All Publications

Max Planck Institute of Molecular Plant Physiology

Journal Article (4261)

101.

Journal Article

Weiller, F.; Diniz, I.; Pimentel, D.; Erban, A.; Reis, P.; Soares, F.; Rego, C.; Kopka, J.; Fortes, A.M.: Metabolomic analysis of grapes and leaves from symptomatic and asymptomatic Vitis vinifera grapevines with Esca disease. Current Opinion in Plant Biology 40, 100378 (2024)

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102.

Journal Article

Wijesingha Ahchige, M.; Fisher, J.; Sokolowska, E.; Lyall, R.; Illing, N.; Skirycz, A.; Zamir, D.; Alseekh, S.; Fernie, A. R.: The variegated canalized-1 tomato mutant is linked to photosystem assembly. Computational and Structural Biotechnology Journal 23, pp. 3967 - 3988 (2024)

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103.

Journal Article

Yokoyama, R.: Spatial sugar separation is key to how fast you get old. Plant Physiology 196 (4), pp. 2269 - 2270 (2024)

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104.

Journal Article

Bortolami, G.; de Werk, T.; Larter, M.; Thonglim, A.; Mueller-Roeber, B.; Balazadeh, S.; Lens, F.: Integrating gene expression analysis and ecophysiological responses to water deficit in leaves of tomato plants. Scientific Reports 14, 29024 (2024)

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105.

Journal Article

Dziasek, K.; Santos-González, J.; Wang, K.; Qiu, Y.; Zhu, J.; Rigola, D.; Nijbroek, K.; Köhler, C.: Dosage-sensitive maternal siRNAs determine hybridization success in Capsella. Nature Plants 10, pp. 1969 - 1983 (2024)

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106.

Journal Article

Farag, M.; Baky, M.; Kuehnhold, H.; Kriege, E.; Kunzmann, A.; Alseekh, S.; Al-Hammady, M.; Ezz, S.; Fernie, A. R.; Westphal, H. et al.; Stuhr, M.: Effects of thermal and UV stress on the polar and non-polar metabolome of photosymbiotic jellyfish and sea anemones. Marine Pollution Bulletin 208, 116983 (2024)

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107.

Journal Article

Fichtner, F.; Humphreys, J.L.; Barbier, F.F.; Feil, R.; Westhoff, P.; Moseler, A.; Lunn, J.E.; Smith, S.M.; Beveridge, C.A.: Strigolactone signalling inhibits trehalose 6-phosphate signalling independently of BRC1 to suppress shoot branching. New Phytologist 244 (3), pp. 900 - 913 (2024)

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108.

Journal Article

Huang, X.; He, Y.; Zhang, K.; Shi, Y.; Zhao, H.; Lai, D.; Lin, H.; Wang, X.; Yang, Z.; Xiao, Y. et al.; Li, W.; Ouyang, Y.; Woo, S.H.; Quinet, M.; Georgiev, M.I.; Fernie, A. R.; Liu, X.; Zhou, M.: Evolution and Domestication of a Novel Biosynthetic Gene Cluster Contributing to the Flavonoid Metabolism and High-Altitude Adaptability of Plants in the Fagopyrum Genus. Advanced Science 11 (43), 2403603 (2024)

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109.

Journal Article

Kazakov, P.; Alseekh, S.; Ivanova, V.; Gechev, T.: Biostimulant-Based Molecular Priming Improves Crop Quality and Enhances Yield of Raspberry and Strawberry Fruits. Metabolites 14 (11), 594 (2024)

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110.

Journal Article

Lázaro-Gimeno, D.; Ferrari, C.; Delhomme, N.; Johansson, M.; Sjölander, J.; Singh, R. K.; Mutwil, M.; Eriksson, M. E.: The circadian clock participates in seasonal growth in Norway spruce (Picea abies). Tree Physiology 44 (11), tpae139 (2024)

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111.

