Publications of A. Fischer

Journal Article (19)

Journal Article
Vyse, K., Fischer, A., Zajancauskaite, G., Erban, A., Kopka, J., Balazadeh, S. & Zuther, E. Co-expression networks of deacclimation-impaired transcription factor mutants identified complex regulation of the cold stress release response. Physiologia Plantarum 174, (2022).
Journal Article
Kariñho-Betancourt, E., Carlson, D., Hollister, J., Fischer, A., Greiner, S. & Johnson, M. T. J. The evolution of multi-gene families and metabolic pathways in the evening primroses (Oenothera: Onagraceae): A comparative transcriptomics approach. PLoS One 17, (2022).
Journal Article
Fischer, A., Dotzek, J., Walther, D. & Greiner, S. Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization. NAR: genomics and bioinformatics 4, (2022).
Journal Article
Forner, J., Kleinschmidt, D., Meyer, E. H., Fischer, A., Morbitzer, R., Lahaye, T., Schöttler, M. A. & Bock, R. Targeted introduction of heritable point mutations into the plant mitochondrial genome. Nature Plants 8, 245–256 (2022).
Journal Article
Zupok, A., Kozul, D., Schöttler, M. A., Niehörster, J., Garbsch, F., Liere, K., Fischer, A., Zoschke, R., Malinova, I., Bock, R. & Greiner, S. A photosynthesis operon in the chloroplast genome drives speciation in evening primroses. The Plant Cell 33, 2583–2601 (2021).
Journal Article
Claassens, N. J., Scarinci, G., Fischer, A., Flamholz, A. I., Newell, W., Frielingsdorf, S., Lenz, O. & Bar-Even, A. Phosphoglycolate salvage in a chemolithoautotroph using the Calvin cycle. Proceedings of the National Academy of Sciences of the United States of America 117, 22452–22461 (2020).
Journal Article
Schaarschmidt, S., Fischer, A., Lawas, L. M. F., Alam, R., Septiningsih, E. M., Bailey-Serres, J., Jagadish, S. V. K., Huettel, B., Hincha, D. K. & Zuther, E. Utilizing PacBio Iso-Seq for Novel Transcript and Gene Discovery of Abiotic Stress Responses in Oryza sativa L. International Journal of Molecular Sciences 21, (2020).
Journal Article
Schaarschmidt, S., Fischer, A., Zuther, E. & Hincha, D. K. Evaluation of seven different rna-seq alignment tools based on experimental data from the model plant arabidopsis thaliana. International Journal of Molecular Sciences 21, (2020).
Journal Article
Sujeeth, N., Mehterov, N., Gupta, S., Qureshi, M. K., Fischer, A., Proost, S., Omidbakhshfard, M. A., Obata, T., Benina, M., Staykov, N., Balazadeh, S., Walther, D., Fernie, A. R., Mueller-Roeber, B., Hille, J. & Gechev, T. S. A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. Cellular and Molecular Life Sciences 77, 705–718 (2020).
Journal Article
Whitcomb, S. J., Rakpenthai, A., Brückner, F., Fischer, A., Parmar, S., Erban, A., Kopka, J., Hawkesford, M. J. & Hoefgen, R. Cysteine and Methionine Biosynthetic Enzymes Have Distinct Effects on Seed Nutritional Quality and on Molecular Phenotypes Associated With Accumulation of a Methionine-Rich Seed Storage Protein in Rice. Frontiers in Plant Science 11, (2020).
Journal Article
Armarego-Marriott, T., Kowalewska, L., Burgos, A., Fischer, A., Thiele, W., Erban, A., Strand, D., Kahlau, S., Hertle, A. P., Kopka, J., Walther, D., Reich, Z., Schöttler, M. A. & Bock, R. Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves. Plant Physiology 180, 654–681 (2019).
Journal Article
Sobanski, J., Giavalisco, P., Fischer, A., Kreiner, J. M., Walther, D., Schöttler, M. A., Pellizzer, T., Golczyk, H., Obata, T., Bock, R., Sears, B. B. & Greiner, S. Chloroplast competition is controlled by lipid biosynthesis in evening primroses. Proceedings of the National Academy of Sciences of the United States of America 116, 5665–5674 (2019).
Journal Article
Zuther, E., Schaarschmidt, S., Fischer, A., Erban, A., Pagter, M., Mubeen, U., Giavalisco, P., Kopka, J., Sprenger, H. & Hincha, D. K. Molecular signatures associated with increased freezing tolerance due to low temperature memory in Arabidopsis. Plant, Cell and Environment 42, 854–873 (2019).
Journal Article
Schwachtje, J., Fischer, A., Erban, A. & Kopka, J. Primed primary metabolism in systemic leaves: a functional systems analysis. Scientific Reports 8, (2018).
Journal Article
Ploetner, B., Nurmi, M., Fischer, A., Watanabe, M., Schneeberger, K., Holm, S., Vaid, N., Schöttler, M. A., Walther, D., Hoefgen, R., Weigel, D. & Laitinen, R. Chlorosis caused by two recessively interacting genes reveals a role of RNA helicase in hybrid breakdown in Arabidopsis thaliana. The Plant Journal 91, 251–262 (2017).
Journal Article
Swiadek, M., Proost, S., Sieh, D., Yu, J., Todesco, M., Jorzig, C., Cubillos, A., Plötner, B., Nikoloski, Z., Chae, E., Giavalisco, P., Fischer, A., Schröder, F., Kim, S.-T., Weigel, D. & Laitinen, R. Novel allelic variants in ACD6 cause hybrid necrosis in local collection of Arabidopsis thaliana. New Phytologist 213, 900–915 (2017).
Journal Article
Tillich, M., Lehwark, P., Pellizzer, T., Ulbricht-Jones, E. S., Fischer, A., Bock, R. & Greiner, S. GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Research 45, W6–W11 (2017).
Journal Article
Sprenger, H., Kurowsky, C., Horn, R., Erban, A., Seddig, S., Rudack, K., Fischer, A., Walther, D., Zuther, E., Koehl, K. I., Hincha, D. K. & Kopka, J. The drought response of potato reference cultivars with contrasting tolerance. Plant Cell Environment 39, 2370–2389 (2016).
Journal Article
Zhou, W. B., Karcher, D., Fischer, A., Maximova, E., Walther, D. & Bock, R. Multiple RNA Processing Defects and Impaired Chloroplast Function in Plants Deficient in the Organellar Protein-Only RNase P Enzyme. PLoS One 10, e0120533–e0120533 (2015).

Meeting Abstract (1)

Meeting Abstract
Skeffington, A. W., Fischer, A., Gorka, M., Graf, A. & Scheffel, A. Identifying Proteins important for Coccolith formation in Emiliana huxleyi. in Phycologia 56, 173–174 (International Phycological Society, 2017).
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