All Publications

2701.

Journal Article

Cuadros-Inostroza, A.; Caldana, C.; Redestig, H.; Kusano, M.; Lisec, J.; Pena-Cortes, H.; Willmitzer, L.; Hannah, M. A.: TargetSearch - a Bioconductor package for the efficient preprocessing of GC-MS metabolite profiling data. BMC Bioinformatics 10, p. 428 (2009)

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2702.

Journal Article

DeBolt, S.; Scheible, W.-R.; Schrick, K.; Auer, M.; Beisson, F.; Bischoff, V.; Bouvier-Nave, P.; Carroll, A.; Hematy, K.; Li, Y. H. et al.; Milne, J.; Nair, M.; Schaller, H.; Zemla, M.; Somerville, C.: Mutations in UDP-Glucose:Sterol Glucosyltransferase in Arabidopsis Cause Transparent Testa Phenotype and Suberization Defect in Seeds. Plant Physiology 151 (1), pp. 78 - 87 (2009)

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2703.

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Degenkolbe, T.; Do, P. T.; Zuther, E.; Repsilber, D.; Walther, D.; Hincha, D. K.; Koehl, K. I.: Expression profiling of rice cultivars differing in their tolerance to long-term drought stress. Plant Molecular Biology 69 (1-2), pp. 133 - 153 (2009)

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2704.

Journal Article

Dita, M. A.; Die, J. V.; Roman, B.; Krajinski, F.; Kuester, H.; Moreno, M. T.; Cubero, J. I.; Rubiales, D.: Gene expression profiling of Medicago truncatula roots in response to the parasitic plant Orobanche crenata. Weed Research 49, pp. 66 - 80 (2009)

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2705.

Journal Article

Durek, P.; Schudoma, C.; Weckwerth, W.; Selbig, J.; Walther, D.: Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins. BMC Bioinformatics 10, p. 117 (2009)

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2706.

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Fernie, A. R.; Martinoia, E.: Malate. Jack of all trades or master of a few? Phytochemistry 70 (7), pp. 828 - 832 (2009)

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2707.

Journal Article

Fuehrs, H.; Goetze, S.; Specht, A.; Erban, A.; Gallien, S.; Heintz, D.; van Dorsselaer, A.; Kopka, J.; Braun, H. P.; Horst, W. J.: Characterization of leaf apoplastic peroxidases and metabolites in Vigna unguiculata in response to toxic manganese supply and silicon. Journal of Experimental Botany 60 (6), pp. 1663 - 1678 (2009)

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2708.

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Gaertner, T.; Steinfath, M.; Andorf, S.; Lisec, J.; Meyer, R. C.; Altmann, T.; Willmitzer, L.; Selbig, J.: Improved Heterosis Prediction by Combining Information on DNA- and Metabolic Markers. PLoS One 4 (4), p. e5220 (2009)

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2709.

Journal Article

Gajdanowicz, P.; Garcia-Mata, C.; Gonzalez, W.; Morales-Navarro, S. E.; Sharma, T.; Gonzalez-Nilo, F. D.; Gutowicz, J.; Mueller-Roeber, B.; Blatt, M. R.; Dreyer, I.: Distinct roles of the last transmembrane domain in controlling Arabidopsis K+ channel activity. New Phytologist 182 (2), pp. 380 - 391 (2009)

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2710.

Journal Article

Giavalisco, P.; Koehl, K. I.; Hummel, J.; Seiwert, B.; Willmitzer, L.: 13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research. Analytical Chemistry 81 (15), pp. 6546 - 6551 (2009)

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2711.

Journal Article

Gibon, Y.; Pyl, E. T.; Sulpice, R.; Lunn, J. E.; Hoehne, M.; Guenther, M.; Stitt, M.: Adjustment of growth, starch turnover, protein content and central metabolism to a decrease of the carbon supply when Arabidopsis is grown in very short photoperiods. Plant Cell and Environment 32 (7), pp. 859 - 874 (2009)

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2712.

Journal Article

Gilbert, L.; Alhagdow, M.; Nunes-Nesi, A.; Quemener, B.; Guillon, F.; Bouchet, B.; Faurobert, M.; Gouble, B.; Page, D.; Garcia, V. et al.; Petit, J.; Stevens, R.; Causse, M.; Fernie, A. R.; Lahaye, M.; Rothan, C.; Baldet, P.: GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato. The Plant Journal 60 (3), pp. 499 - 508 (2009)

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2713.

Journal Article

Gille, S.; Hansel, U.; Ziemann, M.; Pauly, M.: Identification of plant cell wall mutants by means of a forward chemical genetic approach using hydrolases. Proceedings of the National Academy of Sciences of the United States of America 106 (34), pp. 14699 - 14704 (2009)

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2714.

