Publications of S. Greiner

Journal Article (31)

1.
Journal Article
Fischer, A., Dotzek, J., Walther, D. & Greiner, S. Graph-based models of the Oenothera mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization. NAR: genomics and bioinformatics 4, (2022).
2.
Journal Article
Santangelo, J. S., Ness, R. W., Cohan, B., Fitzpatrick, C. R., Innes, S. G., Koch, S., Miles, L. S., Munim, S., Peres-Neto, P. R., Prashad, C., Tong, A. T., Aguirre, W. E., Akinwole, P. O., Alberti, M., Álvarez, J., Anderson, J. T., Anderson, J. J., Ando, Y., Andrew, N. R., Angeoletto, F., Anstett, D. N., Anstett, J., Aoki-Gonçalves, F., Arietta, A. Z. A., Arroyo, M. T. K., Austen, E. J., Baena-Díaz, F., Barker, C. A., Baylis, H. A., Beliz, J. M., Benitez-Mora, A., Bickford, D., Biedebach, G., Blackburn, G. S., Boehm, M. M. A., Bonser, S. P., Bonte, D., Bragger, J. R., Branquinho, C., Brans, K. I., Bresciano, J. C., Brom, P. D., Bucharova, A., Burt, B., Cahill, J. F., Campbell, K. D., Carlen, E. J., Carmona, D., Castellanos, M. C., Centenaro, G., Chalen, I., Chaves, J. A., Chávez-Pesqueira, M., Chen, X.-Y., Chilton, A. M., Chomiak, K. M., Cisneros-Heredia, D. F., Cisse, I. K., Classen, A. T., Comerford, M. S., Fradinger, C. C., Corney, H., Crawford, A. J., Crawford, K. M., Dahirel, M., David, S., De Haan, R., Deacon, N. J., Dean, C., Del-Val, E., Deligiannis, E. K., Denney, D., Dettlaff, M. A., DiLeo, M. F., Ding, Y.-Y., Domínguez-López, M. E., Dominoni, D. M., Draud, S. L., Dyson, K., Ellers, J., Espinosa, C. I., Essi, L., Falahati-Anbaran, M., Falcão, J. C. F., Fargo, H. T., Fellowes, M. D. E., Fitzpatrick, R. M., Flaherty, L. E., Flood, P. J., Flores, M. F., Fornoni, J., Foster, A. G., Frost, C. J., Fuentes, T. L., Fulkerson, J. R., Gagnon, E., Garbsch, F., Garroway, C. J., Gerstein, A. C., Giasson, M. M., Girdler, E. B., Gkelis, S., Godsoe, W., Golemiec, A. M., Golemiec, M., González-Lagos, C., Gorton, A. J., Gotanda, K. M., Granath, G., Greiner, S., Griffiths, J. S., Grilo, F., Gundel, P. E., Hamilton, B., Hardin, J. M., He, T., Heard, S. B., Henriques, A. F., Hernández-Poveda, M., Hetherington-Rauth, M. C., Hill, S. J., Hochuli, D. F., Hodgins, K. A., Hood, G. R., Hopkins, G. R., Hovanes, K. A., Howard, A. R., Hubbard, S. C., Ibarra-Cerdeña, C. N., Iñiguez-Armijos, C., Jara-Arancio, P., Jarrett, B. J. M., Jeannot, M., Jiménez-Lobato, V., Johnson, M., Johnson, O., Johnson, P. P., Johnson, R., Josephson, M. P., Jung, M. C., Just, M. G., Kahilainen, A., Kailing, O. S., Kariñho-Betancourt, E., Karousou, R., Kirn, L. A., Kirschbaum, A., Laine, A.-L., LaMontagne, J. M., Lampei, C., Lara, C., Larson, E. L., Lázaro-Lobo, A., Le, J. H., Leandro, D. S., Lee, C., Lei, Y., León, C. A., Lequerica Tamara, M. E., Levesque, D. C., Liao, W.