Book Chapter (287)

4101.
Book Chapter
Annunziata, M. G.; Lunn, J. E.: Regulation of Assimilatory Starch Metabolism by Cellular Carbohydrate Status. In: Enzymology of Complex Alpha-Glucans, 1st Ed. (Ed. Nitschke, F.). CRC Press, Boca Raton (2021)
4102.
Book Chapter
Bauwe, H.; Fernie, A. R.: With a Little Help from My Friends: The Central Role of Photorespiration and Related Metabolic Processes in the Acclimation and Adaptation of Plants to Oxygen and to Low-CO2 Stress. In: Photosynthesis, Respiration, and Climate Change, Vol. 48, pp. 355 - 385 (Eds. Becklin, K. M.; Ward, J. K.; Way, D. A.). Springer, Cham (2021)
4103.
Book Chapter
Bock, R.: Engineering Chloroplasts for High-Level Constitutive or Inducible Transgene Expression. In: Chloroplast Biotechnology: Methods and Protocols, Vol. 2317, pp. 77 - 94 (Ed. Maliga, P.). Springer US, New York, NY (2021)
4104.
Book Chapter
Nieva, A.S.; Ruiz, O. A.: Lotus spp.: A Foreigner that Came to Stay Forever: Economic and Environmental Changes Caused by Its Naturalization in the Salado River Basin (Argentina). In: Saline and Alkaline Soils in Latin America: Natural Resources, Management and Productive Alternatives, pp. 431 - 446 (Eds. Taleisnik, E.; Lavado, R. S.). Springer International Publishing, Cham (2021)
4105.
Book Chapter
Ruf, S.; Bock, R.: Plastid Transformation in Tomato: A Vegetable Crop and Model Species. In: Chloroplast Biotechnology: Methods and Protocols, Vol. 2317, pp. 217 - 228 (Ed. Maliga, P.). Springer US, New York, NY (2021)
4106.
Book Chapter
Torabi, S.; Varshney, K.; Villaecija-Aguilar, J.; Keymer, A.; Gutjahr, C.: Controlled Assays for Phenotyping the Effects of Strigolactone-Like Molecules on Arbuscular Mycorrhiza Development. In: STRIGOLACTONES: Methods and Protocols, pp. 157 - 177 (2021)
4107.
Book Chapter
Villaecija-Aguilar, J.; Struk, S.; Goormachtig, S.; Gutjahr, C.: Bioassays for the Effects of Strigolactones and Other Small Molecules on Root and Root Hair Development. In: STRIGOLACTONES: Methods and Protocols, pp. 129 - 142 (2021)
4108.
Book Chapter
Wu, S.; Alseekh, S.; Brotman, Y.; Fernie, A. R.: Metabolomic Analysis of Natural Variation in Arabidopsis. In: ARABIDOPSIS PROTOCOLS, 4 EDITION, Vol. 2200, pp. 393 - 411 (Eds. Sanchez-Serrano, J.; Salinas, J.) (2021)
4109.
Book Chapter
Erban, A.; Martinez-Seidel, F.; Rajarathinam, Y.; Dethloff, F.; Orf, I.; Fehrle, I.; Alpers, J.; Beine-Golovchuk, O.; Kopka, J.: Multiplexed Profiling and Data Processing Methods to Identify Temperature-Regulated Primary Metabolites Using Gas Chromatography Coupled to Mass Spectrometry. In: Plant Cold Acclimation: Methods in molecular biology, Vol. 2156, pp. 203 - 239 (Eds. Hincha, D. K.; Zuther, E.) (2020)
4110.
Book Chapter
Forner, J.: Germline-Transmitted Genome Editing Methodology in Arabidopsis thaliana Using TAL Effector Nucleases. In: Plant Stem Cells: Methods and Protocols, pp. 23 - 30 (Eds. Naseem, M.; Dandekar, T.). Springer US, New York, NY (2020)
4111.
Book Chapter
Hincha, D. K.; Zuther, E.: Introduction: Plant Cold Acclimation and Winter Survival. In: Plant Cold Acclimation: Methods and Protocols, Vol. 2156, pp. 1 - 7 (Eds. Hincha, D. K.; Zuther, E.). Springer US, New York, NY (2020)
4112.
Book Chapter
Naake, T.; Gaquerel, E.; Fernie, A. R.: Annotation of Specialized Metabolites from High-Throughput and High Resolution Mass Spectrometry Metabolomics. In: Computational Methods and Data Analysis for Metabolomics, pp. 209 - 225 (Ed. Li, S.). Springer US, New York, NY (2020)
4113.
