Publications of W. Weckwerth

Journal Article (56)

1.
Journal Article
Timm, S., Nunes-Nesi, A., Florian, A., Eisenhut, M., Morgenthal, K., Wirtz, M., Hell, R., Weckwerth, W., Hagemann, M., Fernie, A. R. & Bauwe, H. Metabolite Profiling in Arabidopsisthaliana with Moderately Impaired Photorespiration Reveals Novel Metabolic Links and Compensatory Mechanisms of Photorespiration. Metabolites 11, (2021).
2.
Journal Article
Hoehenwarter, W., Larhlimi, A., Hummel, J., Egelhofer, V., Selbig, J., van Dongen, J. T., Wienkoop, S. & Weckwerth, W. MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber. Journal of Proteome Research 10, 2979–2991 (2011).
3.
Journal Article
Joshi, H. J., Hirsch-Hoffmann, M., Baerenfaller, K., Gruissem, W., Baginsky, S., Schmidt, R., Schulze, W. X., Sun, Q., van Wijk, K. J., Egelhofer, V., Wienkoop, S., Weckwerth, W., Bruley, C., Rolland, N., Toyoda, T., Nakagami, H., Jones, A. M., Briggs, S. P., Castleden, I., Tanz, S. K., Millar, A. H. & Heazlewood, J. L. MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data. Plant Physiology 155, 259–270 (2011).
4.
Journal Article
Chen, Y., Hoehenwarter, W. & Weckwerth, W. Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment. Plant Journal 63, 1–17 (2010).
5.
Journal Article
Scherling, C., Roscher, C., Giavalisco, P., Schulze, E.-D. & Weckwerth, W. Metabolomics Unravel Contrasting Effects of Biodiversity on the Performance of Individual Plant Species. PLoS One 5, e12569 (2010).
6.
Journal Article
Wienkoop, S., Weiss, J., May, P., Kempa, S., Irgang, S., Recuenco-Munoz, L., Pietzke, M., Schwemmer, T., Rupprecht, J., Egelhofer, V. & Weckwerth, W. Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses. Molecular Biosystems 6, 1018–1031 (2010).
7.
Journal Article
Baessler, O. Y., Weiss, J., Wienkoop, S., Lehmann, K., Scheler, C., Dolle, S., Schwarz, D., Franken, P., George, E., Worm, M. & Weckwerth, W. Evidence for Novel Tomato Seed Allergens: IgE-Reactive Legumin and Vicilin Proteins Identified by Multidimensional Protein Fractionation-Mass Spectrometry and in Silico Epitope Modeling. Journal of Proteome Research 8, 1111–1122 (2009).
8.
Journal Article
Durek, P., Schudoma, C., Weckwerth, W., Selbig, J. & Walther, D. Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 10, 117 (2009).
9.
Journal Article
Ito, J., Taylor, N. L., Castleden, I., Weckwerth, W., Millar, A. H. & Heazlewood, J. L. A survey of the Arabidopsis thaliana mitochondrial phosphoproteome. Proteomics 9, 4229–4240 (2009).
10.
Journal Article
Kempa, S., Hummel, J., Schwemmer, T., Pietzke, M., Strehmel, N., Wienkoop, S., Kopka, J. & Weckwerth, W. An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential C-13-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. Journal of Basic Microbiology 49, 82–91 (2009).
11.
Journal Article
Larrainzar, E., Wienkoop, S., Scherling, C., Kempa, S., Ladrera, R., Arrese-Igor, C., Weckwerth, W. & Gonzalez, E. M. Carbon Metabolism and Bacteroid Functioning Are Involved in the Regulation of Nitrogen Fixation in Medicago truncatula Under Drought and Recovery. Molecular Plant-Microbe Interactions 22, 1565–1576 (2009).
12.
Journal Article
Scherling, C., Ulrich, K., Ewald, D. & Weckwerth, W. A Metabolic Signature of the Beneficial Interaction of the Endophyte Paenibacillus sp Isolate and In Vitro-Grown Poplar Plants Revealed by Metabolomics. Molecular Plant-Microbe Interactions 22, 1032–1037 (2009).
13.
Journal Article
Heazlewood, J. L., Durek, P., Hummel, J., Selbig, J., Weckwerth, W., Walther, D. & Schulze, W. X. PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Research 36, D1015–D1021 (2008).
14.
Journal Article
Hoehenwarter, W., van Dongen, J. T., Wienkoop, S., Steinfath, M., Hummel, J., Erban, A., Sulpice, R., Regierer, B., Kopka, J., Geigenberger, P. & Weckwerth, W. A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment. Proteomics 8, 4214–4225 (2008).
15.
Journal Article
Lehmann, U., Wienkoop, S., Tschoep, H. & Weckwerth, W. If the antibody fails - a mass Western approach. The Plant Journal 55, 1039–1046 (2008).
16.
Journal Article
May, P., Wienkoop, S., Kempa, S., Usadel, B., Christian, N., Rupprecht, J., Weiss, J., Recuenco-Munoz, L., Ebenhoeh, O., Weckwerth, W. & Walther, D. Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii. Genetics 179, 157–166 (2008).
17.
Journal Article
Timm, S., Nunes-Nesi, A., Pamik, T., Morgenthal, K., Wienkoop, S., Keerberg, O., Weckwerth, W., Kleczkowski, L. A., Fernie, A. R. & Bauwe, H. A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis. The Plant Cell 20, 2848–2859 (2008).
18.
Journal Article
Weckwerth, W. Integration of metabolomics and proteomics in molecular plant physiology - coping with the complexity by data-dimensionality reduction. Physiologia Plantarum 132, 176–189 (2008).
19.
Journal Article
Wienkoop, S., Morgenthal, K., Wolschin, F., Scholz, M., Selbig, J. & Weckwerth, W. Integration of metabolomic and proteomic phenotypes. Molecular & Cellular Proteomics 7, 1725–1736 (2008).
20.
Journal Article
Engel, N., van den Daele, K., Kolukisaoglu, U., Morgenthal, K., Weckwerth, W., Parnik, T., Keerberg, O. & Bauwe, H. Deletion of glycine decarboxylase in arabidopsis is lethal under nonphotorespiratory conditions. Plant Physiology 144, 1328–1335 (2007).
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