-J., Ljubotina, M., Locke, H., Lockett, M. T., Longo, T. C., Lundholm, J. T., MacGillavry, T., Mackin, C. R., Mahmoud, A. R., Manju, I. A., Mariën, J., Martínez, D. N., Martínez-Bartolomé, M., Meineke, E. K., Mendoza-Arroyo, W., Merritt, T. J. S., Merritt, L. E. L., Migiani, G., Minor, E. S., Mitchell, N., Mohammadi Bazargani, M., Moles, A. T., Monk, J. D., Moore, C. M., Morales-Morales, P. A., Moyers, B. T., Muñoz-Rojas, M., Munshi-South, J., Murphy, S. M., Murúa, M. M., Neila, M., Nikolaidis, O., Njunjić, I., Nosko, P., Núñez-Farfán, J., Ohgushi, T., Olsen, K. M., Opedal, Ø. H., Ornelas, C., Parachnowitsch, A. L., Paratore, A. S., Parody-Merino, A. M., Paule, J., Paulo, O. S., Pena, J. C., Pfeiffer, V. W., Pinho, P., Piot, A., Porth, I. M., Poulos, N., Puentes, A., Qu, J., Quintero-Vallejo, E., Raciti, S. M., Raeymaekers, J. A. M., Raveala, K. M., Rennison, D. J., Ribeiro, M. C., Richardson, J. L., Rivas-Torres, G., Rivera, B. J., Roddy, A. B., Rodriguez-Muñoz, E., Román, J. R., Rossi, L. S., Rowntree, J. K., Ryan, T. J., Salinas, S., Sanders, N. J., Santiago-Rosario, L. Y., Savage, A. M., Scheepens, J. F., Schilthuizen, M., Schneider, A. C., Scholier, T., Scott, J. L., Shaheed, S. A., Shefferson, R. P., Shepard, C. A., Shykoff, J. A., Silveira, G., Smith, A. D., Solis-Gabriel, L., Soro, A., Spellman, K. V., Whitney, K. S., Starke-Ottich, I., Stephan, J. G., Stephens, J. D., Szulc, J., Szulkin, M., Tack, A. J. M., Tamburrino, Í., Tate, T. D., Tergemina, E., Theodorou, P., Thompson, K. A., Threlfall, C. G., Tinghitella, R. M., Toledo-Chelala, L., Tong, X., Uroy, L., Utsumi, S., Vandegehuchte, M. L., VanWallendael, A., Vidal, P. M., Wadgymar, S. M., Wang, A.-Y., Wang, N., Warbrick, M. L., Whitney, K. D., Wiesmeier, M., Wiles, J. T., Wu, J., Xirocostas, Z. A., Yan, Z., Yao, J., Yoder, J. B., Yoshida, O., Zhang, J., Zhao, Z., Ziter, C. D., Zuellig, M. P., Zufall, R. A., Zurita, J. E., Zytynska, S. E. & Johnson, M. T. J. Global urban environmental change drives adaptation in white clover. Science 375, 1275–1281 (2022).
3.
Journal Article
Zupok, A., Kozul, D., Schöttler, M. A., Niehörster, J., Garbsch, F., Liere, K., Fischer, A., Zoschke, R., Malinova, I., Bock, R. & Greiner, S. A photosynthesis operon in the chloroplast genome drives speciation in evening primroses. The Plant Cell 33, 2583–2601 (2021).
4.
Journal Article
Malinova, I., Zupok, A., Massouh, A., Schöttler, M. A., Meyer, E. H., Yaneva-Roder, L., Szymanski, W. G., Rößner, M., Ruf, S., Bock, R. & Greiner, S. Correction of Frameshift Mutations in the atpB Gene by Translational Recoding in Chloroplasts of Oenothera and Tobacco. The Plant Cell 33, 1682–1705 (2021).
5.
Journal Article
Greiner, S., Golczyk, H., Malinova, I., Pellizzer, T., Bock, R., Börner, T. & Herrmann, R. G. Chloroplast nucleoids are highly dynamic in ploidy, number, and structure during angiosperm leaf development. The Plant Journal 102, 730–746 (2020).