Book Chapter
Naseri, G.; Mueller-Roeber, B.: A Step-by-Step Protocol for COMPASS, a Synthetic Biology Tool for Combinatorial Gene Assembly. In: DNA Cloning and Assembly: Methods and Protocols, pp. 277 - 303 (Eds. Chandran, S.; George, K. W.). Springer US, New York, NY (2020)
4114.
Book Chapter
Seerangan, K.; van Spoordonk, R.; Sampathkumar, A.; Eng, R.C.: Long-term live-cell imaging techniques for visualizing pavement cell morphogenesis. In: Methods in cell biology, Vol. 160, pp. 365 - 380 (2020)
4115.
Book Chapter
Takahashi, D.; Zuther, E.; Hincha, D. K.: Analysis of Changes in Plant Cell Wall CompositionCell wallcompositions and Structure During Cold Acclimation. In: Plant Cold Acclimation: Methods and Protocols, Vol. 2156, pp. 255 - 268 (Eds. Hincha, D. K.; Zuther, E.). Springer US, New York, NY (2020)
4116.
Book Chapter
Thalhammer, A.; Pagter, M.; Hincha, D. K.; Zuther, E.: Measuring Freezing Tolerance of Leaves and Rosettes: Electrolyte Leakage and Chlorophyll Fluorescence Assays. In: Plant Cold Acclimation: Methods in Molecular Biology, Vol. 2156, pp. 9 - 21 (Eds. Hincha, D. K.; Zuther, E.). Springer, US (2020)
4117.
Book Chapter
Das, D.; Gutjahr, C.: Role of phytohormones in arbuscular mycorrhiza development. In: The Model Legume Medicago truncatula, p. 7.1.2 (Ed. de Bruijn, F.). Wiley (2019)
4118.
Book Chapter
Llorente, C.; Jimenez, R.; Brotman, Y.; Fernie, A. R.; Sreenivasulu, N.; Jackie: Rice Grain Quality Benchmarking Through Profiling of Volatiles and Metabolites in Grains Using Gas Chromatography Mass Spectrometry. In: Rice Grain Quality: Methods and Protocols, Vol. 1892, pp. 187 - 199 (Ed. Sreenivasulu, N.). Springer New York, New York, NY (2019)
4119.
Book Chapter
Rochange, S.; Goormachtig, S.; Lopez-Raez, J. A.; Gutjahr, C.: The Role of Strigolactones in Plant–Microbe Interactions. In: Strigolactones - Biology and Applications, pp. 121 - 142 (Eds. Koltai, H.; Prandi, C.). Springer, Cham (2019)
4120.
Book Chapter
Wang, Y.; Kulshreshtha, R.; Sampathkumar, A.: Insights into the Cell Wall and Cytoskeletal Regulation by Mechanical Forces in Plants. In: The Cytoskeleton: Diverse Roles in a Plant's Life, pp. 23 - 36 (Eds. Sahi, V. P.; Baluška, F.). Springer International Publishing, Cham (2019)
4121.
Book Chapter
Alseekh, S.; Wu, S.; Brotman, Y.; Fernie, A. R.: Guidelines for Sample Normalization to Minimize Batch Variation for Large-Scale Metabolic Profiling of Plant Natural Genetic Variance. In: Methods in Molecular Biology, Vol. 1778, pp. 33 - 46 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)
4122.
Book Chapter
de Abreu e Lima, F.; Leifels, L.; Nikoloski, Z.: Regression-Based Modeling of Complex Plant Traits Based on Metabolomics Data. In: Plant Metabolomics: Methods and Protocols, pp. 321 - 327 (Ed. António, C.). Humana Press, New York (2018)
4123.
Book Chapter
de Souza, L. P.; Fernie, A. R.; Tohge, T.: Carbon Atomic Survey for Identification of Selected Metabolic Fluxes. In: Methods in Molecular Biology, Vol. 1778, pp. 59 - 70 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)
4124.
Book Chapter
Feil, R.; Lunn, J. E.: Quantification of Soluble Sugars and Sugar Alcohols by LC-MS/MS. In: Methods in Molecular Biology, Vol. 1778, pp. 87 - 100 (Ed. Walker, J. M.). Humana Press, Clifton, N.J. (2018)
4125.
Book Chapter
Hoffmam, Z. B.; da Silva, V. C. H.; Martins, M. C. M.; Caldana, C.: Applications of Mass Spectrometry in Synthetic Biology. In: Mass Spectrometry in Chemical Biology: Evolving Applications, pp. 159 - 172. Royal Society of Chemistry, Cambridge (2018)
4126.
