Publications of YJ Zhang

Amanda, D., Frey, F. P., Neumann, U., Przybyl, M., Šimura, J., Zhang, Y. J., Chen, Z., Gallavotti, A., Fernie, A. R., Ljung, K. & Acosta, I. F. Auxin boosts energy generation pathways to fuel pollen maturation in barley. Current Biology 32, 1798–1811 (2022).

Fernie, A. R. & Zhang, Y. J. The Bacillus subtilis glutamate anti-metabolon. Nature Metabolism 4, 161–162 (2022).

Qin, K., Fernie, A. R. & Zhang, Y. J. The assembly of super-complexes in the plant chloroplast. Biomolecules 11, (2021).

Aarabi, F., Rakpenthai, A., Barahimipour, R., Gorka, M., Alseekh, S., Zhang, Y. J., Salem, M. A., Brückner, F., Omranian, N., Watanabe, M., Nikoloski, Z., Giavalisco, P., Tohge, T., Graf, A., Fernie, A. R. & Hoefgen, R. Sulfur Deficiency Induced genes affect seed protein accumulation and composition under sulfate deprivation. Plant Physiology 187, 2419–2434 (2021).

Zhang, Y. J., Scossa, Federico, F. & Fernie, A. R. The genomes of Taxus species unveil novel candidates in the biosynthesis of taxoids. Molecular Plant 14, 1773–1775 (2021).

Moreno, J. C., Rojas, B. E., Vicente, R., Gorka, M., Matz, T., Kosmacz, M., Peralta-Ariza, J. S., Zhang, Y. J., Alseekh, S., Childs, D., Luzarowski, M., Nikoloski, Z., Zarivach, R., Walther, D., Hartman, M. D., Figueroa, C. M., Iglesias, A. A., Fernie, A. R. & Skirycz, A. Tyr-Asp inhibition of glyceraldehyde 3-phosphate dehydrogenase affects plant redox metabolism. EMBO Journal 40, (2021).

Zhang, Y. J., Giese, J., Kerbler, S. M.-L., Siemiatkowska, B., de Souza, L. P., Alpers, J., Medeiros, D. B., Hincha, D. K., Daloso, D. M., Stitt, M., Finkemeier, I. & Fernie, A. R. Two mitochondrial phosphatases, PP2c63 and Sal2, are required for posttranslational regulation of the TCA cycle in Arabidopsis. Molecular Plant 14, 1104–1118 (2021).

Cervela-Cardona, L., Yoshida, T., Zhang, Y. J., Okada, M., Fernie, A. R. & Mas, P. Circadian Control of Metabolism by the Clock Component TOC1. Frontiers in Plant Science 12, (2021).

Kerbler, S. M.-L., Natale, R., Fernie, A. R. & Zhang, Y. J. From Affinity to Proximity Techniques to Investigate Protein Complexes in Plants. International Journal of Molecular Sciences 22, (2021).

Pereira, L., Sapkota, M., Alonge, M., Zheng, Y., Zhang, Y. J., Razifard, H., Taitano, N. K., Schatz, M. C., Fernie, A. R., Wang, Y., Fei, Z., Caicedo, A. L., Tieman, D. M. & van der Knaap, E. Natural Genetic Diversity in Tomato Flavor Genes. Frontiers in Plant Science 12, (2021).

Chen, M.-X., Zhang, Y. J., Fernie, A. R., Liu, Y.-G. & Zhu, F.-Y. SWATH-MS-Based Proteomics: Strategies and Applications in Plants. Trends in Biotechnology 39, 433–437 (2020).

Chen, M.-X., Zhu, F.-Y., Gao, B., Ma, K.-L., Zhang, Y. J., Fernie, A. R., Chen, X., Dai, L., Ye, N.-H., Zhang, X., Tian, Y., Zhang, D., Xiao, S., Zhang, J. & Liu, Y.-G. Full-length transcript-based proteogenomics of rice improves its genome and proteome annotation. Plant Physiology 182, 1510–1526 (2020).

Fernie, A. R., Zhang, Y. J. & Sampathkumar, A. Cytoskeleton Architecture Regulates Glycolysis Coupling Cellular Metabolism to Mechanical Cues. Trends in biochemical sciences 45, 637–638 (2020).

Tohge, T., Scossa, F., Wendenburg, R., Frasse, P., Balbo, I., Watanabe, M., Alseekh, S., Jadha, S. S., Delfin, J. C., Lohse, M., Giavalisco, P., Usadel, B., Zhang, Y. J., Luo, J., Bouzayen, M. & Fernie, A. R. Exploiting natural variation in tomato to define pathway structure and metabolic regulation of fruit polyphenolics in the lycopersicum complex. Molecular Plant 13, 1027–1046 (2020).

Zhang, Y. J., Chen, M., Siemiatkowska, B., Toleco, M. R., Jing, Y., Strotmann, V., Zhang, J., Stahl, Y. & Fernie, A. R. A Highly Efficient Agrobacterium-Mediated Method for Transient Gene Expression and Functional Studies in Multiple Plant Species. Plant Communications 1, (2020).

Zhang, Y. J. & Fernie, A. R. On the Detection and Functional Significance of the Protein–Protein Interactions of Mitochondrial Transport Proteins. Biomolecules 10, (2020).

Zhang, Y. J. & Fernie, A. R. Resolving the metabolon: is the proof in the metabolite? EMBO Reports 21, (2020).

Zhang, Y. J., Krahnert, I., Bolze, A., Gibon, Y. & Fernie, A. R. Adenine Nucleotide and Nicotinamide Adenine Dinucleotide Measurements in Plants. Current Protocols in Plant Biology 5, (2020).

Zhang, Y. J., Sampathkumar, A., Kerbler, S. M.-L., Swart, C., Hille, C., Seerangan, K., Graf, A., Sweetlove, L. & Fernie, A. R. A moonlighting role for enzymes of glycolysis in the co-localization of mitochondria and chloroplasts. Nature Communications 11, (2020).

Zhang, Y. J., Skirycz, A. & Fernie, A. R. An Abundance and Interaction Encyclopedia of Plant Protein Function. Trends in Plant Science 25, 627–630 (2020).