6.
Journal Article
Greiner, S., Lehwark, P. & Bock, R. OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes. Nucleic Acids Research 47, W59–W64 (2019).
7.
Journal Article
Bdolach, E., Prusty, M. R., Faigenboim-Doron, A., Filichkin, T., Helgerson, L., Schmid, K. J., Greiner, S. & Fridman, E. Thermal plasticity of the circadian clock is under nuclear and cytoplasmic control in wild barley. Plant, Cell and Environment 42, 3105–3120 (2019).
8.
Journal Article
Hollister, J. D., Greiner, S., Johnson, M. T. J. & Wright, S. I. Hybridization and a loss of sex shape genome-wide diversity and the origin of species in the evening primroses (Oenothera, Onagraceae). New Phytologist 224, 1372–1380 (2019).
9.
Journal Article
Leebens-Mack, J. H., Barker, M. S., Carpenter, E. J., Deyholos, M. K., Gitzendanner, M. A., Graham, S. W., Grosse, I., Li, Z., Melkonian, M., Mirarab, S., Porsch, M., Quint, M., Rensing, S. A., Soltis, D. E., Soltis, P. S., Stevenson, D. W., Ullrich, K. K., Wickett, N. J., DeGironimo, L., Edger, P. P., Jordon-Thaden, I. E., Joya, S., Liu, T., Melkonian, B., Miles, N. W., Pokorny, L., Quigley, C., Thomas, P., Villarreal, J. C., Augustin, M. M., Barrett, M. D., Baucom, R. S., Beerling, D. J., Benstein, R. M., Biffin, E., Brockington, S. F., Burge, D. O., Burris, J. N., Burris, K. P., Burtet-Sarramegna, V., Caicedo, A. L., Cannon, S. B., Çebi, Z., Chang, Y., Chater, C., Cheeseman, J. M., Chen, T., Clarke, N. D., Clayton, H., Covshoff, S., Crandall-Stotler, B. J., Cross, H., dePamphilis, C. W., Der, J. P., Determann, R., Dickson, R. C., Stilio, D., S., V., Ellis, S., Fast, E., Feja, N., Field, K. J., Filatov, D. A., Finnegan, P. M., Floyd, S. K., Fogliani, B., García, N., Gâteblé, G., Godden, G. T., Goh, F. (Q. Y., Greiner, S., Harkess, A., Heaney, J. M., Helliwell, K. E., Heyduk, K., Hibberd, J. M., Hodel, R. G. J., Hollingsworth, P. M., Johnson, M. T. J., Jost, R., Joyce, B., Kapralov, M. V., Kazamia, E., Kellogg, E. A., Koch, M. A., Von Konrat, M., Könyves, K., Kutchan, T. M., Lam, V., Larsson, A., Leitch, A. R., Lentz, R., Li, F.-W., Lowe, A. J., Ludwig, M., Manos, P. S., Mavrodiev, E., McCormick, M. K., McKain, M., McLellan, T., McNeal, J. R., Miller, R. E., Nelson, M. N., Peng, Y., Ralph, P., Real, D., Riggins, C. W., Ruhsam, M., Sage, R. F., Sakai, A. K., Scascitella, M., Schilling, E. E., Schlösser, E.-M., Sederoff, H., Servick, S., Sessa, E. B., Shaw, A. J., Shaw, S. W., Sigel, E. M., Skema, C., Smith, A. G., Smithson, A., Stewart, C. N., Stinchcombe, J. R., Szövényi, P., Tate, J. A., Tiebel, H., Trapnell, D., Villegente, M., Wang, C.-N., Weller, S. G., Wenzel, M., Weststrand, S., Westwood, J. H., Whigham, D. F., Wu, S., Wulff, A. S., Yang, Y., Zhu, D., Zhuang, C., Zuidof, J., Chase, M. W., Pires, J. C., Rothfels, C. J., Yu, J., Chen, C., Chen, L., Cheng, S., Li, J., Li, R., Li, X., Lu, H., Ou, Y., Sun, X., Tan, X., Tang, J., Tian, Z., Wang, F., Wang, J., Wei, X., Xu, X., Yan, Z., Yang, F., Zhong, X., Zhou, F., Zhu, Y., Zhang, Y., Ayyampalayam, S., Barkman, T. J., Nguyen, N.-phuong, Matasci, N., Nelson, D. R., Sayyari, E., Wafula, E. K., Walls, R. L., Warnow, T., An, H., Arrigo, N., Baniaga, A. E., Galuska, S., Jorgensen, S. A., Kidder, T. I., Kong, H., Lu-Irving, P., Marx, H. E., Qi, X., Reardon, C. R., Sutherland, B. L., Tiley, G. P., Welles, S. R., Yu, R., Zhan, S., Gramzow, L., Theißen, G., Wong, G. K.-S. & Initiative, O. T. P. T. One thousand plant transcriptomes and the phylogenomics of green plants. Nature 574, 679–685 (2019).