Book Chapter
Martins, M. C. M.; Caldana, C.; Wolf, L. D.; de Abreu, L. G. F.: The Importance of Experimental Design, Quality Assurance, and Control in Plant Metabolomics Experiments. In: Methods in Molecular Biology, Vol. 1778, pp. 3 - 18 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)
4127.
Book Chapter
Salem, M.A.; Giavalisco, P.: Semi-targeted Lipidomics of Plant Acyl Lipids Using UPLC-HR-MS in Combination with a Data-Independent Acquisition Mode. In: Methods in Molecular Biology, Vol. 1778, pp. 137 - 156 (Ed. Walker, J. M.). Humana Press, Clifton, N.J. (2018)
4128.
Book Chapter
Stuchfield, D.; France, A. P.; Migas, L. G.; Thalhammer, A.; Bremer, A.; Bellina, B.; Barran, P. E.: The Use of Mass Spectrometry to Examine IDPs: Unique Insights and Caveats. In: INTRINSICALLY DISORDERED PROTEINS, pp. 459 - 502 (Ed. Rhoades, E.). Academic Press, Cambridge, MA (2018)
4129.
Book Chapter
Takahashi, D.; Uemura, M.; Kawamura, Y.: Freezing tolerance of plant cells: From the aspect of plasma membrane and microdomain. In: Advances in Experimental Medicine and Biology, Vol. 1081, pp. 61 - 79 (Eds. Cohen, I. R.; Lajtha, A.; Lambris, J. D.; Paoletti, R.; Rezaei, N.). Springer Nature, Singapore (2018)
4130.
Book Chapter
Vallarino, J. G.; Erban, A.; Fehrle, I.; Fernie, A. R.; Kopka, J.; Osorio, S.: Acquisition of Volatile Compounds by Gas Chromatography–Mass Spectrometry (GC-MS). In: Methods in Molecular Biology, Vol. 1778, pp. 225 - 240 (Ed. António, C.). Humana Press, Clifton, N.J. (2018)
4131.
Book Chapter
Watanabe, M.; Tohge, T.; Balazadeh, S.; Erban, A.; Giavalisco, P.; Kopka, J.; Mueller-Roeber, B.; Fernie, A. R.; Hoefgen, R.: Comprehensive Metabolomics Studies of Plant Developmental Senescence. In: Plant Senescence: Methods and Protocols, pp. 339 - 358 (Ed. Guo, Y.). Springer New York, New York, NY (2018)
4132.
Book Chapter
Wenk, S.; Yishai, O.; Lindner, S. N.; Bar-Even, A.: An Engineering Approach for Rewiring Microbial Metabolism. In: ENZYMES IN SYNTHETIC BIOLOGY, pp. 329 - 367 (Ed. Scrutton, N.). Academic Press, Cambridge, MA (2018)
4133.
Book Chapter
Zhao , L.; Xia, Y.; Wu, X.-Y.; Schippers, J. H. M.; Jing, H.-C.: Phenotypic Analysis and Molecular Markers of Leaf Senescence. In: Plant Senescence: Methods and Protocols, Vol. 1744, pp. 35 - 48 (Ed. Guo, Y.). Springer New York, New York, NY (2018)
4134.
Book Chapter
Zuther, E.; Lee, Y. P.; Erban, A.; Kopka, J.; Hincha, D. K.: Natural Variation in Freezing Tolerance and Cold Acclimation Response in Arabidopsis thaliana and Related Species. In: Survival Strategies in Extreme Cold and Desiccation: Adaptation Mechanisms and Their Applications, pp. 81 - 98 (Eds. Iwaya-Inoue, M.; Sakurai, M.; Uemura, M.). Springer Singapore, Singapore (2018)
4135.
Book Chapter
Arrivault, S.; Obata, T.: Quantification of photorespiratory intermediates by mass spectrometry-based approaches. In: Methods in Molecular Biology, Vol. 1653, pp. 97 - 104. Humana Press, Clifton, N.J. (2017)
4136.
Book Chapter
Bock, R.: Witnessing Genome Evolution: Experimental Reconstruction of Endosymbiotic and Horizontal Gene Transfer. In: Annual Review of Genetics, Vol. 51, pp. 1 - 22. Annual Reviews, Inc., Palo Alto, Calif. (2017)
4137.
