Review Article (435)

4901.
Review Article
Siqueira, J.A.; Batista-Silva, W.; Zsögön, A.; Fernie, A. R.; Araújo, W.L.; Nunes-Nesi, A.: Plant domestication: setting biological clocks. Trends in Plant Science 28 (5), pp. 597 - 608 (2023)
4902.
Review Article
Schlossarek, D.; Zhang, Y.; Sokolowska, E.; Fernie, A. R.; Luzarowski, M.; Skirycz, A.: Don’t let go – co-fractionation mass spectrometry for untargeted mapping of protein-metabolite interactomes. The Plant Journal 113 (5), pp. 904 - 914 (2023)
4903.
Review Article
Sreenivasulu, N.; Alseekh, S.; Tiozon, R. N.; Graner, A.; Martin, C.; Fernie, A. R.: Metabolic Signatures from Genebank Collections: An Underexploited Resource for Human Health? Annual Review of Food Science and Technology 14, pp. 183 - 202 (2023)
4904.
Review Article
Su, H.; van Eerde, A.; Rimstad, E.; Bock, R.; Branza-Nichita, N.; Yakovlev, I. A.; Clarke, J. L.: Plant-made vaccines against viral diseases in humans and farm animals. Frontiers in Plant Science 14, 1170815 (2023)
4905.
Review Article
Zhu, F.; Wen, W.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: Integrating multiomics data accelerates elucidation of plant primary and secondary metabolic pathways. aBIOTECH 4, pp. 47 - 56 (2023)
4906.
Review Article
Alamillo, J.M.; López, C.M.; Martinez Rivas, F.J.; Torralbo, F.; Bulut, M.; Alseekh, S.: Clustered regularly interspaced short palindromic repeats/CRISPR-associated protein and hairy roots: a perfect match for gene functional analysis and crop improvement. Current Opinion in Biotechnology 79, 102876 (2023)
4907.
Review Article
Hayashi , K.; Alseekh, S.; Fernie, A. R.: Genetic and epigenetic control of the plant metabolome. Proteomics 23 (13-14), 2200104 (2023)
4908.
Review Article
Rosado-Souza, L.; Yokoyama, R.; Sonnewald, U.; Fernie, A. R.: Understanding source–sink interactions: Progress in model plants and translational research to crops. Molecular Plant 16 (1), pp. 96 - 121 (2023)
4909.
Review Article
de Souza, L. P.; Fernie, A. R.: Computational methods for processing and interpreting mass spectrometry-based metabolomics. Essays in Biochemistry 68 (1), pp. 5 - 13 (2023)
4910.
Review Article
Østerlund, I.; Persson, S.; Nikoloski, Z.: Tracing and tracking filamentous structures across scales: A systematic review. Computational and Structural Biotechnology Journal 21, pp. 452 - 462 (2023)
4911.
Review Article
Wang, S.; Qiang, Q.; Xiang, L.; Fernie, A. R.; Yang, J.: Targeted approaches to improve tomato fruit taste. Horticulture Research 10 (1), uhac229 (2023)
4912.
Review Article
Urrea-Castellanos, R.; Caldana, C.; Henriques, R.: Growing at the right time: interconnecting the TOR pathway with photoperiod and circadian regulation. Journal of Experimental Botany 73 (20), pp. 7006 - 7015 (2022)
4913.
Review Article
Orsi, E.; Claassens, N.; Nikel, P.; Lindner, S. N.: Optimizing microbial networks through metabolic bypasses. Biotechnology Advances 60, 108035 (2022)
4914.
Review Article
Kameoka, H.; Gutjahr, C.: Functions of Lipids in Development and Reproduction of Arbuscular Mycorrhiza Fungi. Plant and Cell Physiology 63, pp. 1356 - 1365 (2022)
4915.
Review Article
Schwenkert, S.; Fernie, A. R.; Geigenberger, P.; Leister, D.; Möhlmann, T.; Naranjo, B.; Neuhaus, H. E.: Chloroplasts are key players to cope with light and temperature stress. Trends in Plant Science 27 (6), pp. 577 - 587 (2022)
4916.
Review Article
Tedesco, S.; Fevereiro, P.; Kragler, F.; Pina, A.: Plant grafting and graft incompatibility: A review from the grapevine perspective. Scientia Horticulturae 299, 111019 (2022)
4917.
