Publications of J. Selbig

Meyer, R. C., Kusterer, B., Lisec, J., Steinfath, M., Becher, M., Scharr, H., Melchinger, A. E., Selbig, J., Schurr, U., Willmitzer, L. & Altmann, T. QTL analysis of early stage heterosis for biomass in Arabidopsis. Theoretical and Applied Genetics 120, 227–237 (2010).

Nikoloski, Z., May, P. & Selbig, J. Algebraic connectivity may explain the evolution of gene regulatory networks. Journal of Theoretical Biology 267, 7–14 (2010).

Riano-Pachon, D. M., Kleessen, S., Neigenfind, Durek, P., Weber, E., Engelsberger, W. R., Walther, D., Selbig, J., Schulze, W. X. & Kersten, B. Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana. BMC Genomics 11, 411 (2010).

Schwenk, B. B., Selbig, J., Ben-Zion, Y. & Holschneider, M. ExPlanes: exploring planes in triplet data. Journal of Integrative Bioinformatics 7, 132 (2010).

Steinfath, M., Gaertner, T., Lisec, J., Meyer, R. C., Altmann, T., Willmitzer, L. & Selbig, J. Prediction of hybrid biomass in Arabidopsis thaliana by selected parental SNP and metabolic markers. Theoretical and Applied Genetics 120, 239–247 (2010).

Steinfath, M., Strehmel, N., Peters, R., Schauer, N., Groth, D., Hummel, J., Steup, M., Selbig, J., Kopka, J., Geigenberger, P. & van Dongen, J. T. Discovering plant metabolic biomarkers for phenotype prediction using an untargeted approach. Plant Biotechnology Journal 8, 900–911 (2010).

Bulik, S., Grimbs, S., Huthmacher, C., Selbig, J. & Holzhuetter, H. G. Kinetic hybrid models composed of mechanistic and simplified enzymatic rate laws - a promising method for speeding up the kinetic modelling of complex metabolic networks. FEBS Journal 276, 410–424 (2009).

Durek, P., Schudoma, C., Weckwerth, W., Selbig, J. & Walther, D. Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 10, 117 (2009).

Gaertner, T., Steinfath, M., Andorf, S., Lisec, J., Meyer, R. C., Altmann, T., Willmitzer, L. & Selbig, J. Improved Heterosis Prediction by Combining Information on DNA- and Metabolic Markers. PLoS One 4, e5220 (2009).

Lisec, J., Steinfath, M., Meyer, R. C., Selbig, J., Melchinger, A. E., Willmitzer, L. & Altmann, T. Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations. Plant Journal 59, 777–788 (2009).

Sulpice, R., Pyl, E. T., Ishihara, H., Trenkamp, S., Steinfath, M., Witucka-Wall, H., Gibon, Y., Usadel, B., Poree, F., Piques, M. C., von Korff, M., Steinhauser, M.-C., Keurentjes, J. J. B., Guenther, M., Hoehne, M., Selbig, J., Fernie, A. R., Altmann, T. & Stitt, M. Starch as a major integrator in the regulation of plant growth. Proceedings of the National Academy of Sciences of the United States of America 106, 10348–10353 (2009).

Szymanski, J., Jozefczuk, S., Nikoloski, Z., Selbig, J., Nikiforova, V., Catchpole, G. & Willmitzer, L. Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli - A Systems Approach. PLoS One 4, e7441 (2009).

Dworschak, S., Grell, S., Nikiforova, V. J., Schaub, T. & Selbig, J. Modeling biological networks by action languages via answer set programming. Constraints 13, 21–65 (2008).

Heazlewood, J. L., Durek, P., Hummel, J., Selbig, J., Weckwerth, W., Walther, D. & Schulze, W. X. PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 36, D1015–D1021 (2008).

Koehl, K. I., Basler, G., Lüdemann, A., Selbig, J. & Walther, D. A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research. Plant Methods 4, 11 (2008).

Lisec, J., Meyer, R. C., Steinfath, M., Redestig, H., Becher, M., Witucka-Wall, H., Fiehn, O., Torjek, O., Selbig, J., Altmann, T. & Willmitzer, L. Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant Journal 53, 960–972 (2008).

Neigenfind, J., Gyetvai, G., Basekow, R., Diehl, S., Achenbach, U., Gebhardt, C., Selbig, J. & Kersten, B. Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT. BMC Genomics 9, 356 (2008).

Nikoloski, Z., Grimbs, S., May, P. & Selbig, J. Metabolic networks are NP-hard to reconstruct. Journal of Theoretical Biology 254, 807–816 (2008).

Nikoloski, Z., Grimbs, S., Selbig, J. & Ebenhoeh, O. Hardness and Approximability of the Inverse Scope Problem. Algorithms in Bioinformatics, Wabi 2008 5251, 99–112 (2008).

Schauer, N., Semel, Y., Balbo, I., Steinfath, M., Repsilber, D., Selbig, J., Pleban, T., Zamir, D. & Fernie, A. R. Mode of inheritance of primary metabolic traits in tomato. The Plant Cell 20, 509–523 (2008).