Journal Article

Liu, F.; Fernie, A. R.; Zhang, Y.: Can a nitrogen-fixing organelle be engineered within plants? Trends in Plant Science 29 (11), pp. 1168 - 1171 (2024)

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112.

Journal Article

Peng, H.: In the Spotlight: Journey from a Single Cell to a Flourishing Forest. Physiologia Plantarum 176 (6), e14609 (2024)

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113.

Journal Article

Razaghi-Moghadam, Z.; Soleymani Babadi, F.; Nikoloski, Z.: Harnessing the optimization of enzyme catalytic rates in engineering of metabolic phenotypes. PLOS Computational Biology 20 (11), e1012576 (2024)

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114.

Journal Article

Schulz-Mirbach, H.; Wichmann, P.; Satanowski, A.; Meusel, H.; Wu, T.; Nattermann, M.; Burgener, S.; Paczia, N.; Bar-Even, A.; Erb, T. J.: New-to-nature CO2-dependent acetyl-CoA assimilation enabled by an engineered B12-dependent acyl-CoA mutase. Nature Communications 15, 10235 (2024)

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115.

Journal Article

Wang, Y.; Strauss, S.; Smith, R. S.; Sampathkumar, A.: Actin-mediated avoidance of tricellular junction influences global topology at the Arabidopsis shoot apical meristem. Cell Reports 43 (11), 114844 (2024)

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116.

Journal Article

Wojciechowska, I.; Mukherjee, T.; Knox-Brown, P.; Hu, X.; Khosla, A.; Subedi, B.; Ahmad, B.; Mathews, G.L.; Panagakis, A.A.; Thompson, K.A. et al.; Peery, S.T.; Szlachetko, J.; Thalhammer, A.; Hincha, D. K.; Skirycz, A.; Schrick, K.: Arabidopsis PROTODERMAL FACTOR2 binds lysophosphatidylcholines and transcriptionally regulates phospholipid metabolism. New Phytologist 244 (4), pp. 1498 - 1518 (2024)

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117.

Journal Article

Che, Y.; Ding, Z.; Shen, C.; Fernie, A. R.; Tang, X.; Yao, Y.; Liu, J.; Wang, Y.; Li, R.; Guo, J.: Physiological and Microstructure Analysis Reveals the Mechanism by Which Formic Acid Delays Postharvest Physiological Deterioration of Cassava. Antioxidants: open access journal 13 (10), 1245 (2024)

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118.

Journal Article

Ebert, A.; Alseekh, S.; D´Andrea, L.; Roessner, U.; Bock, R.; Kopka, J.: Detailed Profiling of 17-Hydroxygeranyllinalool Diterpene Glycosides from Nicotiana Species Reveals Complex Reaction Networks of Conjugation Isomers. Metabolites 14 (10), 562 (2024)

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119.

Journal Article

El-Shiekh, R. A.; Elshimy, R.; Mandour, A. A.; Kassem, H. A. H.; Khaleel, A. E.; Alseekh, S.; Fernie, A. R.; Salem, M. A.: Phytochemical characterisation of leaves and stems of Murraya koenigii (L.) Sprengel and Murraya paniculata (L.) Jack and their antibacterial activity against multidrug-resistant Acinetobacter baumannii bacterial infection. International journal of food science & technology 59 (10), pp. 7998 - 8010 (2024)

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120.

Journal Article

Göbel, A.-M.; Zhou, S.; Wang, Z.; Tzourtzou, S.; Himmelbach, A.; Zheng, S.; Pradillo, M.; Liu, C.; Jiang, H.: Mutations of PDS5 genes enhance TAD-like domain formation Arabidopsis thaliana. Nature Communications 15 (1), 9308 (2024)

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121.

Journal Article

Lima, R. B.; Pankaj, R.; Ehlert, S. T.; Finger, P.; Fröhlich, A.; Bayle, V.; Landrein, B.; Sampathkumar, A.; Figueiredo, D.D.: Seed coat-derived brassinosteroid signaling regulates endosperm development. Nature Communications 15 (1), 9352 (2024)

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122.