Review Article
Omranian, S.; Nikoloski, Z.; Grimm, D.: Computational identification of protein complexes from network interactions: Present state, challenges, and the way forward. Computational and Structural Biotechnology Journal 20, pp. 2699 - 2712 (2022)
4918.
Review Article
Sreenivasulu, N.; Zhang, C.; Tiozon, R.J.N.; Liu, Q.: Post-genomics revolution in the design of premium quality rice in a high-yielding background to meet consumer demands in the 21st century. Plant Communications 3 (3), 100271 (2022)
4919.
Review Article
Kehr, J.; Morris, R. J.; Kragler, F.: Long-Distance Transported RNAs: From Identity to Function. Annual Review of Plant Biology 73, pp. 457 - 474 (2022)
4920.
Review Article
Liu, Y.; Fernie, A. R.; Tohge, T.: Diversification of Chemical Structures of Methoxylated Flavonoids and Genes Encoding Flavonoid-O-Methyltransferases. Plants 11 (4), 564 (2022)
4921.
Review Article
Das, D.; Gutjahr, C.: Old dog, new trick: The PHR-SPX system regulates arbuscular mycorrhizal symbiosis. Molecular Plant 15 (2), pp. 225 - 227 (2022)
4922.
Review Article
Gupta, K.J.; Kaladhar, V.C.; Fitzpatrick, T.B.; Fernie, A. R.; Møller, I.M.; Loake, G.J.: Nitric oxide regulation of plant metabolism. Molecular Plant 15 (2), pp. 228 - 242 (2022)
4923.
Review Article
Custodio, V.; Gonin, M.; Stabl, G.; Bakhoum, N.; Oliveira, M.; Gutjahr, C.; Castrillo, G.: Sculpting the soil microbiota. The Plant Journal 109 (3), pp. 508 - 522 (2022)
4924.
Review Article
Shen, S.; Zhan, C.; Yang, C.; Fernie, A. R.; Luo, J.: Metabolomics-centered mining of plant metabolic diversity and function: Past decade and future perspectives. Molecular Plant 16 (1), pp. 43 - 63 (2022)
4925.
Review Article
Tiozon, R.J.N.; Sartagoda, K. J. D.; Fernie, A. R.; Sreenivasulu, N.: The nutritional profile and human health benefit of pigmented rice and the impact of post-harvest processes and product development on the nutritional components: A review. Critical Reviews in Food Science and Nutrition 63 (19), pp. 3867 - 3894 (2021)
4926.
Review Article
Zhang, Y.; Fernie, A. R.: Stable and temporary enzyme complexes and metabolons involved in energy and redox metabolism. ANTIOXIDANTS & REDOX SIGNALING 35 (10), pp. 788 - 807 (2021)
4927.
Review Article
Medeiros, D.B.; Aarabi, F.; Rivas f; Fernie, A. R.: The knowns and unknowns of intracellular partitioning of carbon and nitrogen, with focus on the organic acid-mediated interplay between mitochondrion and chloroplast. Journal of Plant Physiology 266, 153521 (2021)
4928.
Review Article
Wu, T.; Kerbler, S. M.; Fernie, A. R.; Zhang, Y.: Plant cell cultures as heterologous bio-factories for secondary metabolite production. Plant Communications 2, 100235 (2021)
4929.
Review Article
Figueroa, C. M.; Lunn, J. E.; Iglesias, A. A.: Nucleotide-sugar metabolism in plants: the legacy of Luis F. Leloir. Journal of Experimental Botany 72 (11), pp. 4053 - 4067 (2021)
4930.
Review Article
John, S.; Jadwiga Olas, J.; Mueller-Roeber, B.: Regulation of alternative splicing in response to temperature variation in plants. Journal of Experimental Botany 72 (18), pp. 6150 - 6163 (2021)
4931.
Review Article
Maeda, H. A.; Fernie, A. R.: Evolutionary History of Plant Metabolism. Annu. Rev. Plant Biol. 72, pp. 185 - 216 (2021)
4932.
