All Publications

51.

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Rasul, F.; Gupta, S.; Olas, J.J.; Gechev, T.; Sujeeth, N.; Mueller-Roeber, B.: Priming with a seaweed extract strongly improves drought tolerance in arabidopsis. International Journal of Molecular Sciences 22 (3), 1469 (2021)

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52.

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Samo, N.; Ebert, A.; Kopka, J.; Mozgová, I.: Plant chromatin, metabolism and development – an intricate crosstalk. Current Opinion in Plant Biology 61, 102002 (2021)

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53.

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Sánchez-Guerrero, A.; Nadal, M.; Florez-Sarasa, I.; Ribas-Carbó, M.; Vallarino, J. G.; Brasi-Velasco, S. D.; Fernie, A. R.; Flexas, J.; Jiménez, A.; Sevilla, F.: Decreased Levels of Thioredoxin o1 Influences Stomatal Development and Aperture but Not Photosynthesis under Non-Stress and Saline Conditions. International Journal of Molecular Sciences 22 (3), 1063 (2021)

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54.

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Scheffen, M.; Marchal, D.G.; Beneyton, T.; Schuller, S.K.; Klose, M.; Diehl, C.; Lehmann, J.; Pfister, P.; Carrillo, M.; He, H. et al.; Aslan, S.; Cortina, N.S.; Claus, P.; Bollschweiler, D.; Baret, J.-C.; Schuller, J.M.; Zarzycki, J.; Bar-Even, A.; Erb, T.J.: A new-to-nature carboxylation module to improve natural and synthetic CO2 fixation. Nature Catalysis 4, pp. 105 - 115 (2021)

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55.

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Schneider, R.; Klooster, K.; Picard, K.L.; van der Gucht, J.; Demura, T.; Janson, M.; Sampathkumar, A.; Deinum, E.E.; Ketelaar, T.; Persson, S.: Long-term single-cell imaging and simulations of microtubules reveal principles behind wall patterning during proto-xylem development. Nature Communications 12 (1), 669 (2021)

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56.

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Schultz, S.W.; Agudo-Canalejo, J.; Chino, H.; Migliano, S.M.; Saito, C.; Koyama-Honda, I.; Stenmark, H.; Brech, A.; Mizushima, N.; Knorr, R. L. et al.; May, A.I.: Should I bend or should I grow: the mechanisms of droplet-mediated autophagosome formation. Autophagy (2021)

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57.

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Schulz, P.; Piepenburg, K.; Lintermann, R.; Herde, M.; Schöttler, M. A.; Schmidt, L. K.; Ruf, S.; Kudla, J.; Romeis, T.; Bock, R.: Improving plant drought tolerance and growth under water limitation through combinatorial engineering of signaling networks. Plant Biotechnology Journal 19 (1), pp. 74 - 86 (2021)

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58.

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Schumacher, C.; Krannich, C. T.; Maletzki, L.; Koehl, K. I.; Kopka, J.; Sprenger, H.; Hincha, D. K.; Seddig, S.; Peters, R.; Hamera, S. et al.; Zuther, E.; Haas, M.; Horn, R.: Unravelling Differences in Candidate Genes for Drought Tolerance in Potato (Solanum tuberosum L.) by Use of New Functional Microsatellite Markers. Genes 12 (4), 494 (2021)

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59.

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Scossa, F.; Alseekh, S.; Fernie, A. R.: Integrating multi-omics data for crop improvement. Journal of Plant Physiology 257, 153352 (2021)

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60.

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Scossa, F.; Fernie, A. R.: When a Crop Goes Back to the Wild: Feralization. Trends in Plant Science (2021)

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61.

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Scossa, F.; Fernie, A. R.: Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants? Computational and Structural Biotechnology Journal 19, pp. 1579 - 1594 (2021)

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62.

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Shen, S.; Peng, M.; Fang, H.; Wang, Z.; Zhou, S.; Jing, X.; Zhang, M.; Yang, C.; Guo, H.; Li, Y. et al.; Lei, L.; Shi, Y.; Sun, Y.; Liu, X.; Xu, C.; Tohge, T.; Yuan, M.; Fernie, A. R.; Ning, Y.; Wang, G.; Luo, J.: An Oryza-specific hydroxycinnamoyl tyramine gene cluster contributes to enhanced disease resistance. Science Bulletin (2021)

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63.

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Shivhare, D.; Musialak-Lange, M.; Julca, I.; Gluza, P.; Mutwil, M.: Removing auto-activators from yeast-two-hybrid assays by conditional negative selection. Scientific Reports 11 (1), 5477 (2021)

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64.

