Publications of O. Ebenhoeh

Basler, G., Ebenhoeh, O., Selbig, J. & Nikoloski, Z. Mass-balanced randomization of metabolic networks. Bioinformatics 27, 1397–1403 (2011).

Basler, G., Grimbs, S., Ebenhoeh, O., Selbig, J. & Nikoloski, Z. Evolutionary significance of metabolic network properties. Journal of the Royal Society Interface 9, 1168–1176 (2011).

Schütte, M., Mutwil, M., Persson, S. & Ebenhöh, O. Analyzing gene coexpression data by an evolutionary model. Genome Informatics 24, 154–163 (2010).

Basler, G., Nikoloski, Z., Ebenhoeh, O. & Handorf, T. Biosynthetic potentials from species-specific metabolic networks. Genome Informatics 20, 135–148 (2008).

Handorf, T., Christian, N., Ebenhoeh, O. & Kahn, D. An environmental perspective on metabolism. Journal of Theoretical Biology 252, 530–537 (2008).

Kruse, K. & Ebenhoeh, O. Comparing flux balance analysis to network expansion: producibility, sustainability and the scope of compounds. Genome Informatics 20, 91–101 (2008).

Matthaeus, F., Salazar, C. & Ebenhoeh, O. Biosynthetic potentials of metabolites and their hierarchical organization. PLoS Computational Biology 4, e1000049 (2008).

May, P., Wienkoop, S., Kempa, S., Usadel, B., Christian, N., Rupprecht, J., Weiss, J., Recuenco-Munoz, L., Ebenhoeh, O., Weckwerth, W. & Walther, D. Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179, 157–166 (2008).

Nikoloski, Z., Grimbs, S., Selbig, J. & Ebenhoeh, O. Hardness and Approximability of the Inverse Scope Problem. Algorithms in Bioinformatics, Wabi 2008 5251, 99–112 (2008).

Christian, N., Handorf, T. & Ebenhoeh, O. Metabolic Synergy: Increasing Biosynthetic Capabilities by Network Cooperation. Genome Informatics 18, 320–329 (2007).

Handorf, T. & Ebenhoeh, O. MetaPath Online: a web server implementation of the network expansion algorithm. Nucleic Acids Research 35, W613–W618 (2007).

Binder, B., Ebenhoeh, O., Hashimoto, K. & Heinrich, R. Expansion of signal transduction networks. IEE Proceedings Systems Biology 153, 364–368 (2006).

Bruck, J., Ebenhoeh, O. & Heinrich, R. Patterns of interactions of reaction pairs in metabolic networks. Genome Informatics 17, 208–218 (2006).

Ebenhoeh, O., Handorf, T. & Kahn, D. Evolutionary changes of metabolic networks and their biosynthetic capacities. IEE Proceedings Systems Biology 153, 354–358 (2006).

Ebenhoeh, O. & Liebermeister, W. Structural analysis of expressed metabolic subnetworks. Genome Informatics 17, 163–172 (2006).

Handorf, T., Ebenhoeh, O., Kahn, D. & Heinrich, R. Hierarchy of metabolic compounds based on their synthesising capacity. IEE Proceedings Systems Biology 153, 359–363 (2006).

Ringemann, C., Ebenhoeh, O., Heinrich, R. & Ginsburg, H. Can biochemical properties serve as selective pressure for gene selection during inter-species and endosymbiotic lateral gene transfer? IEE Proceedings Systems Biology 153, 212–222 (2006).

Ebenhoeh, O., Handorf, T. & Heinrich, R. A cross species comparison of metabolic network functions. Genome Informatics 16, 203–213 (2005).

Handorf, T., Ebenhoeh, O. & Heinrich, R. Expanding metabolic networks: scopes of compounds, robustness, and evolution. Journal of Molecular Evolution 61, 498–512 (2005).

Ebenhoeh, O., Handorf, T. & Heinrich, R. Structural Analysis of Expanding Metabolic Networks. Genome Informatics 15, 35–45 (2004).