Review Article
Alseekh, S.; Scossa, F.; Wen, W.; Luo, J.; Yan, J.; Beleggia, R.; Klee, H. J.; Huang, S.; Papa, R.; Fernie, A. R.: Domestication of Crop Metabolomes: Desired and Unintended Consequences. Trends in Plant Science 26 (6), pp. 650 - 661 (2021)
4933.
Review Article
Berger, F.; Gutjahr, C.: Factors affecting plant responsiveness to arbuscular mycorrhiza. Current Opinion in Plant Biology 59 (SI), 101994 (2021)
4934.
Review Article
Calderan-Rodrigues, M.J.; de Barros Dante, L.L.; Cheavegatti Gianotto, A.; Caldana, C.: Applying Molecular Phenotyping Tools to Explore Sugarcane Carbon Potential. Frontiers in Plant Science 12, 637166 (2021)
4935.
Review Article
Klionsky, D. J.; Abdel-Aziz, A. K.; Abdelfatah, S.; Abdellatif, M.; Abdoli, A.; Abel, S.; Abeliovich, H.; Abildgaard, M. H.; Abudu, Y. P.; Acevedo-Arozena, A. et al.; Adamopoulos, I. E.; Adeli, K.; Adolph, T. E.; Adornetto, A.; Aflaki, E.; Agam, G.; Agarwal, A.; Aggarwal, B. B.; Agnello, M.; Agostinis, P.; Agrewala, J. N.; Agrotis, A.; Aguilar, P. V.; Ahmad, S. T.; Ahmed, Z. M.; Ahumada-Castro, U.; Aits, S.; Aizawa, S.; Akkoc, Y.; Akoumianaki, T.; Akpinar, H. A.; Al-Abd, A. M.; Al-Akra, L.; Al-Gharaibeh, A.; Alaoui-Jamali, M. A.; Alberti, S.; Alcocer-Gómez, E.; Alessandri, C.; Ali, M.; Al-Bari, M. A. A.; Aliwaini, S.; Alizadeh, J.; Almacellas, E.; Almasan, A.; Alonso, A.; Alonso, G. D.; Altan-Bonnet, N.; Altieri, D. C.; Álvarez, É. M. C.; Alves, S.; da Costa, C. A.; Alzaharna, M. M.; Amadio, M.; Amantini, C.; Amaral, C.; Ambrosio, S.; Amer, A. O.; Ammanathan, V.; An, Z.; Andersen, S. U.; Andrabi, S. A.; Andrade-Silva, M.; Andres, A. M.; Angelini, S.; Ann, D.; Anozie, U. C.; Ansari, M. Y.; Antas, P.; Antebi, A.; Antón, Z.; Anwar, T.; Apetoh, L.; Apostolova, N.; Araki, T.; Araki, Y.; Arasaki, K.; Araújo, W. L.; Araya, J.; Arden, C.; Arévalo, M.-A.; Arguelles, S.; Arias, E.; Arikkath, J.; Arimoto, H.; Ariosa, A. R.; Armstrong-James, D.; Arnauné-Pelloquin, L.; Aroca, A.; Arroyo, D. S.; Arsov, I.; Artero, R.; Asaro, D. M. L.; Aschner, M.; Ashrafizadeh, M.; Ashur-Fabian, O.; Atanasov, A. G.; Au, A. K.; Auberger, P.; Auner, H. W.; Aurelian, L.; Autelli, R.; Avagliano, L.; Ávalos, Y.; Aveic, S.; Aveleira, C. A.; Avin-Wittenberg, T.; Aydin, Y.; Ayton, S.; Ayyadevara, S.; Azzopardi, M.; Baba, M.; Backer, J. M.; Backues, S. K.; Bae, D.-H.; Bae, O.-N.; Bae, S. H.; Baehrecke, E. H.; Baek, A.; Baek, S.