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Shivhare, D.; Musialak-Lange, M.; Julca, I.; Gluza, P.; Mutwil, M.: Removing auto-activators from yeast-two-hybrid assays by conditional negative selection. Scientific Reports 11, 5477 (2021)

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65.

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Staykov, N. S.; Angelov, M.; Petrov, V.; Minkov, P.; Kanojia, A.; Guinan, K. J.; Alseekh, S.; Fernie, A. R.; Sujeeth, N.; Gechev, T. S.: An Ascophyllum nodosum-Derived Biostimulant Protects Model and Crop Plants from Oxidative Stress. Metabolites 11 (1), 24 (2021)

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66.

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Takahashi, D.; Johnson, K.; Hao, P.; Tuong, T.; Erban, A.; Sampathkumar, A.; Bacic, A.; Livingston III, D. P.; Kopka, J.; Kuroha, T. et al.; Yokoyama, R.; Nishitani, K.; Zuther, E.; Hincha, D. K.: Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation. Plant, Cell and Environment 44 (3), pp. 915 - 930 (2021)

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67.

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Thirumalaikumar, V. P.; Wagner, M.; Balazadeh, S.; Skirycz, A.: Autophagy is responsible for the accumulation of proteogenic dipeptides in response to heat stress in Arabidopsis thaliana. The FEBS Journal 288 (1), pp. 281 - 292 (2021)

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68.

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Tiozon, R.J.N.; Fernie, A. R.; Sreenivasulu, N.: Meeting human dietary vitamin requirements in the staple rice via strategies of biofortification and post-harvest fortification. Trends in Food Science and Technology 109, pp. 65 - 82 (2021)

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69.

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Tong, H.; Nikoloski, Z.: Machine learning approaches for crop improvement: Leveraging phenotypic and genotypic big data. Journal of Plant Physiology 257, 153354 (2021)

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70.

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Volkova, P.Y.; Duarte, G. T.; Kazakova, E.A.; Makarenko, E.S.; Bitarishvili, S.V.; Bondarenko, V.S.; Perevolotskii, A.N.; Geras'kin, S.A.; Garbaruk, D.K.; Turchin, L.M.: Radiosensitivity of herbaceous plants to chronic radiation exposure: Field study in the Chernobyl exclusion zone. Science of the Total Environment 777, 146206 (2021)

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71.

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Wu, G.; Bock, R.: GUN control in retrograde signaling: How GENOMES UNCOUPLED proteins adjust nuclear gene expression to plastid biogenesis. The Plant Cell (2021)

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72.

Journal Article

Wu, S.; Alseekh, S.; Brotman, Y.; Fernie, A. R.: Metabolomic Analysis of Natural Variation in Arabidopsis. Methods in Molecular Biology 2200, pp. 393 - 411 (2021)

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73.

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Yan, S.; Liu, Q.; Naake, T.; Huang, W.; Chen, M.; Kong, Q.; Zhang, S.; Li, W.; Li, X.; Liu, Q. et al.; Yang, J.; Fernie, A. R.; Liu, B.: OsGF14b modulates defense signaling pathways in rice panicle blast response. Crop Journal (2021)

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74.

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Yoshida, T.; Fernie, A. R.; Shinozaki, K.; Takahashi, F.: Long-distance stress and developmental signals associated with abscisic acid signaling in environmental responses. The Plant Journal 105 (2 - SI), pp. 477 - 488 (2021)

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75.

Journal Article

Zhai, Z.; Keereetaweep, J.; Liu, H.; Feil, R.; Lunn, J. E.; Shanklin, J.: Expression of a Bacterial Trehalose-6-phosphate Synthase otsA Increases Oil Accumulation in Plant Seeds and Vegetative Tissues. Frontiers in Plant Science 12, 656962 (2021)

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76.

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Zhang, W.; Luo, C.; Scossa, F.; Zhang, Q.; Usadel, B.; Fernie, A. R.; Mei, H.; Wen, W.: A phased genome based on single sperm sequencing reveals crossover pattern and complex relatedness in tea plants. The Plant Journal 105 (1), pp. 197 - 208 (2021)

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77.

Journal Article

Zhang, Y.; Fernie, A. R.: Metabolons, Enzyme-Enzyme Assemblies that Mediate Substrate Channeling, and Their Roles in Plant Metabolism. Plant Communications 2, 100081 (2021)

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78.

