Publications of S. Alseekh

Alseekh, S., Kostova, D., Bulut, M. & Fernie, A. R. Genome-wide association studies: assessing trait characteristics in model and crop plants. Cellular and Molecular Life Sciences 78, 5743–5754 (2021).

Breitel, D., Brett, P., Alseekh, S., Fernie, A. R., Butelli, E. & Martin, C. Diverting tyrosine: Data from untargeted metabolic analysis of tomato fruit accumulating L-DOPA. Data in Brief 34, (2021).

Brotman, Y., Llorente-Wiegand, C., Oyong, G., Badoni, S., Misra, G., Anacleto, R., Parween, S., Pasion, E., Tiozon Jr., R. N., Anonuevo, J. J., Krishna deGuzman, M., Alseekh, S., Mbanjo, E. G. N., Boyd, L. A., Fernie, A. R. & Sreenivasulu, N. The genetics underlying metabolic signatures in a brown rice diversity panel and their vital role in human nutrition. The Plant Journal 106, 507–527 (2021).

Bulut, M., Fernie, A. R. & Alseekh, S. Large-scale Multi-omics Genome-wide Association Studies (Mo-GWAS): Guidelines for Sample Preparation and Normalization. Journal of Visualized Experiments 173, (2021).

Fernie, A. R., Alseekh, S., Liu, J. & Yan, J. Using Precision Phenotyping to Inform de novo Domestication. Plant Physiology 186, 1397–1411 (2021).

Jiang, L., Yoshida, T., Stiegert, S., Yu, J., Alseekh, S., Lenhard, M., Pérez-Alfocea, F. & Fernie, A. R. Multi-omics approach reveals the contribution of KLU to leaf longevity and drought tolerance. Plant Physiology 185, 352–368 (2021).

Jorge, T. F., Ramalho, J. C., Alseekh, S., Pais, I. P., Leitão, A. E., Rodrigues, A. P., Scotti-Campos, P., Ribeiro-Barros, A. I., Fernie, A. R. & António, C. Will Casuarina glauca Stress Resilience Be Maintained in the Face of Climate Change? Metabolites 11, (2021).

Krahmer, J., Abbas, A., Mengin, V., Ishihara, H., Romanowski, A., Furniss, J. J., Moraes, T. A., Krohn, N., Annunziata, M. G., Feil, R., Alseekh, S., Obata, T., Fernie, A. R., Stitt, M. & Halliday, K. J. Phytochromes control metabolic flux, and their action at the seedling stage determines adult plant biomass. Journal of Experimental Botany 72, 3263–3278 (2021).

Omidbakhshfard, M. A., Sokolowska, E., Di Vittori, V., de Souza, L. P., Kuhalskaya, A., Brotman, Y., Alseekh, S., Fernie, A. R. & Skirycz, A. Multi-omics analysis of early leaf development in Arabidopsis thaliana. Patterns 2, (2021).

Ren, Y., Li, M., Guo, S., Sun, H., Zhao, J., Zhang, J., Liu, G., He, H., Tian, S., Yu, Y., Gong, G., Zhang, H., Zhang, X., Alseekh, S., Fernie, A. R., Scheller, H. V. & Xu, Y. Evolutionary Gain of Oligosaccharide Hydrolysis and Sugar Transport Enhanced Carbohydrate Partitioning in Sweet Watermelon Fruits. The Plant Cell 33, 1554–1573 (2021).

Salem, M. A., Zayed, A., Alseekh, S., Fernie, A. R. & Giavalisco, P. The integration of MS-based metabolomics and multivariate data analysis allows for improved quality assessment of Zingiber officinale Roscoe. Phytochemistry 190, (2021).

Scossa, F., Alseekh, S. & Fernie, A. R. Integrating multi-omics data for crop improvement. Journal of Plant Physiology 257, (2021).

Staykov, N. S., Angelov, M., Petrov, V., Minkov, P., Kanojia, A., Guinan, K. J., Alseekh, S., Fernie, A. R., Sujeeth, N. & Gechev, T. S. An Ascophyllum nodosum-Derived Biostimulant Protects Model and Crop Plants from Oxidative Stress. Metabolites 11, (2021).

Di Vittori, V., Bitocchi, E., Rodriguez, M., Alseekh, S., Bellucci, E., Nanni, L., Gioia, T., Marzario, S., Logozzo, G., Rossato, M., De Quattro, C., Murgia, M. L., Ferreira, J. J., Campa, A., Xu, C., Fiorani, F., Sampathkumar, A., Fröhlich, A., Attene, G., Delledonne, M., Usadel, B., Fernie, A. R., Rau, D. & Papa, R. Pod indehiscence in common bean is associated to the fine regulation of PvMYB26. Journal of Experimental Botany 72, 1617–1633 (2020).

Sewelam, N., Brilhaus, D., Bräutigam, A., Alseekh, S., Fernie, A. R. & Maurino, V. G. Molecular plant responses to combined abiotic stresses put a spotlight on unknown and abundant genes. Journal of Experimental Botany 71, 5098–5112 (2020).

Aksenov, A. A., Laponogov, I., Zhang, Z., Doran, S. L. F., Belluomo, I., Veselkov, D., Bittremieux, W., Nothias, L. F., Nothias-Esposito, M., Maloney, K. N., Misra, B. B., Melnik, A. V., Smirnov, A., Du, X., Jones, K. L., Dorrestein, K., Panitchpakdi, M., Ernst, M., van der Hooft, J. J. J., Gonzalez, M., Carazzone, C., Amézquita, A., Callewaert, C., Morton, J. T., Quinn, R. A., Bouslimani, A., Orio, A. A., Petras, D., Smania, A. M., Couvillion, S. P., Burnet, M. C., Nicora, C. D., Zink, E., Metz, T. O., Artaev, V., Humston-Fulmer, E., Gregor, R., Meijler, M. M., Mizrahi, I., Eyal, S., Anderson, B., Dutton, R., Lugan, R., Boulch, P. L., Guitton, Y., Prevost, S., Poirier, A., Dervilly, G., Le Bizec, B., Fait, A., Persi, N. S., Song, C., Gashu, K., Coras, R., Guma, M., Manasson, J., Scher, J. U., Barupal, D. K., Alseekh, S., Fernie, A. R., Mirnezami, R., Vasiliou, V., Schmid, R., Borisov, R. S., Kulikova, L. N., Knight, R., Wang, M., Hanna, G. B., Dorrestein, P. C. & Veselkov, K. Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data. Nature Biotechnology 39, 169–173 (2020).

Alseekh, S., de Souza, L. P., Benina, M. & Fernie, A. R. The Style and Substance of Plant Flavonoid decoration; Towards Defining both Structure and Function. Phytochemistry 174, (2020).

Alseekh, S., Ofner, I., Liu, Z., Osorio, S., Vallarino, J. G., Last, R. L., Zamir, D., Tohge, T. & Fernie, A. R. Quantitative trait loci analysis (QTL) of seed specialized metabolites reveals seed-specific flavonols and differential regulation of glycoalkaloid content in tomato. The Plant Journal 103, 2007–2024 (2020).

Alseekh, S., Scossa, F. & Fernie, A. R. Mobile Transposable Elements Shape Plant Genome Diversity. Trends in Plant Science 25, 1062–1064 (2020).

Breitel, D., Brett, P., Alseekh, S., Fernie, A. R., Butelli, E. & Martin, C. Metabolic engineering of tomato fruit enriched in L-DOPA. Metabolic Engineering 65, 185–196 (2020).