-H.; Baek, S. H.; Bagetta, G.; Bagniewska-Zadworna, A.; Bai, H.; Bai, J.; Bai, X.; Bai, Y.; Bairagi, N.; Baksi, S.; Balbi, T.; Baldari, C. T.; Balduini, W.; Ballabio, A.; Ballester, M.; Balazadeh, S.; Balzan, R.; Bandopadhyay, R.; Banerjee, S.; Banerjee, S.; Bánréti, Á.; Bao, Y.; Baptista, M. S.; Baracca, A.; Barbati, C.; Bargiela, A.; Barilà, D.; Barlow, P. G.; Barmada, S. J.; Barreiro, E.; Barreto, G. E.; Bartek, J.; Bartel, B.; Bartolome, A.; Barve, G. R.; Basagoudanavar, S. H.; Bassham, D. C.; Jr, R. C. B.; Basu, A.; Batoko, H.; Batten, I.; Baulieu, E. E.; Baumgarner, B. L.; Bayry, J.; Beale, R.; Beau, I.; Beaumatin, F.; Bechara, L. R.G.; Jr., G. R. B.; Beers, M. F.; Begun, J.; Behrends, C.; Behrens, G. M.N.; Bei, R.; Bejarano, E.; Bel, S.; Behl, C.; Belaid, A.; Belgareh-Touzé, N.; Bellarosa, C.; Belleudi, F.; Pérez, M. B.; Bello-Morales, R.; de Beltran, J. S. O.; Beltran, S.; Benbrook, D. M.; Bendorius, M.; Benitez, B. A.; Benito-Cuesta, I.; Bensalem, J.; Berchtold, M. W.; Berezowska, S.; Bergamaschi, D.; Bergami, M.; Bergmann, A.; Berliocchi, L.; Berlioz-Torrent, C.; Bernard, A.; Berthoux, L.; Besirli, C. G.; Besteiro, S.; Betin, V. M.; Beyaert, R.; Bezbradica, J. S.; Bhaskar, K.; Bhatia-Kissova, I.; Bhattacharya, R.; Bhattacharya, S.; Bhattacharyya, S.; Bhuiyan, M. S.; Bhutia, S. K.; Bi, L.; Bi, X.; Biden, T. J.; Bijian, K.; Billes, V. A.; Binart, N.; Bincoletto, C.; Birgisdottir, A. B.; Bjorkoy, G.; Blanco, G.; Blas-Garcia, A.; Blasiak, J.; Blomgran, R.; Blomgren, K.; Blum, J. S.; Boada-Romero, E.; Boban, M.; Boesze-Battaglia, K.; Boeuf, P.; Boland, B.; Bomont, P.; Bonaldo, P.; Bonam, S. R.; Bonfili, L.; Bonifacino, J. S.; Boone, B. A.; Bootman, M. D.; Bordi, M.; Borner, C.; Bornhauser, B. C.; Borthakur, G.; Bosch, J.; Bose, S.; Botana, L. M.; Botas, J.; Boulanger, C. M.; Boulton, M. E.; Bourdenx, M.; Bourgeois, B.; Bourke, N. M.; Bousquet, G.; Boya, P.; Bozhkov, P. V.; Bozi, L. H. M.; Bozkurt, T. O.; Brackney, D. E.; Brandts, C. H.; Braun, R. J.; Braus, G. H.; Bravo-Sagua, R.; Pedro, J. M. B.-S.; Brest, P.; Bringer, M.-A.; Briones-Herrera, A.; Broaddus, V. C.; Brodersen, P.; Brodsky, J. L.; Brody, S. L.; Bronson, P. G.; Bronstein, J. M.; Brown, C. N.; Brown, R. E.; Brum, P. C.; Brumell, J. H.; Brunetti-Pierri, N.; Bruno, D.; Bryson-Richardson, R. J.; Bucci, C.; Buchrieser, C.; Bueno, M.; Buitrago-Molina, L. E.; Buraschi, S.; Buch, S.; Buchan, J. R.; Buckingham, E. M.; Budak, H.; Budini, M.; Bultynck, G.; Burada, F.; Burgoyne, J. R.; Burón, M. I.; Bustos, V.; Büttner, S.; Butturini, E.; Byrd, A.; Cabas, I.; Cabrera-Benitez, S.; Cadwell, K.; Cai, J.; Cai, L.; Cai, Q.; Cairó, M.; Calbet, J. A.; Caldwell, G. A.; Caldwell, K. A.; Call, J. A.; Calvani, R.; Calvo, A. C.; Barrera, M. C.-R.; Camara, N. O.; Camonis, J. H.; Camougrand, N.; Campanella, M.; Campbell, E. M.; Campbell-Valois, F.