Journal Article

Liu, Q.; Zhou, Y.; Flores Castellanos, J.; Fettke, J.: The maltose-related starch degradation pathway promotes the formation of large and spherical transitory starch granules. The Plant Journal 120 (2), pp. 712 - 728 (2024)

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123.

Journal Article

Naake, T.; D'Auria, J.; Fernie, A. R.; Scossa, F.: Phylogenomic and synteny analysis of BAHD and SCP/SCPL gene families reveal their evolutionary histories in plant specialized metabolism. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 379 (1914), 20230349 (2024)

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124.

Journal Article

Qiu, Y.; Li, Z.; Köhler, C.: Ancestral duplication of MADS-box genes in land plants empowered the functional divergence between sporophytes and gametophytes. New Phytologist 244 (2), pp. 358 - 363 (2024)

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125.

Journal Article

Rolo, D.; Sandoval-Ibanez, O.; Thiele, W.; Schöttler, M. A.; Gerlach, I.; Zoschke, R.; Schwartzmann, J.; Meyer, E. H.; Bock, R.: CO-EXPRESSED WITH PSI ASSEMBLY1 (CEPA1) is a photosystem I assembly factor in Arabidopsis. The Plant Cell 36 (10), pp. 4179 - 4211 (2024)

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126.

Journal Article

Rüscher, D.; Vasina, V. V.; Knoblauch, J.; Bellin, L.; Pommerrenig, B.; Alseekh, S.; Fernie, A. R.; Neuhaus, H. E.; Knoblauch, M.; Sonnewald, U. et al.; Zierer, W.: Symplasmic phloem loading and subcellular transport in storage roots are key factors for carbon allocation in cassava. Plant Physiology 196 (2), pp. 1322 - 1339 (2024)

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127.

Journal Article

Saß, A.; Schneider, R.: Novel molecular insights into the machinery driving secondary cell wall synthesis and patterning. Current Opinion in Plant Biology 81, 102614 (2024)

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128.

Journal Article

Tóth, D.; Tengölics, R.; Aarabi, F.; Karlsson, A.; Vidal-Meireles, A.; Kovács, L.; Kuntam, S.; Körmöczi, T.; Fernie, A. R.; Hudson, E. P. et al.; Papp, B.; Tóth, S. Z.: Chloroplastic ascorbate modifies plant metabolism and may act as a metabolite signal regardless of oxidative stress. Plant Physiology 196 (2), pp. 1691 - 1711 (2024)

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129.

Journal Article

Tran, T. C.; Mähl, K.; Kappel, C.; Dakhiya, Y.; Sampathkumar, A.; Sicard, A.; Lenhard, M.: Altered interactions between cis-regulatory elements partially resolve BLADE-ON-PETIOLE genetic redundancy in Capsella rubella. The Plant Cell 36 (10), pp. 4637 - 4657 (2024)

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130.

Journal Article

Avidan, O.; Martins, M. C. M.; Feil, R.; Lohse, M.; Giorgi, F. M.; Schlereth, A.; Lunn, J. E.; Stitt, M.: Direct and indirect responses of the Arabidopsis transcriptome to an induced increase in trehalose 6-phosphate. Plant Physiology 196 (1), pp. 409 - 431 (2024)

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131.

Journal Article

Dorrell, R. G.; Zhang, Y.; Liang, Y.; Gueguen, N.; Nonoyama, T.; Croteau, D.; Penot, M.; Adiba, S.; Bailleul, B.; Gros, V. et al.; Karlusich, P.; José, J.; Zweig, N.; Fernie, A. R.; Jouhet, J.; Maréchal, E.; Bowler, C.: Complementary environmental analysis and functional characterization of lower glycolysis-gluconeogenesis in the diatom plastid. The Plant Cell 36 (9), pp. 3584 - 3610 (2024)

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132.