Journal Article

Fu, H.-Y.; Ghandour, R.; Ruf, S.; Zoschke, R.; Bock, R.; Schöttler, M. A.: The availability of neither D2 nor CP43 limits the biogenesis of photosystem II in tobacco. Plant Physiology 185 (3), pp. 1111 - 1130 (2020)

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79.

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Kleine, T.; Nägele, T.; Neuhaus, H. E.; Schmitz-Linneweber, C.; Fernie, A. R.; Geigenberger, P.; Grimm, B.; Kaufmann, K.; Klipp, E.; Meurer, J. et al.; Möhlmann, T.; Mühlhaus, T.; Naranjo, B.; Nickelsen, J.; Richter, A.; Ruwe, H.; Schroda, M.; Schwenkert, S.; Trentmann, O.; Willmund, F.; Zoschke, R.; Leister, D.: Acclimation in plants – the Green Hub consortium. The Plant Journal (2020)

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80.

Journal Article

Leskow, C. C.; Conte, M.; del Pozo, T.; Bermúdez, L.; Lira, B. S.; Gramegna, G.; Baroli, I.; Burgos, E.; Zavallo, D.; Kamenetzky, L. et al.; Asís, R.; Gonzalez, M.; Fernie, A. R.; Rossi, M.; Osorio, S.; Carrari, F.: The cytosolic invertase NI6 affects vegetative growth, flowering, fruit set and yield in tomato. Journal of Experimental Botany 72 (7), pp. 2525 - 2543 (2020)

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81.

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Naake, T.; Maeda, H. A.; Proost, S.; Tohge, T.; Fernie, A. R.: Kingdom-wide analysis of the evolution of the plant type III polyketide synthase superfamily. Plant Physiology (2020)

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82.

Journal Article

Pignocchi, C.; Ivakov, A.; Feil, R.; Trick, M.; Pike, M.; Wang, T. L.; Lunn, J. E.; Smith, A. M.: Restriction of cytosolic sucrose hydrolysis profoundly alters development, metabolism and gene expression in Arabidopsis roots. Journal of Experimental Botany 72 (5), pp. 1850 - 1863 (2020)

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83.

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Burgos, E.; Luca, D.; Belen, M.; Diouf, I.; de Haro; A., L.; Albert, E.; Sauvage, C.; Jian Tao, Z.; Bermudez, L. et al.; Asís, R.; Nunes Nesi, A.; Matringe, M.; Brehelin, C.; Guiraud, T.; Ferrand, C.; Atienza, I.; Jorly, J.; Mauxion, J. P.; Baldet, P.; Fernie, A. R.; Quadrana, L.; Rothan, C.; Causse, M.; Carrari, F.: Validated MAGIC and GWAS populations mapping reveal the link between vitamin E contents and natural variation in chorismate metabolism in tomato. The Plant Journal (2020)

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84.

Journal Article

Di Vittori, V.; Bitocchi, E.; Rodriguez, M.; Alseekh, S.; Bellucci, E.; Nanni, L.; Gioia, T.; Marzario, S.; Logozzo, G.; Rossato, M. et al.; De Quattro, C.; Murgia, M. L.; Ferreira, J. J.; Campa, A.; Xu, C.; Fiorani, F.; Sampathkumar, A.; Fröhlich, A.; Attene, G.; Delledonne, M.; Usadel, B.; Fernie, A. R.; Rau, D.; Papa, R.: Pod indehiscence in common bean is associated to the fine regulation of PvMYB26. Journal of Experimental Botany 72 (5), pp. 1617 - 1633 (2020)

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85.

Journal Article

Jiang, L.; Yoshida, T.; Stiegert, S.; Jing, Y.; Alseekh, S.; Lenhard, M.; Pérez-Alfocea, F.; Fernie, A. R.: Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance. Plant Physiology 185 (2), pp. 352 - 368 (2020)

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86.

Journal Article

Moreno, J.C.; Mi, J.; Alagoz, Y.; Al-Babili, S.: Plant Apocarotenoids: From Retrograde Signaling to Interspecific Communication. The Plant Journal (2020)

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87.

Journal Article

Popov, V. N.; Syromyatnikov, M. Y.; Fernie, A. R.; Chakraborty, S.; Gupta, K. J.; Igamberdiev, A. U.: The uncoupling of respiration in plant mitochondria: Keeping reactive oxygen and nitrogen species under control. Journal of Experimental Botany (2020)

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88.

