 - 2574 (2024)

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52.

Journal Article

Carreno-Quintero, N.; Tohge, T.; Van Acker, R.; McKee, L.S.; Zhou, Q.; Bolze, A.; Xing, X.; Özparpucu, M.; Rüggeberg, M.; Piofczyk, T. et al.; Koram, Y.; Bulone, V.; Boerjan, W.; Fernie, A. R.; Fraser, P.D.: Non-targeted discovery of high-value bio-products in Nicotiana glauca L: a potential renewable plant feedstock. Bioresources and Bioprocessing 11, 12 (2024)

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53.

Journal Article

Liu, N.; Du, Y.; Yan, S.; Chen, W.; Deng, M.; Xu, S.; Wang, H.; Zhan, W.; Huang, W.; Yin, Y. et al.; Yang, X.; Zhao, Q.; Fernie, A. R.; Yan, J.: The light and hypoxia induced gene ZmPORB1 determines tocopherol content in the maize kernel. Science China Life Sciences 67, pp. 435 - 448 (2024)

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54.

Journal Article

Xin, J.; Zhou, Y.; Qiu, Y.; Geng, H.; Wang, Y.; Song, Y.; Liang, J.; Yan, K.: Structural insights into AtABCG25, an angiosperm-specific abscisic acid exporter. Plant Communications 5 (1), 100776 (2024)

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55.

Journal Article

Yin, B.; Jia, J.; Sun, X.; Hu, X.; Ao, M.; Liu, W.; Tian, Z.; Liu, H.; Li, D.; Tian, W. et al.; Hao, Y.; Xia, X.; Sade, N.; Brotman, Y.; Fernie, A. R.; Chen, J.; He, Z.; Chen, W.: Dynamic metabolite QTL analyses provide novel biochemical insights into kernel development and nutritional quality improvement in common wheat. Plant Communications (2024)

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56.

Journal Article

Apodiakou, A.; Alseekh, S.; Hoefgen, R.; Whitcomb, S. J.: Overexpression of SLIM1 transcription factor accelerates vegetative development in Arabidopsis thaliana. Frontiers in Plant Science 15, 1327152 (2024)

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57.

Journal Article

Barro-Trastoy, D.; Gomez, M.D.; Tornero, P.; Perez-Amador, M.A.: Hormonal Regulation of Ovule Initiation in Arabidopsis. Journal of Plant Growth Regulation (2024)

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58.

Journal Article

Bente, H.; Köhler, C.: Molecular basis and evolutionary drivers of endosperm-based hybridization barriers. Plant Physiology, kiae050 (2024)

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59.

Journal Article

Daubermann, A. G.; Lima, V. F.; Erban, A.; Kopka, J.; Fernie, A. R.; Schwarzländer, M.; dos Anjos, L.; Daloso, D. M.: Novel guard cell sink characteristics revealed by a multi-species/cell-types meta-analysis of 13C-labelling experiments. Theoretical and Experimental Plant Physiology (2024)

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60.

Journal Article

Hsieh, Y.; Lu, C.-Y.; Liu, P.-Y.; Kao, J.-M.; Yang, S.-Y.; Wu, C.-Y.; Wong, J.-W.M.; Shikina, S.; Fan, T.-Y.; Yang, S.-H.: Successive responses of three coral holobiont components (coral hosts, symbiotic algae, and bacteria) to daily temperature fluctuations. Ecological Indicators 158, 111515 (2024)

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61.

Journal Article

John, A.; Krämer, M.; Lehmann, M.; Kunz, H.-H.; Aarabi, F.; Alseekh, S.; Fernie, A. R.; Sommer, F.; Schroda, M.; Zimmer, D. et al.; Mühlhaus, T.; Peisker, H.; Gutbrod, K.; Dörmann, P.; Neunzig, J.; Philippar, K.; Neuhaus, H. E.: Degradation of FATTY ACID EXPORT PROTEIN1 by RHOMBOID-LIKE PROTEASE11 contributes to cold tolerance in Arabidopsis. The Plant Cell, koae011 (2024)

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62.

Journal Article

Li, J.; Martin, C.; Fernie, A. R.: Biofortification’s contribution to mitigating micronutrient deficiencies. Nature Food 5, pp. 19 - 27 (2024)

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63.

Journal Article

Loiacono, F.V.; Bock, R.: An RNA polymerase that became a Swiss army knife. Cell 187 (5), pp. 1106 - 1108 (2024)

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64.

