Publications of Z. Nikoloski

Journal Article (164)

Journal Article
Basler, G., Nikoloski, Z., Ebenhoeh, O. & Handorf, T. Biosynthetic potentials from species-specific metabolic networks. Genome Informatics 20, 135–148 (2008).
Journal Article
Brandes, U., Delling, D., Gaertler, M., Gorke, R., Hoefer, M., Nikoloski, Z. & Wagner, D. On modularity clustering. IEEE Transactions on Knowledge and Data Engineering 20, 172–188 (2008).
Journal Article
Nikoloski, Z., Grimbs, S., May, P. & Selbig, J. Metabolic networks are NP-hard to reconstruct. Journal of Theoretical Biology 254, 807–816 (2008).
Journal Article
Nikoloski, Z., Grimbs, S., Selbig, J. & Ebenhoeh, O. Hardness and Approximability of the Inverse Scope Problem. Algorithms in Bioinformatics, Wabi 2008 5251, 99–112 (2008).

Book Chapter (6)

Book Chapter
de Abreu e Lima, F., Leifels, L. & Nikoloski, Z. in Plant Metabolomics: Methods and Protocols (ed. António, C.) 321–327 (Humana Press, 2018). doi:10.1007/978-1-4939-7819-9_23
Book Chapter
Küken, A. & Nikoloski, Z. in Methods in Molecular Biology 1653, 195–202 (Elsevier, 2017).
Book Chapter
Omranian, N. & Nikoloski, Z. in Plant gene Regulatory Networks 1629, 283–295 (Springer, 2017).
Book Chapter
Kleessen, S. & Nikoloski, Z. in Molecular Mechanisms in Plant Adaptation 193–215 (Wiley-Blackwell, 2015). at <>
Book Chapter
Angeleska, A., Kleessen, S. & Nikoloski, Z. in Discrete and Topological Models in Molecular Biology (eds. Jonoska , N. & Saito, M.) 23–43 (Springer-Verlag, 2014). doi:10.1007/978-3-642-40193-0__2
Book Chapter
Redestig, H., Szymanski, J., Hirai, M. Y., Selbig, J., Willmitzer, L., Saito, K. & Nikoloski, Z. in Biology of Plant Metabolomics (ed. Hall, R. D.) (Wiley-Blackwell, 2011). doi:10.1002/9781444339956.ch9

Conference Paper (3)

Conference Paper
Sajitz-Hermstein, M. & Nikoloski, Z. Sensitivity of Contending Cellular Objectives in the Central Carbon Metabolism of Escherichia Coli. in Information Processing in Cells and Tissues 169–172 (2015). doi:10.1007/978-3-319-23108-2_14
Conference Paper
Larhlimi, A., Basler, G., Grimbs, S., Selbig, J. & Nikoloski, Z. Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks. in 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) I502–I508 (2012). doi:10.1093/bioinformatics/bts381
Conference Paper
Basler, G., Grimbs, S., Selbig, J. & Nikoloski, Z. Thermodynamic landscapes of randomized large-scale metabolic networks. in 7th International Workshop on Computational Systems Biology, WCSB 2010 23–26 (Tampere International Center for Signal Processing, 2010). at <>

Meeting Abstract (1)

Meeting Abstract
Arnold, A. & Nikoloski, Z. Design and analysis of a reference model of sugar phosphate metabolism. in (2010). at <>

Other (1)

van Dongen, J. T. & Nikoloski, Z. Modeling alternatives for interpreting the change in oxygen-consumption rates during hypoxic conditions. New Phytologist 190, 273–276 (2011).
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