Journal Article

Gruber, V.; Blanchet, S.; Diet, A.; Zahaf, O.; Boualem, A.; Kakar, K.; Alunni, B.; Udvardi, M. K.; Frugier, F.; Crespi, M.: Identification of transcription factors involved in root apex responses to salt stress in Medicago truncatula. Molecular Genetics and Genomics 281 (1), pp. 55 - 66 (2009)

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2715.

Journal Article

Guenther, S.; von Eichborn, J.; May, P.; Preissner, R.: JAIL: a structure-based interface library for macromolecules. Nucleic Acids Research 37 (Database issue), pp. 338 - 341 (2009)

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2716.

Journal Article

Guether, M.; Balestrini, R.; Hannah, M. A.; He, J.; Udvardi, M. K.; Bonfante, P.: Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus. New Phytologist 182 (1), pp. 200 - 212 (2009)

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2717.

Journal Article

Gutjahr, C.; Novero, M.; Guether, M.; Montanari, O.; Udvardi, M. K.; Bonfante, P.: Presymbiotic factors released by the arbuscular mycorrhizal fungus Gigaspora margarita induce starch accumulation in Lotus japonicus roots. New Phytologist 183 (1), pp. 53 - 61 (2009)

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2718.

Journal Article

Gutjahr, C.; Novero, M.; Guether, M.; Montanari, O.; Udvardi, M.; Bonfante, P.: Presymbiotic factors released by the arbuscular mycorrhizal fungus Gigaspora margarita induce starch accumulation in Lotus japonicus roots. New Phytologist 183 (1), pp. 53 - 61 (2009)

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2719.

Journal Article

Hannemann, J.; Poorter, H.; Usadel, B.; Blaesing, O. E.; Finck, A.; Tardieu, F.; Atkin, O. K.; Pons, T.; Stitt, M.; Gibon, Y.: Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy. Plant Cell and Environment 32 (9), pp. 1185 - 1200 (2009)

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2720.

Journal Article

Heide, H.; Nordhues, A.; Drepper, F.; Nick, S.; Schulz-Raffelt, M.; Haehnel, W.; Schroda, M.: Application of quantitative immunoprecipitation combined with knockdown and cross-linking to Chlamydomonas reveals the presence of vesicle-inducing protein in plastids 1 in a common complex with chloroplast HSP90C. Proteomics 9 (11), pp. 3079 - 3089 (2009)

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2721.

Journal Article

Hernandez, G.; Valdes-Lopez, O.; Ramirez, M.; Goffard, N.; Weiller, G.; Aparicio-Fabre, R.; Fuentes, S. I.; Erban, A.; Kopka, J.; Udvardi, M. K. et al.; Vance, C. P.: Global Changes in the Transcript and Metabolic Profiles during Symbiotic Nitrogen Fixation in Phosphorus-Stressed Common Bean Plants. Plant Physiology 151 (3), pp. 1221 - 1238 (2009)

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2722.

Journal Article

Holzl, G.; Witt, S.; Gaude, N.; Melzer, M.; Schöttler, M. A.; Doermann, P.: The Role of Diglycosyl Lipids in Photosynthesis and Membrane Lipid Homeostasis in Arabidopsis. Plant Physiology 150 (3), pp. 1147 - 1159 (2009)

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2723.

Journal Article

Howell, K. A.; Narsai, R.; Carroll, A.; Ivanova, A.; Lohse, M.; Usadel, B.; Millar, A. H.; Whelan, J.: Mapping Metabolic and Transcript Temporal Switches during Germination in Rice Highlights Specific Transcription Factors and the Role of RNA Instability in the Germination Process. Plant Physiology 149 (2), pp. 961 - 980 (2009)

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2724.

Journal Article

Ito, J.; Taylor, N. L.; Castleden, I.; Weckwerth, W.; Millar, A. H.; Heazlewood, J. L.: A survey of the Arabidopsis thaliana mitochondrial phosphoproteome. Proteomics 9 (17), pp. 4229 - 4240 (2009)

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2725.

Journal Article

Janacek, S. H.; Trenkamp, S.; Palmer, B.; Brown, N. J.; Parsley, K.; Stanley, S.; Astley, H. M.; Rolfe, S. A.; Quick, W. P.; Fernie, A. R. et al.; Hibberd, J. M.: Photosynthesis in cells around veins of the C-3 plant Arabidopsis thaliana is important for both the shikimate pathway and leaf senescence as well as contributing to plant fitness. The Plant Journal 59 (2), pp. 329 - 343 (2009)

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2726.