Journal Article

Lv, Y.; Zhu, J.; Huang, S.; Xing, X.; Zhou, S.; Yao, H.; Yang, Z.; Liu, L.; Huang, S.; Miao, Y. et al.; Liu, X.; Fernie, A. R.; Ding, Y.; Luo, J.: Metabolome profiling and transcriptome analysis filling the early crucial missing steps of piperine biosynthesis in Piper nigrum L. The Plant Journal 117 (1), pp. 107 - 120 (2024)

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65.

Journal Article

Pinsorn, P.; Hoefgen, R.; Sirikantaramas, S.: The novel durian (Durio zibethinus L.) homeodomain-leucine zipper (DzHD-ZIP) transcription factor 1.8 regulates the production of volatile sulfur compounds during fruit ripening. Postharvest Biology and Technology 210, 112776 (2024)

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66.

Journal Article

Schilling, F.; Schumacher, C.; Koehl, K. I.; Sprenger, H.; Kopka, J.; Peters, R.; Haas, M.; Zuther, E.; Horn, R.: Whole-genome sequencing of tetraploid potato varieties reveals different strategies for drought tolerance. Scientific Reports 14 (1), 5476 (2024)

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67.

Journal Article

Zuther, E.; Erban, A.; Kopka, J.; Pagter, M.: Different metabolic adaptation strategies after overwintering in Eutrema sp. and Arabidopsis accessions under field conditions in Germany. Physiologia Plantarum 176 (1), e14201 (2024)

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68.

Journal Article

Sageman-Furnas, K.; Duarte, G. T.; Laitinen, R. A.E.: Detailing early shoot growth arrest in Kro-0 x BG-5 hybrids of Arabidopsis thaliana. Plant and Cell Physiology, pcad167 (2023)

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69.

Journal Article

Karakas, E.; Ferrante, P.; Schafleitner, R.; Giuliano, G.; Fernie, A. R.; Alseekh, S.: Plant Sample Collection and Shipment for Multi-omic Analyses and Phytosanitary Evaluation. Current Protocols 3 (12), e952 (2023)

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70.

Journal Article

Murik, O.; Geffen, O.; Shotland, Y.; Fernandez-Pozo, N.; Ullrich, K. K.; Walther, D.; Rensing, S. A.; Treves, H.: Genomic imprints of unparalleled growth. New Phytologist 241 (3), pp. 1144 - 1160 (2023)

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71.

Journal Article

Lai, D.; Zhang, K.; He, Y.; Fan, Y.; Li, W.; Shi, Y.; Gao, Y.; Huang, X.; He, J.; Zhao, H. et al.; Lu, X.; Xiao, Y.; Cheng, J.; Ruan, J.; Georgiev, M. I.; Fernie, A. R.; Zhou, M.: Multi-omics identification of a key glycosyl hydrolase gene FtGH1 involved in rutin hydrolysis in Tartary buckwheat (Fagopyrum tataricum). Plant Biotechnology Journal (2023)

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72.

Journal Article

Zhang, Y.; Wiese, L.; Fang, H.; Alseekh, S.; de Souza, L. P.; Scossa, F.; Molloy, J.; Christmann, M.; Fernie, A. R.: Synthetic biology identifies the minimal gene set required for Paclitaxel biosynthesis in a plant chassis. Molecular Plant 16 (12), pp. 1951 - 1961 (2023)

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73.

Journal Article

Arend, M.; Yuan, Y.; Ruiz-Sola, M.Á.; Omranian, N.; Nikoloski, Z.; Petroutsos, D.: Widening the landscape of transcriptional regulation of green algal photoprotection. Nature Communications 14 (1), 2687 (2023)

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74.

Journal Article

Artins, A.; Fernie, A. R.: FCS-like zinc finger proteins maintain energy homeostasis during stresses. Trends in Plant Science 28 (12), pp. 1347 - 1349 (2023)

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75.

Journal Article

Back, G.; Walther, D.: Predictions of DNA mechanical properties at a genomic scale reveal potentially new functional roles of DNA flexibility. NAR: genomics and bioinformatics 5 (4), lqad097 (2023)

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76.

Journal Article

Barros, J.A.S.; Cavalcanti, J.H.F.; Pimentel, K.G.; Magen, S.; Soroka, Y.; Weiss, S.; Medeiros, D.B.; Nunes-Nesi, A.; Fernie, A. R.; Avin-Wittenberg, T. et al.; Araújo, W.L.: The interplay between autophagy and chloroplast vesiculation pathways under dark-induced senescence. Plant, Cell and Environment 46 (12), pp. 3721 - 3736 (2023)

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77.

