Publications of W. Weckwerth

Timm, S., Nunes-Nesi, A., Florian, A., Eisenhut, M., Morgenthal, K., Wirtz, M., Hell, R., Weckwerth, W., Hagemann, M., Fernie, A. R. & Bauwe, H. Metabolite Profiling in Arabidopsisthaliana with Moderately Impaired Photorespiration Reveals Novel Metabolic Links and Compensatory Mechanisms of Photorespiration. Metabolites 11, (2021).

Hoehenwarter, W., Larhlimi, A., Hummel, J., Egelhofer, V., Selbig, J., van Dongen, J. T., Wienkoop, S. & Weckwerth, W. MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber. Journal of Proteome Research 10, 2979–2991 (2011).

Joshi, H. J., Hirsch-Hoffmann, M., Baerenfaller, K., Gruissem, W., Baginsky, S., Schmidt, R., Schulze, W. X., Sun, Q., van Wijk, K. J., Egelhofer, V., Wienkoop, S., Weckwerth, W., Bruley, C., Rolland, N., Toyoda, T., Nakagami, H., Jones, A. M., Briggs, S. P., Castleden, I., Tanz, S. K., Millar, A. H. & Heazlewood, J. L. MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data. Plant Physiology 155, 259–270 (2011).

Chen, Y., Hoehenwarter, W. & Weckwerth, W. Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment. Plant Journal 63, 1–17 (2010).

Scherling, C., Roscher, C., Giavalisco, P., Schulze, E.-D. & Weckwerth, W. Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species. PLoS One 5, e12569 (2010).

Wienkoop, S., Weiss, J., May, P., Kempa, S., Irgang, S., Recuenco-Munoz, L., Pietzke, M., Schwemmer, T., Rupprecht, J., Egelhofer, V. & Weckwerth, W. Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses. Molecular Biosystems 6, 1018–1031 (2010).

Baessler, O. Y., Weiss, J., Wienkoop, S., Lehmann, K., Scheler, C., Dolle, S., Schwarz, D., Franken, P., George, E., Worm, M. & Weckwerth, W. Evidence for Novel Tomato Seed Allergens: IgE-Reactive Legumin and Vicilin Proteins Identified by Multidimensional Protein Fractionation-Mass Spectrometry and in Silico Epitope Modeling. Journal of Proteome Research 8, 1111–1122 (2009).

Durek, P., Schudoma, C., Weckwerth, W., Selbig, J. & Walther, D. Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 10, 117 (2009).

Ito, J., Taylor, N. L., Castleden, I., Weckwerth, W., Millar, A. H. & Heazlewood, J. L. A survey of the Arabidopsis thaliana mitochondrial phosphoproteome. Proteomics 9, 4229–4240 (2009).

Kempa, S., Hummel, J., Schwemmer, T., Pietzke, M., Strehmel, N., Wienkoop, S., Kopka, J. & Weckwerth, W. An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential C-13-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. Journal of Basic Microbiology 49, 82–91 (2009).

Larrainzar, E., Wienkoop, S., Scherling, C., Kempa, S., Ladrera, R., Arrese-Igor, C., Weckwerth, W. & Gonzalez, E. M. Carbon Metabolism and Bacteroid Functioning Are Involved in the Regulation of Nitrogen Fixation in Medicago truncatula Under Drought and Recovery. Molecular Plant-Microbe Interactions 22, 1565–1576 (2009).

Scherling, C., Ulrich, K., Ewald, D. & Weckwerth, W. A Metabolic Signature of the Beneficial Interaction of the Endophyte Paenibacillus sp Isolate and In Vitro-Grown Poplar Plants Revealed by Metabolomics. Molecular Plant-Microbe Interactions 22, 1032–1037 (2009).

Heazlewood, J. L., Durek, P., Hummel, J., Selbig, J., Weckwerth, W., Walther, D. & Schulze, W. X. PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 36, D1015–D1021 (2008).

Hoehenwarter, W., van Dongen, J. T., Wienkoop, S., Steinfath, M., Hummel, J., Erban, A., Sulpice, R., Regierer, B., Kopka, J., Geigenberger, P. & Weckwerth, W. A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8, 4214–4225 (2008).

Lehmann, U., Wienkoop, S., Tschoep, H. & Weckwerth, W. If the antibody fails - a mass Western approach. The Plant Journal 55, 1039–1046 (2008).

May, P., Wienkoop, S., Kempa, S., Usadel, B., Christian, N., Rupprecht, J., Weiss, J., Recuenco-Munoz, L., Ebenhoeh, O., Weckwerth, W. & Walther, D. Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179, 157–166 (2008).

Timm, S., Nunes-Nesi, A., Pamik, T., Morgenthal, K., Wienkoop, S., Keerberg, O., Weckwerth, W., Kleczkowski, L. A., Fernie, A. R. & Bauwe, H. A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis. The Plant Cell 20, 2848–2859 (2008).

Wienkoop, S., Morgenthal, K., Wolschin, F., Scholz, M., Selbig, J. & Weckwerth, W. Integration of metabolomic and proteomic phenotypes. Molecular & Cellular Proteomics 7, 1725–1736 (2008).

Engel, N., van den Daele, K., Kolukisaoglu, U., Morgenthal, K., Weckwerth, W., Parnik, T., Keerberg, O. & Bauwe, H. Deletion of glycine decarboxylase in arabidopsis is lethal under nonphotorespiratory conditions. Plant Physiology 144, 1328–1335 (2007).

Hummel, J., Niemann, M., Wienkoop, S., Schulze, W., Steinhauser, D., Selbig, J., Walther, D. & Weckwerth, W. ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites. BMC Bioinformatics 8, 216 (2007).