Publications of C. Caldana

Caldana, C., Carrari, F., Fernie, A. R. & Sampathkumar, A. How metabolism and development are intertwined in space and time. The Plant Journal 116, 347–359 (2023).

Silva, S. F., Miranda, M. T., Cunha, C. P., Domingues-Jr, A. P., Aricetti, J. A., Caldana, C., Machado, E. C. & Ribeiro, R. V. Metabolic profiling of drought tolerance: Revealing how citrus rootstocks modulate plant metabolism under varying water availability. Environmental and Experimental Botany 206, (2023).

Shi, Z., Li, H., Zhang, W., Chen, Y., Zeng, C., Kang, X., Xu, X., Xia, Z., Qing, B., Yuan, Y., Song, G., Caldana, C., Hu, J., Willmitzer, L. & Li, Y. A Comprehensive Mass Spectrometry-Based Workflow for Clinical Metabolomics Cohort Studies. Metabolites 12, (2022).

Caldana, C. & Fernie, A. R. Plant biology: Identification of the connecTOR linking metabolism, epigenetics and development. Current Biology 32, R1272–R1274 (2022).

Li, X., Deng, D., Cataltepe, G., Román, Á., Buckley, C. R., Monte Bello, C. C., Skirycz, A., Caldana, C. & Haydon, M. J. A reactive oxygen species Ca2+ signalling pathway identified from a chemical screen for modifiers of sugar-activated circadian gene expression. New Phytologist 236, 1027–1041 (2022).

Silva, F. M. de O., Bulgarelli, R. G., Mubeen, U., Caldana, C., Andrade, S. A. L. & Mazzafera, P. Low phosphorus induces differential metabolic responses in eucalyptus species improving nutrient use efficiency. Frontiers in Plant Science 13, (2022).

Paschoal, D., Costa, J. L., da Silva, E. M., da Silva, F. B., Capelin, D., Ometto, V., Aricetti, J. A., Carvalho, G. G., Pimpinato, R. F., de Oliveira, R. F., Carrera, E., López-Díaz, I., Rossi, M. L., Tornisielo, V., Caldana, C., Riano-Pachon, D. M., Cesarino, I., Teixeira, P. J. P. L. & Figueira, A. Infection by Moniliophthora perniciosa reprograms Micro-Tom physiology, establishes a sink and increases secondary cell wall synthesis. Journal of Experimental Botany 73, 3651–3670 (2022).

Artins, A. & Caldana, C. The metabolic homeostaTOR: The balance of holding on or letting grow. Current Opinion in Plant Biology 66, (2022).

Skirycz, A., Caldana, C. & Fernie, A. R. Regulation of Plant Primary Metabolism - How Results From Novel Technologies Are Extending Our Understanding From Classical Targeted Approaches. Critical Reviews in Plant Sciences 41, 32–51 (2022).

Calderan-Rodrigues, M. J., Luzarowski, M., Monte Bello, C. C., Minen, R. I., Zühlke, B. M., Nikoloski, Z., Skirycz, A. & Caldana, C. Proteogenic Dipeptides Are Characterized by Diel Fluctuations and Target of Rapamycin Complex-Signaling Dependency in the Model Plant Arabidopsis thaliana. Frontiers in Plant Science 12, (2021).

Dantas, L. L. B., Dourado, M. M., de Lima, N. O., Cavaçana, N., Nishiyama, M., Souza, G. M., Carneiro, M. S., Caldana, C. & Hotta, C. T. Field microenvironments regulate crop diel transcript and metabolite rhythms. New Phytologist 232, 1738–1749 (2021).

Viana, A. J. C., Matiolli, C. C., Newman, D. W., Vieira, J. G. P., Duarte, G. T., Martins, M. C. M., Gilbault, E., Hotta, C. T., Caldana, C. & Vincentz, M. The sugar-responsive circadian clock regulator bZIP63 modulates plant growth. New Phytologist 231, 1875–1889 (2021).

Busso-Lopes, A. F., Carnielli, C. M., Winck, F. V., de Sa Patroni, F. M., Oliveira, A. K., Granato, D. C., Pereira E Costa, R. A., Domingues, R. R., Pauletti, B. A., Riano-Pachon, D. M., Aricetti, J., Caldana, C., Graner, E., Della Coletta, R., Dryden, K., Fox, J. W. & Paes Leme, A. F. A Reductionist Approach Using Primary and Metastatic Cell-Derived Extracellular Vesicles Reveals Hub Proteins Associated with Oral Cancer Prognosis. Molecular and Cellular Proteomics 20, (2021).

da Silva, V. C. H., Martins, M. C. M., Calderan-Rodrigues, M. J., Artins, A., Monte Bello, C. C., Gupta, S., Sobreira, T. J. P., Riano-Pachon, D. M., Mafra, V. & Caldana, C. Shedding Light on the Dynamic Role of the "Target of Rapamycin" Kinase in the Fast-Growing C-4 Species Setaria viridis, a Suitable Model for Biomass Crops. Frontiers in Plant Science 12, (2021).