Journal Article

Bulut, M.; Nunes-Nesi, A.; Fernie, A. R.; Alseekh, S.: Characterization of PetM cytochrome b6f subunit 7 domain-containing protein in tomato. Horticulture Research 10 (12), uhad224 (2023)

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78.

Journal Article

Duque-Jaramillo, A.; Ulmer, N.; Alseekh, S.; Bezrukov, I.; Fernie, A. R.; Skirycz, A.; Karasov, T.L.; Weigel, D.: The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava. New Phytologist 240 (5), pp. 1961 - 1975 (2023)

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79.

Journal Article

Fernie, A. R.: If you go down to the woods today you're in for a big surprise: mapping the diverse phenotypes of the European woodland strawberry. The Plant Journal 116 (5), pp. 1199 - 1200 (2023)

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80.

Journal Article

Giese, J.; Eirich, J.; Walther, D.; Zhang, Y.; Lassowskat, I.; Fernie, A. R.; Elsässer, M.; Maurino, V. G.; Schwarzländer, M.; Finkemeier, I.: The interplay of post-translational protein modifications in Arabidopsis leaves during photosynthesis induction. The Plant Journal 116 (4), pp. 1172 - 1193 (2023)

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81.

Journal Article

Gyuzeleva, D.; Benina, M.; Ivanova, V.; Vatov, E.; Alseekh, S.; Mladenova, T.; Mladenov, R.; Todorov, K.; Bivolarska, A.; Stoyanov, P.: Metabolome Profiling of Marrubium peregrinum L. and Marrubium friwaldskyanum Boiss Reveals Their Potential as Sources of Plant-Based Pharmaceuticals. International Journal of Molecular Sciences 24 (23), 17035 (2023)

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82.

Journal Article

Langary, D.; Küken, A.; Nikoloski, Z.: The unraveling of balanced complexes in metabolic networks. Scientific Reports 13 (1), 5712 (2023)

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83.

Journal Article

Nattermann, M.; Wenk, S.; Pfister, P.; He, H.; Lee, S.H.; Szymanski, W.; Guntermann, N.; Zhu, F.; Nickel, L.; Wallner, C. et al.; Zarzycki, J.; Paczia, N.; Gaißert, N.; Franciò, G.; Leitner, W.; Gonzalez, R.; Erb, T.J.: Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo. Nature Communications 14 (1), 2682 (2023)

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84.

Journal Article

Pinsorn, P.; Sanachai, K.; Rungrotmongkol, T.; Hoefgen, R.; Watanabe, M.; Brückner, F.; Nakabayashi, R.; Mori, T.; Oikawa, A.; Sasaki, R. et al.; Sucharitakul, J.; Saito, K.; Sirikantaramas, S.: Sulfur metabolism in durian pulps: Factors contributing to the production of volatile sulfur compounds during fruit ripening. Postharvest Biology and Technology 206, 112533 (2023)

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85.

Journal Article

Qian, D.; Xi, J.; Nie, Y.; Zou, M.; Zhang, J.; Alseekh, S.; Fernie, A. R.; Chen, J.; Huang, L.: Chemical characterization of dicaffeoyl polyamine derivatives to understand specific secondary metabolites in goji berry. Journal of Food Composition and Analysis 122, 105434 (2023)

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86.

Journal Article

Tan, Q.W.; Lim, P.K.; Chen, Z.; Pasha, A.; Provart, N.; Arend, M.; Nikoloski, Z.; Mutwil, M.: Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses. Nature Communications 14 (1), 986 (2023)

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87.

Journal Article

Vicente, M. H.; MacLeod, K.; Zhu, F.; Rafael, D. D.; Figueira, A.; Fernie, A. R.; Mohareb, F.; Kevei, Z.; Thompson, A. J.; Zsögön, A. et al.; Peres, L. E. P.: The ORGAN SIZE (ORG) locus modulates both vegetative and reproductive gigantism in domesticated tomato. Annals of Botany 132 (7), pp. 1233 - 1248 (2023)

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88.

Journal Article

Youssef, W.A.; Feil, R.; Saint-Sorny, M.; Johnson, X.; Lunn, J. E.; Grimm, B.; Brzezowski, P.: Singlet oxygen-induced signalling depends on the metabolic status of the Chlamydomonas reinhardtii cell. Communications Biology 6, 529 (2023)

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89.

