Publications of T. Tohge

Sade, D., Shriki, O., Cuadros-Inostroza, A. C., Tohge, T., Semel, Y., Haviv, Y., Willmitzer, L., Fernie, A. R., Czosnek, H. & Brotman, Y. Comparative metabolomics and transcriptomics of plant response to Tomato yellow leaf curl virus infection in resistant and susceptible tomato cultivars. Metabolomics 11, 81–97 (2015).

Tohge, T., Scossa, F. & Fernie, A. R. Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation. Plant Physiology 169, 1499–1511 (2015).

Tohge, T., Zhang, Y., Peterek, S., Matros, A., Rallapalli, G., Tandron, Y. A., Butelli, E., Kallam, K., Hertkorn, N., Mock, H.-P., Martin, C. & Fernie, A. R. Ectopic expression of snapdragon transcription factors facilitates the identification of genes encoding enzymes of anthocyanin decoration in tomato. The Plant Journal 83, 686–704 (2015).

Wang, T., Tohge, T., Ivakov, A., Mueller-Roeber, B., Fernie, A. R., Mutwil, M., Schippers, J. H. M. & Persson, S. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiology 169, 1027–1041 (2015).

Zhang, Y., Butelli, E., Alseekh, S., Tohge, T., Rallapalli, G., Luo, J., Kawar, P. G., Hill, L., Santino, A., Fernie, A. R. & Martin, C. Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato. Nature communications 6, (2015).

Bolger, A. M., Scossa, F., Bolger, A. M., Lanz, C., Maumus, F., Tohge, T., Quesneville, H., Alseekh, S., Sorensen, I., Lichtenstein, G., Fich, E. A., Conte, M., Keller, H., Schneeberger, K., Schwacke, R., Ofner, I., Vrebalov, J., Xu, Y., Osorio, S., Aflitos, S. A., Schijlen, E., Jimenez-Gomez, J. M., Ryngajllo, M., Kimura, S., Kumar, R., Koenig, D., Headland, L. R., Maloof, J. N., Sinha, N., van Ham, R. C. H. J., Lankhorst, R. K., Mao, L., Vogel, A., Arsova, B., Panstruga, R., Fei, Z., Rose, J. K. C., Zamir, D., Carrari, F. F., Giovannoni, J. J., Weigel, D., Usadel, B. & Fernie, A. R. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46, 1034–1038 (2014).

Schwahn, K., de Souza, L. P., Fernie, A. R. & Tohge, T. Metabolomics-assisted refinement of the pathways of steroidal glycoalkaloid biosynthesis in the tomato clade. Journal of Integrative Plant Biology 56, 864–875 (2014).

Fukushima, A., Kusano, M., Mejia, R. F., Iwasa, M., Kobayashi, M., Hayashi, N., Watanabe-Takahashi, A., Narisawa, T., Tohge, T., Hur, M., Wurtele, E. S., Nikolau, B. J. & Saito, K. Metabolomic Characterization of Knockout Mutants in Arabidopsis: Development of a Metabolite Profiling Database for Knockout Mutants in Arabidopsis. Plant Physiology 165, 948–961 (2014).

Martins, S. C. V., Araújo, W. L., Tohge, T., Fernie, A. R. & DaMatta, F. M. In High-Light-Acclimated Coffee Plants the Metabolic Machinery Is Adjusted to Avoid Oxidative Stress Rather than to Benefit from Extra Light Enhancement in Photosynthetic Yield. PLoS One 9, (2014).

Araujo, W. L., Tohge, T., Nunes-Nesi, A., Obata, T. & Fernie, A. R. Analysis of Kinetic Labeling of Amino Acids and Organic Acids by GC-MS. Methods in molecular biology 1090, 107–119 (2014).

Florian, A., Nikoloski, Z., Sulpice, R., Timm, S., Araujo, W. L., Tohge, T., Bauwe, H. & Fernie, A. R. Analysis of Short-Term Metabolic Alterations in Arabidopsis Following Changes in the Prevailing Environmental Conditions. Molecular Plant 7, 893–911 (2014).

Florian, A., Timm, S., Nikoloski, Z., Tohge, T., Bauwe, H., Araujo, W. L. & Fernie, A. R. Analysis of metabolic alterations in Arabidopsis following changes in the carbon dioxide and oxygen partial pressures. Journal of Integrative Plant Biology 56, 941–959 (2014).

Heise, R., Arrivault, S., Szecowka, M., Tohge, T., Nunes-Nesi, A., Stitt, M., Nikoloski, Z. & Fernie, A. R. Flux profiling of photosynthetic carbon metabolism in intact plants. Nature Protocols 9, 1803–1824 (2014).

Hu, C., Shi, J., Quan, S., Cui, B., Kleessen, S., Nikoloski, Z., Tohge, T., Alexander, D., Guo, L., Lin, H., Wang, J., Cui, X., Rao, J., Luo, Q., Zhao, X., Fernie, A. R. & Zhang, D. Metabolic variation between japonica and indica rice cultivars as revealed by non-targeted metabolomics. Scientific Reports 4, (2014).

Klie, S., Osorio, S., Tohge, T., Drincovich, M. F., Fait, A., Giovannoni, J. J., Fernie, A. R. & Nikoloski, Z. Conserved Changes in the Dynamics of Metabolic Processes during Fruit Development and Ripening across Species. Plant Physiology 164, 55–68 (2014).

Lohse, M., Nagel, A., Herter, T., May, P., Schroda, M., Zrenner, R., Tohge, T., Fernie, A. R., Stitt, M. & Usadel, B. Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data. Plant Cell Environment 37, 1250–1258 (2014).

Ruprecht, C., Tohge, T., Fernie, A. R., Mortimer, C. L., Kozlo, A., Fraser, P. D., Funke, N., Cesarino, I., Vanholme, R., Boerjan, W., Morreel, K., Burgert, I., Gierlinger, N., Bulone, V., Schneider, V., Stockero, A., Navarro, J. P., Pudel, F., Tambuyser, B., Hygate, J., Bumstead, J., Notley, L. & Persson, S. Transcript and Metabolite Profiling for the Evaluation of Tobacco Tree and Poplar as Feedstock for the Bio-based Industry. Journal of visualized experiments: JoVE (2014). doi:10.3791/51393

Tohge, T., de Souza, L. P. & Fernie, A. R. Genome‐enabled plant metabolomics. Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences 966, 7–20 (2014).

Tohge, T., Obata, T. & Fernie, A. R. Biosynthesis of the Essential Respiratory Cofactor Ubiquinone from Phenylalanine in Plants. Molecular Plant 7, 1403–1405 (2014).

Wang, L., Czedik-Eysenberg, A., Mertz, R. A., Si, Y., Tohge, T., Nunes-Nesi, A., Arrivault, S., Dedow, L. K., Bryant, D. W., Zhou, W., Xu, J., Weissmann, S., Studer, A., Li, P., Zhang, C., LaRue, T., Shao, Y., Ding, Z., Sun, Q., Patel, R. V., Turgeon, R., Zhu, X., Provart, N. J., Mockler, T. C., Fernie, A. R., Stitt, M., Liu, P. & Brutnell, T. P. Comparative analyses of C-4 and C-3 photosynthesis in developing leaves of maize and rice. Nature biotechnology 32, 1158–1165 (2014).