-X.; Campello, S.; Campesi, I.; Campos, J. C.; Camuzard, O.; Cancino, J.; de Almeida, D. C.; Canesi, L.; Caniggia, I.; Canonico, B.; Cantí, C.; Cao, B.; Caraglia, M.; Caramés, B.; Carchman, E. H.; Cardenal-Muñoz, E.; Cardenas, C.; Cardenas, L.; Cardoso, S. M.; Carew, J. S.; Carle, G. F.; Carleton, G.; Carloni, S.; Carmona-Gutierrez, D.; Carneiro, L. A.; Carnevali, O.; Carosi, J. M.; Carra, S.; Carrier, A.; Carrier, L.; Carroll, B.; Carter, A. B.; Carvalho, A. N.; Casanova, M.; Casas, C.; Casas, J.; Cassioli, C.; Castillo, E. F.; Castillo, K.; Castillo-Lluva, S.; Castoldi, F.; Castori, M.; Castro, A. F.; Castro-Caldas, M.; Castro-Hernandez, J.; Castro-Obregon, S.; Catz, S. D.; Cavadas, C.; Cavaliere, F.; Cavallini, G.; Cavinato, M.; Cayuela, M. L.; Rica, P. C.; Cecarini, V.; Cecconi, F.; Cechowska-Pasko, M.; Cenci, S.; Ceperuelo-Mallafré, V.; Cerqueira, J. J.; Cerutti, J. M.; Cervia, D.; Cetintas, V. B.; Cetrullo, S.; Chae, H.-J.; Chagin, A. S.; Chai, C.-Y.; Chakrabarti, G.; Chakrabarti, O.; Chakraborty, T.; Chakraborty, T.; Chami, M.; Chamilos, G.; Chan, D. W.; Chan, E. Y. W.; Chan, E. D.; Chan, H.Y. E.; Chan, H. H.; Chan, H.; Chan, M. T.V.; Chan, Y. S.; Chandra, P. K.; Chang, C.-P.; Chang, C.; Chang, H.-C.; Chang, K.; Chao, J.; Chapman, T.; Charlet-Berguerand, N.; Chatterjee, S.; Chaube, S. K.; Chaudhary, A.; Chauhan, S.; Chaum, E.; Checler, F.; Cheetham, M. E.; Chen, C.-S.; Chen, G.-C.; Chen, J.-F.; Chen, L. L.; Chen, L.; Chen, L.; Chen, M.; Chen, M.-K.; Chen, N.; Chen, Q.; Chen, R.-H.; Chen, S.; Chen, W.; Chen, W.; Chen, X.-M.; Chen, X.-W.; Chen, X.; Chen, Y.; Chen, Y.-G.; Chen, Y.; Chen, Y.; Chen, Y.-J.; Chen, Y.-Q.; Chen, Z. S.; Chen, Z.; Chen, Z.-H.; Chen, Z. J.; Chen, Z.; Cheng, H.; Cheng, J.; Cheng, S.-Y.; Cheng, W.; Cheng, X.; Cheng, X.-T.; Cheng, Y.; Cheng, Z.; Chen, Z.; Cheong, H.; Cheong, J. K.; Chernyak, B. V.; Cherry, S.; Cheung, C. F. R.; Cheung, C. H. A.; Cheung, K.-H.; Chevet, E.; Chi, R. J.; Chiang, A. K. S.; Chiaradonna, F.; Chiarelli, R.; Chiariello, M.; Chica, N.; Chiocca, S.; Chiong, M.; Chiou, S.-H.; Chiramel, A. I.; Chiurchiù, V.; Cho, D.-H.; Choe, S.-K.; Choi, A. M.K.; Choi, M. E.; Choudhury, K. R.; Chow, N. S.; Chu, C. T.; Chua, J. P.; Chua, J. J. E.; Chung, H.; Chung, K. P.; Chung, S.; Chung, S.-H.; Chung, Y.-L.; Cianfanelli, V.; Ciechomska, I. A.; Cifuentes, M.; Cinque, L.; Cirak, S.; Cirone, M.; Clague, M. J.; Clarke, R.; Clementi, E.; Coccia, E. M.; Codogno, P.; Cohen, E.; Cohen, M. M.; Colasanti, T.; Colasuonno, F.; Colbert, R. A.; Colell, A.: Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy 17 (1), pp. 1 - 382 (2021)
4936.