Journal Article

Karcher, D.; Bock, R.: Identification of the chloroplast adenosine-to-inosine tRNA editing enzyme. RNA 15 (7), pp. 1251 - 1257 (2009)

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2727.

Journal Article

Karcher, D.; Koester, D.; Schadach, A.; Klevesath, A.; Bock, R.: The Chlamydomonas Chloroplast HLP Protein Is Required for Nucleoid Organization and Genome Maintenance. Molecular Plant 2 (6), pp. 1223 - 1232 (2009)

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2728.

Journal Article

Kartal, O.; Ebenhoeh, O.: Ground State Robustness as an Evolutionary Design Principle in Signaling Networks. PLoS One 4 (12), p. e8001 (2009)

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2729.

Journal Article

Kempa, S.; Hummel, J.; Schwemmer, T.; Pietzke, M.; Strehmel, N.; Wienkoop, S.; Kopka, J.; Weckwerth, W.: An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential C-13-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells. Journal of Basic Microbiology 49 (1), pp. 82 - 91 (2009)

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2730.

Journal Article

Keurentjes, J. J.; Sulpice, R.: The role of natural variation in dissecting genetic regulation of primary metabolism. Plant Signaling & Behavior 4 (3), pp. 244 - 246 (2009)

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2731.

Journal Article

Kierszniowska, S.; Seiwert, B.; Schulze, W. X.: Definition of Arabidopsis Sterol-rich Membrane Microdomains by Differential Treatment with Methyl-beta-cyclodextrin and Quantitative Proteomics. Molecular & Cellular Proteomics 8 (4), pp. 612 - 623 (2009)

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2732.

Journal Article

Kierszniowska, S.; Walther, D.; Schulze, W. X.: Ratio-dependent significance thresholds in reciprocal N-15-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment. Proteomics 9 (7), pp. 1916 - 1924 (2009)

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2733.

Journal Article

Kim, J. A.; Cho, K.; Singh, R.; Jung, Y. H.; Jeong, S. H.; Kim, S. H.; Lee, J. E.; Cho, Y. S.; Agrawal, G. K.; Rakwal, R. et al.; Tamogami, S.; Kersten, B.; Jeon, J. S.; An, G.; Jwa, N. S.: Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance. Molecules and Cells 28 (5), pp. 431 - 439 (2009)

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2734.

Journal Article

Kohl, S.; Bock, R.: Transposition of a bacterial insertion sequence in chloroplasts. Plant Journal 58 (3), pp. 423 - 436 (2009)

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2735.

Journal Article

Krall, L.; Huege, J.; Catchpole, G.; Steinhauser, D.; Willmitzer, L.: Assessment of sampling strategies for gas chromatography-mass spectrometry (GC-MS) based metabolomics of cyanobacteria. Journal of Chromatography B-Analytical Technologies in the Biomedical and Life Sciences 877 (27), pp. 2952 - 2960 (2009)

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2736.

Journal Article

Kreuzwieser, J.; Hauberg, J.; Howell, K. A.; Carroll, A.; Rennenberg, H.; Millar, A. H.; Whelan, J.: Differential Response of Gray Poplar Leaves and Roots Underpins Stress Adaptation during Hypoxia. Plant Physiology 149 (1), pp. 461 - 473 (2009)

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2737.

Journal Article

Krueger, S.; Niehl, A.; Martin, M. C.; Steinhauser, D.; Donath, A.; Hildebrandt, T.; Romero, L. C.; Hoefgen, R.; Gotor, C.; Hesse, H.: Analysis of cytosolic and plastidic serine acetyltransferase mutants and subcellular metabolite distributions suggests interplay of the cellular compartments for cysteine biosynthesis in Arabidopsis. Plant Cell and Environment 32 (4), pp. 349 - 367 (2009)

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2738.

Journal Article

Lanquar, V.; Loque, D.; Hormann, F.; Yuan, L. X.; Bohner, A.; Engelsberger, W. R.; Lalonde, S.; Schulze, W. X.; von Wiren, N.; Frommer, W. B.: Feedback Inhibition of Ammonium Uptake by a Phospho-Dependent Allosteric Mechanism in Arabidopsis. Plant Cell 21 (11), pp. 3610 - 3622 (2009)

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2739.

Journal Article

Larrainzar, E.; Wienkoop, S.; Scherling, C.; Kempa, S.; Ladrera, R.; Arrese-Igor, C.; Weckwerth, W.; Gonzalez, E. M.: Carbon Metabolism and Bacteroid Functioning Are Involved in the Regulation of Nitrogen Fixation in Medicago truncatula Under Drought and Recovery. Molecular Plant-Microbe Interactions 22 (12), pp. 1565 - 1576 (2009)

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2740.