10.
Journal Article
Lehwark, P. & Greiner, S. GB2sequin-A file converter preparing custom GenBank files for database submission. Genomics 111, 759–761 (2019).
11.
Journal Article
Sobanski, J., Giavalisco, P., Fischer, A., Kreiner, J. M., Walther, D., Schöttler, M. A., Pellizzer, T., Golczyk, H., Obata, T., Bock, R., Sears, B. B. & Greiner, S. Chloroplast competition is controlled by lipid biosynthesis in evening primroses. Proceedings of the National Academy of Sciences of the United States of America 116, 5665–5674 (2019).
12.
Journal Article
Tillich, M., Lehwark, P., Pellizzer, T., Ulbricht-Jones, E. S., Fischer, A., Bock, R. & Greiner, S. GeSeq - versatile and accurate annotation of organelle genomes. Nucleic Acids Research 45, W6–W11 (2017).
13.
Journal Article
Massouh, A., Schubert, J., Yaneva-Roder, L., Ulbricht-Jones, E. S., Zupok, A., Johnson, M. T. J., Wright, S. I., Pellizer, T., Sobanski, J., Bock, R. & Greiner, S. Spontaneous Chloroplast Mutants Mostly Occur by Replication Slippage and Show a Biased Pattern in the Plastome of Oenothera. The Plant Cell 28, 911–929 (2016).
14.
Journal Article
Agren, J. A., Greiner, S., Johnson, M. T. J. & Wright, S. I. No evidence that sex and transposable elements drive genome size variation in evening primroses. Evolution 69, 1053–1062 (2015).
15.
Journal Article
Hollister, J. D., Greiner, S., Wang, W., Wang, J., Zhang, Y., Wong, G. K.-S., Wright, S. I. & Johnson, M. T. J. Recurrent Loss of Sex Is Associated with Accumulation of Deleterious Mutations in Oenothera. Molecular Biology and Evolution 32, 896–905 (2015).
16.
Journal Article
Greiner, S., Sobanski, J. & Bock, R. Why are most organelle genomes transmitted maternally? Bioessays 37, 80–94 (2015).
17.
Journal Article
Greiner, S. & Koehl, K. I. Growing evening primroses (Oenothera). Frontiers in Plant Science 5, (2014).
18.
Journal Article
Golczyk, H., Greiner, S., Wanner, G., Weihe, A., Bock, R., Börner, T. & Herrmann, R. G. Chloroplast DNA in mature and senescing leaves - a reappraisal. The Plant Cell 26, 847–854 (2014).
19.
Journal Article
Golczyk, H., Massouh, A. & Greiner, S. Translocations of Chromosome End-Segments and Facultative Heterochromatin Promote Meiotic Ring Formation in Evening Primroses. The Plant Cell 26, 1280–1293 (2014).
20.
Journal Article
Greiner, S. & Bock, R. Tuning a ménage à trois: co-evolution and co-adaptation of nuclear and organellar genomes in plants. Bioessays 35, 354–365 (2013).
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