Journal Article

Fu, C.-C.; Huang, B.-X.; Wang, S.-S.; Song, Y.-C.; Metok, D.; Tan, Y.-X.; Fan, T.-P.; Fernie, A. R.; Zargar, M.; Wang, Y. et al.; Chen, M.-X.; Yu, L.-W.; Zhu, F.-Y.: Deciphering the roles of bacterial and fungal communities in the formation and quality of agarwood. Stress Biology 4, 40 (2024)

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133.

Journal Article

Habibpour , M.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Machine learning of metabolite-protein interactions from model-derived metabolic phenotypes. NAR: genomics and bioinformatics 6 (3), lqae114 (2024)

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134.

Journal Article

Lopes, F. L.; Formosa-Jordan, P.; Malivert, A.; Margalha, L.; Confraria, A.; Feil, R.; Lunn, J. E.; Jönsson, H.; Landrein, B.; Baena-González, E.: Sugar signaling modulates SHOOT MERISTEMLESS expression and meristem function in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 121 (37), e2408699121 (2024)

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135.

Journal Article

Muino, J. M.; Ruwe, H.; Qu, Y.; Maschmann, S.; Chen, W.; Zoschke, R.; Ohler, U.; Kaufmann, K.; Schmitz-Linneweber, C.: MatK impacts differential chloroplast translation by limiting spliced tRNA-K(UUU) abundance. The Plant Journal 119 (6), pp. 2737 - 2752 (2024)

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136.

Journal Article

Pholo-Tait, M.; Le Maitre, N.C.; Lloyd, J.R.; Kossmann, J.; Hills, P.N.; Schulze, W.X.; Alseekh, S.; Valentine, A.J.: Proteome profiling of lumichrome-treated Arabidopsis thaliana suggests that various regulatory mechanisms mediate enhanced photosynthesis and plant growth. South African Journal of Botany 172, pp. 515 - 528 (2024)

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137.

Journal Article

Pulido-Capiz, A.; Chimal-Vega, B.; Avila-Barrientos, L. P.; Campos-Valenzuela, A.; Díaz-Molina, R.; Muñiz-Salazar, R.; Galindo-Hernández, O.; García-González, V.: Auraptene Boosts the Efficacy of the Tamoxifen Metabolites Endoxifen and 4-OH-Tamoxifen in a Chemoresistant ER plus Breast Cancer Model. Pharmaceutics 16 (9), 1179 (2024)

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138.

Journal Article

Qian, L.; Yan, B.; Zhou, J.; Fan, Y.; Tao, M.; Zhu, W.; Wang, C.; Tu, Q.; Tian, Y.; He, Q. et al.; Wu, K.; Niu, M.; Yan, Q.; Nikoloski, Z.; Liu, G.; Yu, X.; He, Z.: Comprehensive profiles of sulfur cycling microbial communities along a mangrove sediment depth. Science of the Total Environment 944, 173961 (2024)

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139.

Journal Article

Ting, M. K. Y.; Gao, Y.; Barahimipour, R.; Ghandour, R.; Liu, J.; Martinez-Seidel, F.; Smirnova, J.; Gotsmann, V. L.; Fischer, A.; Haydon, M. J. et al.; Willmund, F.; Zoschke, R.: Optimization of ribosome profiling in plants including structural analysis of rRNA fragments. Plant Methods 20 (1), 143 (2024)

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140.

Journal Article

Van Gelder, K.; Lindner, S. N.; Hanson, A.D.; Zhou, J.: Strangers in a foreign land: ‘Yeastizing’ plant enzymes. Microbial Biotechnology 17 (9), e14525 (2024)

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141.

Journal Article

von Steimker, J.; Tripodi, P.; Wendenburg, R.; Tringovska, I.; Nankar, A. N.; Stoeva, V.; Pasev, G.; Klemmer, A.; Todorova, V.; Bulut, M. et al.; Tikunov, Y.; Bovy, A.; Gechev, T.; Kostova, D.; Fernie, A. R.; Alseekh, S.: The genetic architecture of the pepper metabolome and the biosynthesis of its signature capsianoside metabolites. Current Biology 34 (18), pp. 4209 - 4223 (2024)

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142.

