Publications of A. R. Fernie

Fernie, A. R. Spotlight on “Proximity proteomics reveals a mechanism of fatty acid transfer at lipid droplet-mitochondria- endoplasmic reticulum contact sites” by Bezawork-Geleta et al. 2025. Journal of Mitochondria, Plastids and Endosymbiosis 3, (2025).

Karakas, E., Bulut, M. & Fernie, A. R. Metabolome guided treasure hunt - lerning from metabolic diversity. Journal of Plant Physiology 309, (2025).

da Luz, L. M., Valente, L. M. L., Medeiros, D. B., Batista-Silva, W., da Costa, L. C., Oliveira, F. S., Martins, S. C. V., Fernie, A. R., Nunes-Nesi, A. & Araújo, W. L. Functional lack of SLAC1 modifies guard cell metabolism without impacting photosynthesis under elevated [CO2] and moderated water restriction. Environmental and Experimental Botany 233, (2025).

Fernie, A. R. & Bulut, M. Design of future climate smart crops by engineering heat stress-responsive gene expression. Molecular Plant 18, 738–740 (2025).

Minen, R. I., Camalle, M. D., Schwertfeger, T. J., Abdulhakim, F., Reish, H., Perez de Souza, L., Moreno, J. C., Schilmiller, A., Thirumalaikumar, V. P., Agarwal, P., Plecki, C. F., Fernie, A. R., Hirt, H., Schroeder, F. C. & Skirycz, A. Characterization of the cyclic dipeptide cyclo(His-Pro) in Arabidopsis. Plant Physiology (2025). doi:10.1093/plphys/kiaf174

Wang, Z., He, Y., Zhao, M., Liu, X.-Q., Lin, H., Shi, Y., Zhang, K., Lei, G., Lai, D., Liu, T., Peng, X., He, J., Li, W., Wang, X., Woo, S.-H., Quinet, M., Fernie, A. R., Huang, X.-Y. & Zhou, M. Genome-Wide Association Studies Reveal the Genetic Architecture of Ionomic Variation in Grains of Tartary Buckwheat. Advanced Science 12, (2025).

Fernie, A. R. & Martinez-Rivas, F. Br(e)aking the tomato fruit size-sweetness trade-off. Trends in Plant Science 30, 350–351 (2025).

Fernie, A. R. & Zhu, F. Chemical disarmament in plant defense: Erucamide blocks bacterial type III injectisome assembly. Developmental Cell 60, 1140–1141 (2025).

Li, Y., Yang, Z., Li, K., Yang, C., Lei, L., Li, J., Zhou, J., Hou, H., Liu, H., Xiong, X., Zhan, C., Shen, S., Liu, X., Maher, M., Ahmad, H., Fernie, A. R. & Luo, J. Two major rice loci determine rice-staple food populations differences in vitamin B1 deficiency levels. Science Bulletin 70, 1046–1050 (2025).

Martins, A. O., Silva, W. A., Vallarino, J. G., Omena-Garcia, R. P., Osorio, S., Fernie, A. R., Nunes-Nesi, A., Ribeiro, D. M. & Araújo, W. L. Reductions of endogenous gibberellin content impact fruit development and modify tomato fruit metabolism during ripening. Plant Growth Regulation 105, 497–514 (2025).

Müller, C., dos Anjos, L., Freire, F. B. S., Fernie, A. R., Daloso, D. M., Eller, C. B. & Merchant, A. Metabolic network plasticity underpins Eucalyptus water use efficiency under drought. Environmental and Experimental Botany 232, (2025).

Raza, A., Anas, M., Bhardwaj, S., Mir, R. A., Charagh, S., Elahi, M., Zhang, X., Mir, R. R., Weckwerth, W., Fernie, A. R., Siddique, K. H. M., Hu, Z. & Varshney, R. K. Harnessing metabolomics for enhanced crop drought tolerance. The Crop Journal 13, 311–327 (2025).

Sweetlove, L. J., Ratcliffe, R. G. & Fernie, A. R. Non-canonical plant metabolism. Nature Plants 11, 696–708 (2025).

Tiozon, R. J. N., Zhang, C., Kim, S.-R., Liu, Q., Fernie, A. R. & Sreenivasulu, N. Unlocking the potential of wild rice to bring the missing nutrition to elite grains. Plant Communications (2025). doi:10.1016/j.xplc.2025.101344

Wu, S., Zhang, Y. J., Luzarowska, U., Yang, L., Salem, M. A., Thirumalaikumar , V. P., Sade, N., Galperin, V. E., Fernie, A. R., Sampathkumar, A., Bershtein, S., Fusari, C. M. & Brotman, Y. The homeostasis of β-alanine is key for Arabidopsis reproductive growth and development. The Plant Journal 122, (2025).

Decros, G. & Fernie, A. R. Spotlight on “Inhibition of mitochondrial energy production leads to reorganisation of the plant endomembrane system” by Wang et al. 2025. Journal of Mitochondria, Plastids and Endosymbiosis 3, (2025).

Decros, G., Zhang, Y. J. & Fernie, A. R. Mitochondrial support of high rates of photosynthesis. Plant Communications 6, (2025).

Omena-Garcia, R. P., Vallarino, J. G., da Fonseca-Pereira, P., Martins, A. O., Brandão, P. M., Ribeiro, D. M., Osorio, S., Fernie, A. R., Araújo, W. L. & Nunes-Nesi, A. Reciprocal grafting reveals the role of gibberellins in tomato root-shoot communication. Journal of Plant Physiology 306, (2025).

Qiu, Y., Liu, L., Yan, J., Xiang, X., Wang, S., Luo, Y., Deng, K., Xu, J., Jin, M., Wu, X., Liwei Cheng, Zhou, Y., Xie, W., Liu, H.-J., Fernie, A. R., Hu, X. & Yan, J. Precise engineering of gene expression by editing plasticity. Genome Biology 26, (2025).

Timm, S., Florian, A., Alseekh, S., Jahnke, K., Hagemann, M., Fernie, A. R. & Bauwe, H. Improved photorespiration has a major impact on the root metabolome of Arabidopsis. Physiologia Plantarum 177, (2025).