Caldana, C., Martins, M. C. M., Mubeen, U. & Urrea-Castellanos, R. The magic 'hammer' of TOR: the multiple faces of a single pathway in the metabolic regulation of plant growth and development. Journal of Experimental Botany 70, 2217–2225 (2019).

Mubeen, U., Giavalisco, P. & Caldana, C. TOR inhibition interrupts the metabolic homeostasis by shifting the carbon-nitrogen balance in Chlamydomonas reinhardtii. Plant Signaling & Behavior 14, 1670595 (2019).

Webb, A. A. R., Seki, M., Satake, A. & Caldana, C. Continuous dynamic adjustment of the plant circadian oscillator. Nature Communications 10, (2019).

Ferreira, D. A., Martins, M. C. M., Cheavegatti-Gianotto, A., Carneiro, M. S., Amadeu, R. R., Aricetti, J. A., Wolf, L. D., Hoffmann, H. P., de Abreu, L. G. F. & Caldana, C. Metabolite Profiles of Sugarcane Culm Reveal the Relationship Among Metabolism and Axillary Bud Outgrowth in Genetically Related Sugarcane Commercial Cultivars. Frontiers in Plant Science 9, (2018).

Jueppner, J., Mubeen, U., Leisse, A., Caldana, C., Wiszniewski, A. A. G., Steinhauser, D. & Giavalisco, P. The target of rapamycin kinase affects biomass accumulation and cell cycle progression by altering carbon/nitrogen balance in synchronized Chlamydomonas reinhardtii cells. The Plant Journal 93, 355–376 (2018).

de Vries, R. P., Riley, R., Wiebenga, A., Aguilar-Osorio, G., Amillis, S., Uchima, C. A., Anderluh, G., Asadollahi, M., Askin, M., Barry, K., Battaglia, E., Bayram, O., Benocci, T., Braus-Stromeyer, S. A., Caldana, C., Canovas, D., Cerqueira, G. C., Chen, F., Chen, W., Choi, C., Clum, A., Correa dos Santos, R. A., de Lima Damasio, A. R., Diallinas, G., Emri, T., Fekete, E., Flipphi, M., Freyberg, S., Gallo, A., Gournas, C., Habgood, R., Hainaut, M., Laura Harispe, M., Henrissat, B., Hilden, K. S., Hope, R., Hossain, A., Karabika, E., Karaffa, L., Karanyi, Z., Krasevec, N., Kuo, A., Kusch, H., LaButti, K., Lagendijk, E. L., Lapidus, A., Levasseur, A., Lindquist, E., Lipzen, A., Logrieco, A. F., MacCabe, A., Makela, M. R., Malavazi, I., Melin, P., Meyer, V., Mielnichuk, N., Miskei, M., Molnar, A. P., Mule, G., Ngan, C. Y., Orejas, M., Orosz, E., Ouedraogo, J. P., Overkamp, K. M., Park, H.-S., Perrone, G., Piumi, F., Punt, P. J., Ram, A. F. J., Ramon, A., Rauscher, S., Record, E., Riano-Pachon, D. M., Robert, V., Roehrig, J., Ruller, R., Salamov, A., Salih, N. S., Samson, R. A., Sandor, E., Sanguinetti, M., Schutze, T., Sepcic, K., Shelest, E., Sherlock, G., Sophianopoulou, V., Squina, F. M., Sun, H., Susca, A., Todd, R. B., Tsang, A., Unkles, S. E., van de Wiele, N., van Rossen-Uffink, D., de Castro Oliveira, J. V., Vesth, T. C., Visser, J., Yu, J.-H., Zhou, M., Andersen, M. R., Archer, D. B., Baker, S. E., Benoit, I., Brakhage, A. A., Braus, G. H., Fischer, R., Frisvad, J. C., Goldman, G. H., Houbraken, J., Oakley, B., Pocsi, I., Scazzocchio, C., Seiboth, B., vanKuyk, P. A., Wortman, J., Dyer, P. S. & Grigoriev, I. V. Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. Genome Biology 18, (2017).