Journal Article

Aarabi, F.; Ghigi, A.; Wijesingha Ahchige, M.; Bulut, M.; Geigenberger, P.; Neuhaus, H. E.; Sampathkumar, A.; Alseekh, S.; Fernie, A. R.: Genome-Wide Association Study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation. Plant Physiology 193 (3), pp. 2037 - 2054 (2023)

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90.

Journal Article

Bulut, M.; Wendenburg, R.; Bitocchi, E.; Bellucci, E.; Kroc, M.; Gioia, T.; Susek, K.; Papa, R.; Fernie, A. R.; Alseekh, S.: A Comprehensive Metabolomics and Lipidomics Atlas for the Legumes Common Bean, Chickpea, Lentil and Lupin. The Plant Journal 116 (4), pp. 1152 - 1171 (2023)

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91.

Journal Article

Bysani, V. R.; Alam, A. S.M.; Bar-Even, A.; Machens, F.: Engineering and evolution of the complete Reductive Glycine Pathway in Saccharomyces cerevisiae for formate and CO2 assimilation. Metabolic Engineering 81, pp. 167 - 181 (2023)

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92.

Journal Article

El-Azaz, J.; Moore, B.; Takeda-Kimura, Y.; Yokoyama, R.; Wijesingha Ahchige, M.; Chen, X.; Schneider, M.; Maeda, H.A.: Coordinated regulation of the entry and exit steps of aromatic amino acid biosynthesis supports the dual lignin pathway in grasses. Nature Communications 14, 7242 (2023)

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93.

Journal Article

Fernie, A. R.; Yan, J.; Aharoni, A.; Ma, J.: Editorial: The past, present and future of The Plant Journal Resource Articles. The Plant Journal 116 (4), pp. 967 - 973 (2023)

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94.

Journal Article

Keller, J.-M.; Frieboes, M. J.; Jödecke, L.; Kappel, S.; Wulff, N.; Rindfleisch, T.; Sandoval-Ibanez, O.; Gerlach, I.; Thiele, W.; Bock, R. et al.; Eirich, J.; Finkemeier, I.; Schünemann, D.; Zoschke, R.; Schöttler, M. A.; Armbruster, U.: Eukaryote-specific assembly factor DEAP2 mediates an early step of photosystem II assembly in Arabidopsis. Plant Physiology 193 (3), pp. 1970 - 1986 (2023)

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95.

Journal Article

Kudo, S. N.; Monte Bello, C.C.; Artins, A.; Caldana, C.; Satake, A.: Assessing the impacts of genetic defects on starch metabolism in Arabidopsis plants using the carbon homeostasis model. Journal of the Royal Society Interface 20 (208), 20230426 (2023)

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96.

Journal Article

Küken, A.; Treves, H.; Nikoloski, Z.: A simulation-free constrained regression approach for flux estimation in isotopically nonstationary metabolic flux analysis with applications in microalgae. Frontiers in Plant Science 14, 1140829 (2023)

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97.

Journal Article

Li, C.; Huang, W.; Han, X.; Zhao, G.; Zhang, W.; He, W.; Nie, B.; Chen, X.; Zhang, T.; Bai, W. et al.; Zhang, X.; He, J.; Zhao, C.; Fernie, A. R.; Tschaplinski, T.J.; Yang, X.; Yan, S.; Wang, L.: Diel dynamics of multi-omics in elkhorn fern provide new insights into weak CAM photosynthesis. Plant Communications 4 (5), 100594 (2023)

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98.

Journal Article

Moura Ferreira, M.A.D.; Wendering, P.; Arend, M.; Batista da Silveira, W.; Nikoloski, Z.: Accurate prediction of in vivo protein abundances by coupling constraint-based modelling and machine learning. Metabolic Engineering 80, pp. 184 - 192 (2023)

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99.

Journal Article

Pratx, L.; Wendering, P.; Kappel, C.; Nikoloski, Z.; Bäurle, I.: Histone retention preserves epigenetic marks during heat stress-induced transcriptional memory in plants. The EMBO Journal 42, e113595 (2023)

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100.

Journal Article

Shen, S.; Wang, S.; Yang, C.; Wang, C.; Zhou, Q.; Zhou, S.; Zhang, R.; Li, Y.; Wang, Z.; Dai, L. et al.; Peng, W.; Hao, Y.; Guo, H.; Cao, G.; Liu, X.; Yao, F.; Xu, Q.; Fernie, A. R.; Luo, J.: Elucidation of the melitidin biosynthesis pathway in pummelo. Journal of Integrative Plant Biology 65 (11), pp. 2505 - 2518 (2023)

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