Publications of A. R. Fernie

Hayashi, K. & Fernie, A. R. Genomic evidence of a transposon-conferred adaptive response. Cell Reports 43, (2024).

Li, J., Martin, C. & Fernie, A. R. Biofortification’s contribution to mitigating micronutrient deficiencies. Nature Food 5, 19–27 (2024).

Lv, Y., Zhu, J., Huang, S., Xing, X., Zhou, S., Yao, H., Yang, Z., Liu, L., Huang, S., Miao, Y., Liu, X., Fernie, A. R., Ding, Y. & Luo, J. Metabolome profiling and transcriptome analysis filling the early crucial missing steps of piperine biosynthesis in Piper nigrum L. The Plant Journal 117, 107–120 (2024).

Karakas, E., Ferrante, P., Schafleitner, R., Giuliano, G., Fernie, A. R. & Alseekh, S. Plant Sample Collection and Shipment for Multi-omic Analyses and Phytosanitary Evaluation. Current Protocols 3, (2023).

Zhang, Y. J., Wiese, L., Fang, H., Alseekh, S., de Souza, L. P., Scossa, F., Molloy, J., Christmann, M. & Fernie, A. R. Synthetic biology identifies the minimal gene set required for Paclitaxel biosynthesis in a plant chassis. Molecular Plant 16, 1951–1961 (2023).

Artins, A. & Fernie, A. R. FCS-like zinc finger proteins maintain energy homeostasis during stresses. Trends in Plant Science 28, 1347–1349 (2023).

Barros, J. A. S., Cavalcanti, J. H. F., Pimentel, K. G., Magen, S., Soroka, Y., Weiss, S., Medeiros, D. B., Nunes-Nesi, A., Fernie, A. R., Avin-Wittenberg, T. & Araújo, W. L. The interplay between autophagy and chloroplast vesiculation pathways under dark-induced senescence. Plant, Cell and Environment 46, 3721–3736 (2023).

Bulut, M., Nunes-Nesi, A., Fernie, A. R. & Alseekh, S. Characterization of PetM cytochrome b6f subunit 7 domain-containing protein in tomato. Horticulture Research 10, (2023).

Duque-Jaramillo, A., Ulmer, N., Alseekh, S., Bezrukov, I., Fernie, A. R., Skirycz, A., Karasov, T. L. & Weigel, D. The genetic and physiological basis of Arabidopsis thaliana tolerance to Pseudomonas viridiflava. New Phytologist 240, 1961–1975 (2023).

Giese, J., Eirich, J., Walther, D., Zhang, Y. J., Lassowskat, I., Fernie, A. R., Elsässer, M., Maurino, V. G., Schwarzländer, M. & Finkemeier, I. The interplay of post-translational protein modifications in Arabidopsis leaves during photosynthesis induction. The Plant Journal 116, 1172–1193 (2023).

Qian, D., Xi, J., Nie, Y., Zou, M., Zhang, J., Alseekh, S., Fernie, A. R., Chen, J. & Huang, L. Chemical characterization of dicaffeoyl polyamine derivatives to understand specific secondary metabolites in goji berry. Journal of Food Composition and Analysis 122, (2023).

Vicente, M. H., MacLeod, K., Zhu, F., Rafael, D. D., Figueira, A., Fernie, A. R., Mohareb, F., Kevei, Z., Thompson, A. J., Zsögön, A. & Peres, L. E. P. The ORGAN SIZE (ORG) locus modulates both vegetative and reproductive gigantism in domesticated tomato. Annals of Botany 132, 1233–1248 (2023).

Aarabi, F., Ghigi, A., Wijesingha Ahchige, M., Bulut, M., Geigenberger, P., Neuhaus, H. E., Sampathkumar, A., Alseekh, S. & Fernie, A. R. Genome-Wide Association Study unveils ascorbate regulation by PAS/LOV PROTEIN during high light acclimation. Plant Physiology 193, 2037–2054 (2023).

Bulut, M., Wendenburg, R., Bitocchi, E., Bellucci, E., Kroc, M., Gioia, T., Susek, K., Papa, R., Fernie, A. R. & Alseekh, S. A Comprehensive Metabolomics and Lipidomics Atlas for the Legumes Common Bean, Chickpea, Lentil and Lupin. The Plant Journal 116, 1152–1171 (2023).

Fernie, A. R., Yan, J., Aharoni, A. & Ma, J. Editorial: The past, present and future of The Plant Journal Resource Articles. The Plant Journal 116, 967–973 (2023).

Li, C., Huang, W., Han, X., Zhao, G., Zhang, W., He, W., Nie, B., Chen, X., Zhang, T., Bai, W., Zhang, X., He, J., Zhao, C., Fernie, A. R., Tschaplinski, T. J., Yang, X., Yan, S. & Wang, L. Diel dynamics of multi-omics in elkhorn fern provide new insights into weak CAM photosynthesis. Plant Communications 4, (2023).

Shen, S., Wang, S., Yang, C., Wang, C., Zhou, Q., Zhou, S., Zhang, R., Li, Y., Wang, Z., Dai, L., Peng, W., Hao, Y., Guo, H., Cao, G., Liu, X., Yao, F., Xu, Q., Fernie, A. R. & Luo, J. Elucidation of the melitidin biosynthesis pathway in pummelo. Journal of Integrative Plant Biology 65, 2505–2518 (2023).

Su, C., Kokosza, A., Xie, X., Pěnčík, A., Zhang, Y. J., Raumonen, P., Shi, X., Muranen, S., Topcu, M. K., Immanen, J., Hagqvist, R., Safronov, O., Alonso-Serra, J., Eswaran, G., Venegas, M. P., Ljung, K., Ward, S., Mähönen, A. P., Himanen, K., Salojärvi, J., Fernie, A. R., Novák, O., Leyser, O., Pałubicki, W., Helariutta, Y. & Nieminen, K. Tree architecture: A strigolactone-deficient mutant reveals a connection between branching order and auxin gradient along the tree stem. Proceedings of the National Academy of Sciences of the United States of America 120, (2023).

von Bismarck, T., Wendering, P., de Souza, L. P., Ruß, J., Strandberg, L., Heyneke, E., Walker, B. J., Schöttler, M. A., Fernie, A. R., Nikoloski, Z. & Armbruster, U. Growth in fluctuating light buffers plants against photorespiratory perturbations. Nature Communications 14, (2023).

Zemach, I., Alseekh, S., Tadmor-Levi, R., Fisher, J., Torgeman, S., Trigerman, S., Nauen, J., Hayut, S. F., Mann, V., Rochsar, E., Finkers, R., Wendenburg, R., Osorio, S., Bergmann, S., Lunn, J. E., Semel, Y., Hirschberg, J., Fernie, A. R. & Zamir, D. Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity. The Plant Journal 116, 1136–1151 (2023).