Publications of A. M. Bolger

Bolger, A. M., Scossa, F., Bolger, A. M., Lanz, C., Maumus, F., Tohge, T., Quesneville, H., Alseekh, S., Sorensen, I., Lichtenstein, G., Fich, E. A., Conte, M., Keller, H., Schneeberger, K., Schwacke, R., Ofner, I., Vrebalov, J., Xu, Y., Osorio, S., Aflitos, S. A., Schijlen, E., Jimenez-Gomez, J. M., Ryngajllo, M., Kimura, S., Kumar, R., Koenig, D., Headland, L. R., Maloof, J. N., Sinha, N., van Ham, R. C. H. J., Lankhorst, R. K., Mao, L., Vogel, A., Arsova, B., Panstruga, R., Fei, Z., Rose, J. K. C., Zamir, D., Carrari, F. F., Giovannoni, J. J., Weigel, D., Usadel, B. & Fernie, A. R. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46, 1034–1038 (2014).

Bolger, A. M., Lohse, M. & Usadel, B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30, 2114–2120 (2014).

Matsuba, Y., Nguyen, T. T. H., Wiegert, K., Falar, V., Gonzales-Vigil, E., Leong, B., Schaefer, P., Kudrna, D., Wing, R. A., Bolger, A. M., Usadel, B., Tissier, A., Fernie, A. R., Barry, C. S. & Pichersky, E. Evolution of a Complex Locus for Terpene Biosynthesis in Solanum. The Plant Cell 25, 2022–2036 (2013).

Koenig, D., Jimenez-Gomez, J. M., Kimura, S., Fulop, D., Chitwood, D. H., Headland, L. R., Kumar, R., Covington, M. F., Devisetty, U. K., Tat, A. V., Tohge, T., Bolger, A. M., Schneeberger, K., Ossowski, S., Lanz, C., Xiong, G., Taylor-Teeples, M., Brady, S. M., Pauly, M., Weigel, D., Usadel, B., Fernie, A. R., Peng, J., Sinha, N. R. & Maloof, J. N. Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences of the United States of America 110, E2655–E2662 (2013).

Lohse, M., Bolger, A. M., Nagel, A., Fernie, A. R., Lunn, J. E., Stitt, M. & Usadel, B. RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics. Nucleic Acids Research 40, W622–W627 (2012).

Nagel, A., Lohse, M., Bolger, A., Bolger, A. M., Stitt, M. & Usadel, B. Visualizing large, high-throughput datasets based on the cognitive representation of biological pathways. Human Vision and Electronic Imaging Xvi 7865, 78650h (2011).

Giorgi, F. M., Bolger, A. M., Lohse, M. & Usadel, B. Algorithm-driven Artifacts in median polish summarization of Microarray data. BMC Bioinformatics 11, 553 (2010).

Brotman, Y., Normantovich, M., Goldenberg, Z., Zvirin, Z., Kovalski, I., Stovbun, N., Doniger, T., Bolger, A. M., Troadec, C., Bendahmane, A., Cohen, R., Katzir, N., Pitrat, M., Dogimont, C. & Perl-Treves, R. Dual Resistance of Melon to Fusarium oxysporum Races 0 and 2 and to Papaya ring-spot virus is Controlled by a Pair of Head-to-Head-Oriented NB-LRR Genes of Unusual Architecture. (2013). doi:10.1093/mp/sss121