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Razaghi-Moghadam, Z.; Nikoloski, Z.: GeneReg: A constraint-based approach for design of feasible metabolic engineering strategies at the gene level. Bioinformatics (2020)

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89.

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Davies, B.; Roberts, J.; Raines, C.; Lunn, J. E.: Retirement of Mary Traynor, executive editor of JXB (1995–2020). Journal of Experimental Botany 71 (19), pp. 5719 - 5720 (2020)

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90.

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Nakamura, M.; Batista, R. A.; Köhler, C.; Hennig, L.: Polycomb Repressive Complex 2-mediated histone modification H3K27me3 is associated with embryogenic potential in Norway spruce. Journal of Experimental Botany 71 (20), pp. 6366 - 6378 (2020)

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91.

Journal Article

Zaborowski, A. B.; Walther, D.: Determinants of correlated expression of transcription factors and their target genes. Nucleic Acids Research 48 (20), pp. 11347 - 11369 (2020)

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92.

Journal Article

Feitosa-Araujo, E.; da Fonseca Pereira, P.; Miranda Pena, M.; Medeiros, D.B.; de Souza, L. P.; Yoshida, T.; Weber, A. P.M.; Araújo, W. L.; Fernie, A. R.; Schwarzländer, M. et al.; Nunes-Nesi, A.: Changes in intracellular NAD status affect stomatal development in an abscisic acid-dependent manner. The Plant Journal (2020)

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Journal Article

Cotton, C. A. R.; Bernhardsgrütter, I.; He, H.; Burgener, S.; Schulz, L.; Paczia, N.; Dronsella, B.; Erban, A.; Toman, S.; Dempfle, M. et al.; de Maria, A.; Kopka, J.; Lindner, S. N.; Erb, T. J.; Bar-Even, A.: Underground isoleucine biosynthesis pathways in E. coli. eLife 9, e54207 (2020)

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94.

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Ramirez, L. C.; Calvo Tusell, C.; Stoffel, G. M. M.; Lindner, S. N.; Osuna, S.; Erb, T. J.; Garcia-Borràs, M.; Bar-Even, A.; Acevedo-Rocha, C. G.: In vivo selection for formate dehydrogenases with high efficiency and specificity towards NADP+. ACS Catalysis 10, pp. 7512 - 7525 (2020)

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95.

Journal Article

Sewelam, N.; Brilhaus, D.; Bräutigam, A.; Alseekh, S.; Fernie, A. R.; Maurino, V. G.: Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes. Journal of Experimental Botany 71 (16), pp. 5098 - 5112 (2020)

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96.

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Zhu, F.; Luo, T.; Liu, C.; Wang, Y.; Zheng, L.; Xiao, X.; Zhang, M.; Yang, H.; Yang, W.; Xu, R. et al.; Zeng, Y.; Ye, J.; Xu, J.; Xu, J.; Larkin, R. M.; Wang, P.; Wen, W.; Deng, X.; Fernie, A. R.; Cheng, Y.: A NAC transcription factor and its interaction protein hinder abscisic acid biosynthesis by synergistically repressing NCED5 in Citrus reticulata. Journal of Experimental Botany 71 (12), pp. 3613 - 3625 (2020)

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97.

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Borghi, M.; Fernie, A. R.: Outstanding questions in flower metabolism. The Plant Journal 103 (4), pp. 1275 - 1288 (2020)

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98.

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Cesarino, I.; Ioio, R. D.; Kirschner, G. K.; Ogden, M.; Picard, K. L.; Rast-Somssich, M. I.; Somssich, M.: Plant Science’s Next Top Models. Annals of Botany 126 (1), pp. 1 - 23 (2020)

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99.

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Zhang, Y.; Fernie, A. R.: Stable and temporary enzyme complexes and metabolons involved in energy and redox metabolism. ANTIOXIDANTS & REDOX SIGNALING (2020)

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Brito, D. S.; Agrimi, G.; Charton, L.; Brilhaus, D.; Bitetto, M. G.; Lana-Costa, J.; Messina, E.; Nascimento, C. P.; Araújo, E. F.; Viana Pires, M. et al.; Pérez-Díaz, J. L.; Obata, T.; Porcelli, V.; Palmieri, L.; Araújo, W. L.; Weber, A. P. M.; Linka, N.; Fernie, A. R.; Palmieri, F.; Nunes-Nesi, A.: Biochemical and Functional Characterization of a Mitochondrial Citrate Carrier in Arabidopsis thaliana. Biochemical Journal 477 (9), pp. 1759 - 1777 (2020)

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Journal Article (3741)