Journal Article

Lehmann, M.; Schwarzlander, M.; Obata, T.; Sirikantaramas, S.; Burow, M.; Olsen, C. E.; Tohge, T.; Fricker, M. D.; Moller, B. L.; Fernie, A. R. et al.; Sweetlove, L. J.; Laxa, M.: The Metabolic Response of Arabidopsis Roots to Oxidative Stress is Distinct from that of Heterotrophic Cells in Culture and Highlights a Complex Relationship between the Levels of Transcripts, Metabolites, and Flux. Molecular Plant 2 (3), pp. 390 - 406 (2009)

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2741.

Journal Article

Lippold, F.; Sanchez, D. H.; Musialak-Lange, M.; Schlereth, A.; Scheible, W.-R.; Hincha, D. K.; Udvardi, M. K.: AtMyb41 Regulates Transcriptional and Metabolic Responses to Osmotic Stress in Arabidopsis. Plant Physiology 149 (4), pp. 1761 - 1772 (2009)

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2742.

Journal Article

Lisec, J.; Steinfath, M.; Meyer, R. C.; Selbig, J.; Melchinger, A. E.; Willmitzer, L.; Altmann, T.: Identification of heterotic metabolite QTL in Arabidopsis thaliana RIL and IL populations. Plant Journal 59 (5), pp. 777 - 788 (2009)

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2743.

Journal Article

Liu, Y. J.; Nunes-Nesi, A.; Wallstrom, S. V.; Lager, I.; Michalecka, A. M.; Norberg, F. E. B.; Widell, S.; Fredlund, K. M.; Fernie, A. R.; Rasmusson, A. G.: A Redox-Mediated Modulation of Stem Bolting in Transgenic Nicotiana sylvestris Differentially Expressing the External Mitochondrial NADPH Dehydrogenase. Plant Physiology 150 (3), pp. 1248 - 1259 (2009)

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2744.

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Lugan, R.; Niogret, M. F.; Kervazo, L.; Larher, F. R.; Kopka, J.; Bouchereau, A.: Metabolome and water status phenotyping of Arabidopsis under abiotic stress cues reveals new insight into ESK1 function. Plant Cell and Environment 32 (2), pp. 95 - 108 (2009)

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2745.

Journal Article

Lytovchenko, A.; Beleggia, R.; Schauer, N.; Isaacson, T.; Leuendorf, J. E.; Hellmann, H.; Rose, J. K. C.; Fernie, A. R.: Application of GC-MS for the detection of lipophilic compounds in diverse plant tissues. Plant Methods 5, p. 4 (2009)

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2746.

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Marchive, C.; Yehudai-Resheff, S.; Germain, A.; Fei, Z. J.; Jiang, X. S.; Judkins, J.; Wu, H.; Fernie, A. R.; Fait, A.; Stern, D. B.: Abnormal Physiological and Molecular Mutant Phenotypes Link Chloroplast Polynucleotide Phosphorylase to the Phosphorus Deprivation Response in Arabidopsis. Plant Physiology 151 (2), pp. 905 - 924 (2009)

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2747.

Journal Article

Michalska, J.; Zauber, H.; Buchanan, B. B.; Cejudo, F. J.; Geigenberger, P.: NTRC links built-in thioredoxin to light and sucrose in regulating starch synthesis in chloroplasts and amyloplasts. Proceedings of the National Academy of Sciences of the United States of America 106 (24), pp. 9908 - 9913 (2009)

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2748.

Journal Article

Mrosk, C.; Forner, S.; Hause, G.; Kuester, H.; Kopka, J.; Hause, B.: Composite Medicago truncatula plants harbouring Agrobacterium rhizogenes-transformed roots reveal normal mycorrhization by Glomus intraradices. Journal of Experimental Botany 60 (13), pp. 3797 - 3807 (2009)

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2749.

Journal Article

Mutwil, M.; Ruprecht, C.; Giorgi, F. M.; Bringmann, M.; Usadel, B.; Persson, S.: Transcriptional Wiring of Cell Wall-Related Genes in Arabidopsis. Molecular Plant 2 (5), pp. 1015 - 1024 (2009)

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2750.

Journal Article

Myakushina, Y. A.; Milyaeva, E. L.; Romanov, G. A.; Nikiforova, V. Y.: Mutation in LSU4 gene affects flower development in Arabidopsis thaliana. Doklady Biochemistry and Biophysics 428 (1), pp. 257 - 260 (2009)

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Journal Article (4079)