Publications of S. Alseekh

Badoni, S., Pasion-Uy, E. A., Kor, S., Kim, S.-R., Tiozon, R. J. N., Misra, G., Buenafe, R. J. Q., Labarga, L. M., Ramos-Castrosanto, A. R., Pratap, V., Slamet-Loedin, I., von Steimker, J., Alseekh, S., Fernie, A. R., Kohli, A., Khush, G. S. & Sreenivasulu, N. Multiomics of a rice population identifies genes and genomic regions that bestow low glycemic index and high protein content. Proceedings of the National Academy of Sciences of the United States of America 121, (2024).

Zhu, F., Wijesingha Ahchige, M., Wen, W., Cheng, Y., Alseekh, S. & Fernie, A. R. The natural variance of Arabidopsis secondary metabolism on extended darkness. Scientific Data 11, (2024).

John, A., Krämer, M., Lehmann, M., Kunz, H.-H., Aarabi, F., Alseekh, S., Fernie, A. R., Sommer, F., Schroda, M., Zimmer, D., Mühlhaus, T., Peisker, H., Gutbrod, K., Dörmann, P., Neunzig, J., Philippar, K. & Neuhaus, H. E. Degradation of FATTY ACID EXPORT PROTEIN1 by RHOMBOID-LIKE PROTEASE11 contributes to cold tolerance in Arabidopsis. The Plant Cell 36, 1937–1962 (2024).

Stavrakeva, K., Metodieva, K., Benina, M., Bivolarska, A., Dimov, I., Choneva, M., Kokova, V., Alseekh, S., Ivanova, V., Vatov, E., Gechev, T., Mladenova, T., Mladenov, R., Todorov, K., Stoyanov, P., Gyuzeleva, D., Popova, M. & Apostolova, E. Metabolic Composition of Methanolic Extract of the Balkan Endemic Species Micromeria frivaldszkyana (Degen) Velen and Its Anti-Inflammatory Effect on Male Wistar Rats. International Journal of Molecular Sciences 25, (2024).

Apodiakou, A., Alseekh, S., Hoefgen, R. & Whitcomb, S. J. Overexpression of SLIM1 transcription factor accelerates vegetative development in Arabidopsis thaliana. Frontiers in Plant Science 15, (2024).

Bortlik, J., Lühle, J., Alseekh, S., Weiste, C., Fernie, A. R., Dröge-Laser, W. & Börnke, F. DOMAIN OF UNKNOWN FUNCTION581-9 negatively regulates SnRK1 kinase activity. Plant Physiology 194, 1853–1869 (2024).

El-Shiekh, R. A., Elshimy, R., Mandour, A. A., Kassem, H. A. H., Khaleel, A. E., Alseekh, S., Fernie, A. R. & Salem, M. A. Murraya koenigii (L.) Sprengel seeds and pericarps in relation to their chemical profiles: new approach for multidrug resistant Acinetobacterbaumannii ventilator-associated pneumonia. Applied Biological Chemistry 67, (2024).

Naake, T., Zhu, F., Alseekh, S., Scossa, F., de Souza, L. P., Borghi, M., Brotman, Y., Mori, T., Nakabayashi, R., Tohge, T. & Fernie, A. R. Genome-wide association studies identify loci controlling specialized seed metabolites in Arabidopsis. Plant Physiology 194, 1705–1721 (2024).

Timm, S., Klaas, N., Niemann, J., Jahnke, K., Alseekh, S., Zhang, Y. J., Souza, P. V. L., Hou, L.-Y., Cosse, M., Selinski, J., Geigenberger, P., Daloso, D. M., Fernie, A. R. & Hagemann, M. Thioredoxins o1 and h2 jointly adjust mitochondrial dihydrolipoamide dehydrogenase-dependent pathways towards changing environments. Plant, Cell and Environment 47, 2542–2560 (2024).

Dziubek, D., Poeker, L., Siemiatkowska, B., Graf, A., Marino, G., Alseekh, S., Arrivault, S., Fernie, A. R., Armbruster, U. & Geigenberger, P. NTRC and thioredoxins m1/m2 underpin the light acclimation of plants on proteome and metabolome levels. Plant Physiology 194, 982–1005 (2024).

Elbanna, A. H., Abdelghany, S., Alseekh, S., Fernie, A. R. & Farag, M. A. Seasonal and taxa impact on edible sea cucumber metabolome as analyzed via a multiplex approach of mass spectroscopy-based metabolomics. Food Bioscience 57, (2024).

Karakas, E., Ferrante, P., Schafleitner, R., Giuliano, G., Fernie, A. R. & Alseekh, S. Plant Sample Collection and Shipment for Multi-omic Analyses and Phytosanitary Evaluation. Current Protocols 3, (2023).

Zhang, Y. J., Wiese, L., Fang, H., Alseekh, S., de Souza, L. P., Scossa, F., Molloy, J., Christmann, M. & Fernie, A. R. Synthetic biology identifies the minimal gene set required for Paclitaxel biosynthesis in a plant chassis. Molecular Plant 16, 1951–1961 (2023).

Bulut, M., Nunes-Nesi, A., Fernie, A. R. & Alseekh, S. Characterization of PetM cytochrome b6f subunit 7 domain-containing protein in tomato. Horticulture Research 10, (2023).

Duque-Jaramillo, A., Ulmer, N., Alseekh, S., Bezrukov, I., Fernie, A. R., Skirycz, A., Karasov, T. L. & Weigel, D. The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava. New Phytologist 240, 1961–1975 (2023).

Gyuzeleva, D., Benina, M., Ivanova, V., Vatov, E., Alseekh, S., Mladenova, T., Mladenov, R., Todorov, K., Bivolarska, A. & Stoyanov, P. Metabolome Profiling of Marrubium peregrinum L. and Marrubium friwaldskyanum Boiss Reveals Their Potential as Sources of Plant-Based Pharmaceuticals. International Journal of Molecular Sciences 24, (2023).

Qian, D., Xi, J., Nie, Y., Zou, M., Zhang, J., Alseekh, S., Fernie, A. R., Chen, J. & Huang, L. Chemical characterization of dicaffeoyl polyamine derivatives to understand specific secondary metabolites in goji berry. Journal of Food Composition and Analysis 122, (2023).

Aarabi, F., Ghigi, A., Wijesingha Ahchige, M., Bulut, M., Geigenberger, P., Neuhaus, H. E., Sampathkumar, A., Alseekh, S. & Fernie, A. R. Genome-Wide Association Study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation. Plant Physiology 193, 2037–2054 (2023).

Bulut, M., Wendenburg, R., Bitocchi, E., Bellucci, E., Kroc, M., Gioia, T., Susek, K., Papa, R., Fernie, A. R. & Alseekh, S. A Comprehensive Metabolomics and Lipidomics Atlas for the Legumes Common Bean, Chickpea, Lentil and Lupin. The Plant Journal 116, 1152–1171 (2023).

Zemach, I., Alseekh, S., Tadmor-Levi, R., Fisher, J., Torgeman, S., Trigerman, S., Nauen, J., Hayut, S. F., Mann, V., Rochsar, E., Finkers, R., Wendenburg, R., Osorio, S., Bergmann, S., Lunn, J. E., Semel, Y., Hirschberg, J., Fernie, A. R. & Zamir, D. Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity. The Plant Journal 116, 1136–1151 (2023).