Book Chapter
de Souza, L. P.; Szecowka, M.; Fernie, A. R.; Tohge, T.: 13CO2 labeling and mass spectral analysis of photorespiration. In: Methods in Molecular Biology, Vol. 1653, pp. 157 - 166. Humana Press, Clifton, N.J. (2017)
4138.
Book Chapter
Del-Saz, N.F.; Ribas-Carbo, M.; Martorell, G.; Fernie, A. R.; Florez-Sarasa, I. D.: Measurements of electron partitioning between cytochrome and alternative oxidase pathways in plant tissues. In: Methods in Molecular Biology, Vol. 1670, pp. 203 - 217. Humana Press, Clifton, N.J. (2017)
4139.
Book Chapter
Fernie, A. R.; Bauwe, H.; Sweetlove, L.J.: Investigating the role of the photorespiratory pathway in non-photosynthetic tissues. In: Methods in Molecular Biology, Vol. 1653, pp. 217 - 225. Humana Press, Clifton, N.J. (2017)
4140.
Book Chapter
Fernie, A. R.; Tohge, T.: The Genetics of Plant Metabolism. In: Annual Review of Genetics, Vol. 51, pp. 287 - 310. Annual Reviews, Palo Alto (2017)
4141.
Book Chapter
Hoefgen, R.; Watanabe, M.: Re-assessing Systems Biology Approaches on Analyzing Sulfate Metabolism. In: Sulfur Metabolism in Higher Plants - Fundamental, Environmental and Agricultural Aspects, pp. 123 - 133 (Eds. De Kok, L. J.; Hawkesford, M. J.; Haneklaus, S. H.; Schnug, E.). Springer International Publishing, Cham (2017)
4142.
Book Chapter
Küken, A.; Nikoloski, Z.: Genome-scale modeling of photorespiratory pathway manipulation. In: Methods in Molecular Biology, Vol. 1653, pp. 195 - 202. Elsevier, Cambridge, MA (2017)
4143.
Book Chapter
Obata, T.; Rosado-Souza, L.; Fernie, A. R.: Coupling radiotracer experiments with chemical fractionation for the estimation of respiratory fluxes. In: Methods in Molecular Biology, Vol. 1670, pp. 17 - 30. Humana Press, Clifton, N.J. (2017)
4144.
Book Chapter
Omena-Garcia, R.P.; Araújo, W.L.; Gibon, Y.; Fernie, A. R.; Nunes-Nesi, A.: Measurement of tricarboxylic acid cycle enzyme activities in plants. In: Methods in Molecular Biology, Vol. 1670, pp. 167 - 182. Springer, New York, NY (2017)
4145.
Book Chapter
Omranian, N.; Nikoloski, Z.: Computational Approaches to Study Gene Regulatory Networks. In: Plant gene Regulatory Networks, Vol. 1629, pp. 283 - 295. Springer, heidelberg (2017)
4146.
Book Chapter
Proost, S.; Mutwil, M.: PlaNet: Comparative Co-Expression Network Analyses for Plants. In: Plant Genomics Databases: Methods and Protocols, Vol. 1533, pp. 213 - 227 (Eds. van Dijk; D.J, A.). Springer New York, New York, NY (2017)
4147.
Book Chapter
Watanabe, M.; Hoefgen, R.: Expression Profile of the Serine Acetyltransferase (SERAT) and O-Acetylserine (thiol)lyase (OASTL) Gene Families in Arabidopsis. In: Sulfur Metabolism in Higher Plants - Fundamental, Environmental and Agricultural Aspects, pp. 31 - 38 (Eds. De Kok, L. J.; Hawkesford, M. J.; Haneklaus, S. H.; Schnug, E.). Springer International Publishing, Cham (2017)
4148.
Book Chapter
Koehl, K. I.: Metabolomics on Combined Abiotic Stress Effects in Crops. In: Drought Stress Tolerance in Plants, Vol 2: Molecular and Genetic Perspectives, pp. 251 - 276 (Eds. Hossain, M. A.; Wani, S. H.; Bhattacharjee, S.; Burritt, D. J.; Tran, L.-S. P.). Springer International Publishing, Cham (2016)
4149.
Book Chapter
Lunn, J. E.: Sucrose Metabolism. In: Encyclopedia of Life Sciences, pp. 1 - 9. Wiley, Basingstoke (2016)
4150.
Book Chapter
Moreno, J.C.; Stange, C.: Apocarotenoids: A New Carotenoid-Derived Pathway. In: Carotenoids in Nature, Vol. 79, pp. 239 - 272. Springer, Switzerland (2016)
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