Publications of S. Grimbs

Journal Article (12)

1.
Journal Article
Toepfer, N., Caldana, C., Grimbs, S., Willmitzer, L., Fernie, A. R. & Nikoloski, Z. Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis. The Plant Cell 25, 1197–1211 (2013).
2.
Journal Article
Neigenfind, J., Grimbs, S. & Nikoloski, Z. On the relation between reactions and complexes of (bio)chemical reaction networks. Journal of Theoretical Biology 317, 359–365 (2013).
3.
Journal Article
Basler, G., Grimbs, S. & Nikoloski, Z. Optimizing metabolic pathways by screening for feasible synthetic reactions. Biosystems 109, 186–191 (2012).
4.
Journal Article
Girbig, D., Grimbs, S. & Selbig, J. Systematic Analysis of Stability Patterns in Plant Primary Metabolism. PLoS One 7, e34686 (2012).
5.
Journal Article
Girbig, D., Selbig, J. & Grimbs, S. A MATLAB toolbox for structural kinetic modeling. Bioinformatics 28, 2546–2547 (2012).
6.
Journal Article
Basler, G., Grimbs, S., Ebenhoeh, O., Selbig, J. & Nikoloski, Z. Evolutionary significance of metabolic network properties. Journal of the Royal Society Interface 9, 1168–1176 (2011).
7.
Journal Article
Grimbs, S., Arnold, A., Koseka, A., Kurths, J., Selbig, J. & Nikoloski, Z. Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities. Biosystems 103, 212–223 (2011).
8.
Journal Article
Nikoloski, Z., Grimbs, S., Klie, S. & Selbig, J. Complexity of automated gene annotation. Biosystems 104, 1–8 (2011).
9.
Journal Article
Bulik, S., Grimbs, S., Huthmacher, C., Selbig, J. & Holzhuetter, H. G. Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws - a promising method for speeding up the kinetic modelling of complex metabolic networks. FEBS Journal 276, 410–424 (2009).
10.
Journal Article
Nikoloski, Z., Grimbs, S., May, P. & Selbig, J. Metabolic networks are NP-hard to reconstruct. Journal of Theoretical Biology 254, 807–816 (2008).
11.
Journal Article
Nikoloski, Z., Grimbs, S., Selbig, J. & Ebenhoeh, O. Hardness and Approximability of the Inverse Scope Problem. Algorithms in Bioinformatics, Wabi 2008 5251, 99–112 (2008).
12.
Journal Article
Grimbs, S., Selbig, J., Bulik, S., Holzhuetter, H. G. & Steuer, R. The stability and robustness of metabolic states: identifying stabilizing sites in metabolic networks. Molecular Systems Biology 3, 146 (2007).

Conference Paper (2)

13.
Conference Paper
Larhlimi, A., Basler, G., Grimbs, S., Selbig, J. & Nikoloski, Z. Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks. in 11th European Conference on Computational Biology (ECCB) / Conference of the Intelligent Systems in Molecular Biology (ISMB) I502–I508 (2012). doi:10.1093/bioinformatics/bts381
14.
Conference Paper
Basler, G., Grimbs, S., Selbig, J. & Nikoloski, Z. Thermodynamic landscapes of randomized large-scale metabolic networks. in 7th International Workshop on Computational Systems Biology, WCSB 2010 (eds. Nykter, M., Ruusuvuori, P., Carlberg, C. & Yli-Harja, O.) 23–26 (Tampere International Center for Signal Processing, 2010). at <http://hdl.handle.net/11858/00-001M-0000-0014-2463-2>
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