Review Article
Köhler, C.; Dziasek, K.; Del Toro-De León, G.: Postzygotic reproductive isolation established in the endosperm: mechanisms, drivers and relevance. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 376 (1826), 20200118 (2021)
4937.
Review Article
Medeiros, D.B.; Brotman, Y.; Fernie, A. R.: The utility of metabolomics as a tool to inform maize biology. Plant Communications 2 (4), 100187 (2021)
4938.
Review Article
Tong, H.; Küken, A.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Characterization of effects of genetic variants via genome-scale metabolic modelling. Cellular and Molecular Life Sciences 78, pp. 5123 - 5138 (2021)
4939.
Review Article
Zhang, Y.; Fernie, A. R.: Metabolons, Enzyme-Enzyme Assemblies that Mediate Substrate Channeling, and Their Roles in Plant Metabolism. Plant Communications 2 (1), 100081 (2021)
4940.
Review Article
Borghi, M.; Fernie, A. R.: Outstanding questions in flower metabolism. The Plant Journal 103 (4), pp. 1275 - 1288 (2020)
4941.
Review Article
Aarabi, F.; Naake, T.; Fernie, A. R.; Hoefgen, R.: Coordinating Sulfur Pools under Sulfate Deprivation. Trends in Plant Science 25 (12), pp. 1227 - 1239 (2020)
4942.
Review Article
Batista, R. A.; Köhler, C.: Genomic imprinting in plants-revisiting existing models. Genes and Development 34 (1-2), pp. 24 - 36 (2020)
4943.
Review Article
de Souza, L. P.; Alseekh, S.; Brotman, Y.; Fernie, A. R.: Network based strategies in metabolomics data analysis and interpretation: from molecular networking to biological interpretation. Expert Review of Proteomics 17 (4), pp. 243 - 255 (2020)
4944.
Review Article
Fernández-Marín, B.; Gulías, J.; Figueroa, C. M.; Iñiguez, C.; Clemente-Moreno, M. J.; Nunes-Nesi, A.; Fernie, A. R.; Cavieres, L. A.; Bravo, L. A.; García-Plazaola, J. I. et al.; Gago, J.: How do vascular plants perform photosynthesis in extreme environments? An integrative ecophysiological and biochemical story. The Plant Journal 101 (4), pp. 979 - 1000 (2020)
4945.
Review Article
Fernie, A. R.; Bachem, C.W.B.; Helariutta, Y.; Neuhaus, H.E.; Prat, S.; Ruan, Y.-L.; Stitt, M.; Sweetlove, L.J.; Tegeder, M.; Wahl, V. et al.; Sonnewald, S.; Sonnewald, U.: Synchronization of developmental, molecular and metabolic aspects of source–sink interactions. Nature Plants 6, pp. 55 - 66 (2020)
4946.
Review Article
Gupta, K. J.; Mur, L. A. J.; Wany, A.; Kumari, A.; Fernie, A. R.; Ratcliffe, R. G.: The role of nitrite and nitric oxide under low oxygen conditions in plants. New Phytologist 225 (SI-3), pp. 1143 - 1151 (2020)
4947.
Review Article
Kosmacz, M.; Sokolowska, E.; Bouzaa, S.; Skirycz, A.: Towards a functional understanding of the plant metabolome. Current Opinion in Plant Biology 55, pp. 47 - 51 (2020)
4948.
Review Article
Liu, J.; Fernie, A. R.; Yan, J.: The past, present and future of maize improvement – domestication, genomics and functional genomic routes towards crop enhancement. Plant Communications 1, 100010 (2020)
4949.
Review Article
Luo, C.; Fernie, A. R.; Yan, J.: Single-Cell Genomics and Epigenomics: Technologies and Applications in Plants. Trends in Plant Science 25 (10), pp. 1030 - 1040 (2020)
4950.
Review Article
Nunes-Nesi, A.; Cavalcanti, J.H.F.; Fernie, A. R.: Characterization of In Vivo Function(s) of Members of the Plant Mitochondrial Carrier Family. Biomolecules 10 (9), 1226 (2020)
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