Publications of S. Klie

Journal Article (22)

1.
Journal Article
Cookson, S. J., Yadav, U. P., Klie, S., Morcuende, R., Usadel, B., Lunn, J. E. & Stitt, M. Temporal kinetics of the transcriptional response to carbon depletion and sucrose readdition in Arabidopsis seedlings. Plant, Cell and Environment 39, 768–786 (2016).
2.
Journal Article
Ruprecht, C., Mendrinna, A., Tohge, T., Sampathkumar, A., Klie, S., Fernie, A. R., Nikoloski, Z., Persson, S. & Mutwil, M. FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants. Plant Physiology 170, 1878–1894 (2016).
3.
Journal Article
Bordag, N., Klie, S., Juerchott, K., Vierheller, J., Schiewe, H., Albrecht, V., Tonn, J.-C., Schwartz, C., Schichor, C. & Selbig, J. Glucocorticoid (dexamethasone)-induced metabolome changes in healthy males suggest prediction of response and side effects. Scientific Reports 5, (2015).
4.
Journal Article
Bellucci, E., Bitocchi, E., Ferrarini, A., Benazzo, A., Biagetti, E., Klie, S., Minio, A., Rau, D., Rodriguez, M., Panziera, A., Venturini, L., Attene, G., Albertini, E., Jackson, S. A., Nanni, L., Fernie, A. R., Nikoloski, Z., Bertorelle, G., Delledonne, M. & Papa, R. Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. The Plant Cell 26, 1901–1912 (2014).
5.
Journal Article
Guo, K., Zou, W., Feng, Y., Zhang, M., Zhang, J., Tu, F., Xie, G., Wang, L., Wang, Y., Klie, S., Persson, S. & Peng, L. An integrated genomic and metabolomic framework for cell wall biology in rice. BMC Genomics 15, (2014).
6.
Journal Article
Kleessen, S., Klie, S. & Nikoloski, Z. Concurrent Conditional Clustering of Multiple Networks: COCONETS. PLoS One 9, (2014).
7.
Journal Article
Klie, S., Nikoloski, Z. & Selbig, J. Biological Cluster Evaluation for Gene Function Prediction. Journal of Computational Biology 21, 428–445 (2014).
8.
Journal Article
Klie, S., Osorio, S., Tohge, T., Drincovich, M. F., Fait, A., Giovannoni, J. J., Fernie, A. R. & Nikoloski, Z. Conserved Changes in the Dynamics of Metabolic Processes during Fruit Development and Ripening across Species. Plant Physiology 164, 55–68 (2014).
9.
Journal Article
Rajasundaram, D., Selbig, J., Persson, S. & Klie, S. Co-ordination and divergence of cell-specific transcription and translation of genes in arabidopsis root cells. Annals of Botany 114, 1109–23 (2014).
10.
Journal Article
Kleessen, S., Klie, S. & Nikoloski, Z. Data Integration through Proximity-Based Networks Provides Biological Principles of Organization across Scales. The Plant Cell 25, 1917–1927 (2013).
11.
Journal Article
Omranian, N., Klie, S., Mueller-Roeber, B. & Nikoloski, Z. Network-Based Segmentation of Biological Multivariate Time Series. PLoS One 8, e62974 (2013).
12.
Journal Article
Hubberten, H.-M., Klie, S., Caldana, C., Degenkolbe, T., Willmitzer, L. & Hoefgen, R. An additional role of O-acetylserine as a sulphur status independent regulator during plant growth. Plant Journal 70, 666–677 (2012).
13.
Journal Article
Klie, S., Caldana, C. & Nikoloski, Z. Compromise of multiple time-resolved transcriptomics experiments identifies tightly regulated functions. Frontiers in Plant Science 3, 249 (2012).
14.
Journal Article
Klie, S., Mutwil, M., Persson, S. & Nikoloski, Z. Inferring gene functions through dissection of relevance networks: interleaving the intra- and inter-species views. Molecular BioSystems 8, 2233–2241 (2012).
15.
Journal Article
Klie, S. & Nikoloski, Z. The Choice between MapMan and Gene Ontology for Automated Gene Function Prediction in Plant Science. Frontiers in Genetics 3, 115 (2012).
16.
Journal Article
Caldana, C., Degenkolbe, T., Cuadros-Inostroza, A., Klie, S., Sulpice, R., Leisse, A., Steinhauser, D., Fernie, A. R., Willmitzer, L. & Hannah, M. A. High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions. The Plant Journal 67, 869–884 (2011).
17.
Journal Article
Klie, S., Krueger, S., Krall, L., Giavalisco, P., Fluegge, U.-I., Willmitzer, L. & Steinhauser, D. Analysis of the compartmentalized metabolome – a validation of the non-aqueous fractionation technique. Frontiers in Plant Science 2, 55 (2011).
18.
Journal Article
Mutwil, M., Klie, S., Tohge, T., Giorgi, F. M., Wilkins, O., Campbell, M. M., Fernie, A. R., Usadel, B., Nikoloski, Z. & Persson, S. PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 23, 895–910 (2011).
19.
Journal Article
Nikoloski, Z., Grimbs, S., Klie, S. & Selbig, J. Complexity of automated gene annotation. Biosystems 104, 1–8 (2011).
20.
Journal Article
Jozefczuk, S., Klie, S., Catchpole, G., Szymanski, J., Cuadros-Inostroza, A., Steinhauser, D., Selbig, J. & Willmitzer, L. Metabolomic and transcriptomic stress response of Escherichia coli. Molecular Systems Biology 6, 364 (2010).
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