Journal Article

Badoni, S.; Pasion-Uy, E. A.; Kor, S.; Kim, S.-R.; Tiozon, R. J. N.; Misra, G.; Buenafe, R. J. Q.; Labarga, L. M.; Ramos-Castrosanto, A. R.; Pratap, V. et al.; Slamet-Loedin, I.; von Steimker, J.; Alseekh, S.; Fernie, A. R.; Kohli, A.; Khush, G. S.; Sreenivasulu, N.: Multiomics of a rice population identifies genes and genomic regions that bestow low glycemic index and high protein content. Proceedings of the National Academy of Sciences of the United States of America 121 (36), e2410598121 (2024)

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143.

Journal Article

Boix, M.; Garcia-Rodriguez, A.; Castillo, L.; Miró, B.; Hamilton, F.; Tolak, S.; Pérez, A.; Monte Bello, C.C.; Caldana, C.; Henriques, R.: 40S Ribosomal Protein S6 Kinase Integrates Daylength Perception and Growth Regulation in Arabidopsis thaliana. Plant Physiology 195 (4), pp. 3039 - 3052 (2024)

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144.

Journal Article

Gutschker, S.; Ruescher, D.; Rabbi, I.Y.; Rosado-Souza, L.; Pommerrenig, B.; Pauly, M.; Robertz, S.; van Doorn, A.M.; Schlereth, A.; Neuhaus, H.E. et al.; Fernie, A. R.; Reinert, S.; Sonnewald, U.; Zierer, W.: Carbon usage in yellow-fleshed Manihot esculenta storage roots shifts from starch biosynthesis to cell wall and raffinose biosynthesis via the myo-inositol pathway. The Plant Journal 119 (4), pp. 2045 - 2062 (2024)

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145.

Journal Article

Hayashi, K.; Fernie, A. R.: A neat wheat trick to hide genes from selection. Trends in Plant Science 29 (8), pp. 837 - 838 (2024)

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146.

Journal Article

Legen, J.; Lenzen, B.; Kachariya, N.; Feltgen, S.; Gao, Y.; Mergenthal, S.; Weber, W.; Klotzsch, E.; Zoschke, R.; Sattler, M. et al.; Schmitz-Linneweber, C.: A prion-like domain is required for phase separation and chloroplast RNA processing during cold acclimation in Arabidopsis. The Plant Cell 36 (8), pp. 2851 - 2872 (2024)

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147.

Journal Article

Liu, Y.; Li, H.; Liu, J.; Wang, Y.; Jiang, C.; Zhou, Z.; Zhuo, L.; Li, W.; Fernie, A. R.; Jackson, D. et al.; Yan, J.; Luo, Y.: The additive function of YIGE2 and YIGE1 in regulating maize ear length. The Plant Journal 119 (3), pp. 1327 - 1335 (2024)

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148.

Journal Article

Moshelion, M.; Dietz, K.-J.; Dodd, I. C.; Muller, B.; Lunn, J. E.: Guidelines for designing and interpreting drought experiments in controlled conditions. Journal of Experimental Botany 75 (16), pp. 4671 - 4679 (2024)

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149.

Journal Article

Olivieri, P.; Zupok, A.; Yildiz, T.; Oltmanns, J.; Lehmann, A.; Sokolowska, E.; Skirycz, A.; Schünemann, V.; Leimkühler, S.: TusA influences Fe-S cluster assembly and iron homeostasis in E. coli by reducing the translation efficiency of Fur. Microbiology Spectrum 12 (8), e00556-24 (2024)

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150.

Journal Article

Rahimi-Majd, M.; Leverett, A.; Neumann, A.; Kromdijk, J.; Nikoloski, Z.: Nonlinear models based on leaf architecture traits explain the variability of mesophyll conductance across plant species. Plant, Cell and Environment 47 (12), pp. 5158 - 5171 (2024)

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