Journal Article (124)

Journal Article
Schulze, W. X.; Deng, L.; Mann, M.: Phosphotyrosine interactome of the ErbB-receptor kinase family. Molecular Systems Biology 1, pp. 2005 - 2008 (2005)
Journal Article
Schulze, W. X.; Gleixner, G.; Kaiser, K.; Guggenberger, G.; Mann, M.; Schulze, E.-D.: A proteomic fingerprint of dissolved organic carbon and of soil particles. Oecologia 142 (3), pp. 335 - 343 (2005)
Journal Article
Sharma, R. K.; Bock, R.; Bansal, K. C. (.c.: Plastid transformation: Safer alternative to transgenic plants. Physiology and Molecular Biology of Plants 11 (2), pp. 179 - 185 (2005)
Journal Article
Skirycz, A.; Widrych, A.; Szopa, J.: Expression of human dopamine receptor in potato (Solanum tuberosum) results in altered tuber carbon metabolism. BMC Plant Biology 5, 1 (2005)
Journal Article
Steffen, R.; Kelly, A. A.; Huyer, J.; Doermann, P.; Renger, G.: Investigations on the reaction pattern of photosystem II in leaves from Arabidopsis thaliana wild type plants and mutants with genetically modified lipid content. Biochemistry 44 (9), pp. 3134 - 3142 (2005)
Journal Article
Studart-Guimaraes, C.; Gibon, Y.; Frankel, N.; Wood, C. C.; Zanor, M. I.; Fernie, A. R.; Carrari, F.: Identification and characterisation of the alpha and beta subunits of succinyl CoA ligase of tomato. Plant Molecular Biology 59 (5), pp. 781 - 791 (2005)
Journal Article
Sweetlove, L. J.; Fernie, A. R.: Regulation of metabolic networks: understanding metabolic complexity in the systems biology era. New Phytologist 168 (1), pp. 9 - 23 (2005)
Journal Article
Thieme, F.; Koebnik, R.; Bekel, T.; Berger, C.; Boch, J.; Buttner, D.; Caldana, C.; Gaigalat, L.; Goesmann, A.; Kay, S. et al.; Kirchner, O.; Lanz, C.; Linke, B.; McHardy, A.; Meyer, F.; Mittenhuber, G.; Nies, D.; Niesbach-Klosgen, U.; Patschkowski, T.; Ruckert, C.; Rupp, O.; Schneiker, S.; Schuster, S.; Vorholter, F.; Weber, E.; Puhler, A.; Bonas, U.; Bartels, D.; Kaiser, O.: Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence. Journal of Bacteriology 187 (21), pp. 7254 - 7266 (2005)
Journal Article
Udvardi, M. K.; Tabata, S.; Parniske, M.; Stougaard, J.: Lotus japonicus: Legume research in the fast lane. Trends in Plant Science 10 (5), pp. 222 - 228 (2005)
Journal Article
Urbanczyk-Wochniak, E.; Baxter, C.; Kolbe, A.; Kopka, J.; Sweetlove, L. J.; Fernie, A. R.: Profiling of diurnal patterns of metabolite and transcript abundance in potato (Solanum tuberosum) leaves. Planta 221 (6), pp. 891 - 903 (2005)
Journal Article
Urbanczyk-Wochniak, E.; Fernie, A. R.: Metabolic profiling reveals altered nitrogen nutrient regimes have diverse effects on the metabolism of hydroponically-grown tomato (Solanum lycopersicum) plants. Journal of Experimental Botany 56 (410), pp. 309 - 321 (2005)
Journal Article
Usadel, B.; Kuschinsky, A. M.; Steinhauser, D.; Pauly, M.: Transcriptional co-response analysis as a tool to identify new components of the wall biosynthetic machinery. Plant Biosystems 139 (1), pp. 69 - 73 (2005)
Journal Article
Usadel, B.; Nagel, A.; Thimm, O.; Redestig, H.; Bläsing, O. E.; Palacios-Rojas, N.; Selbig, J.; Hannemann, J.; Piques, M. C.; Steinhauser, D. et al.; Scheible, W.-R.; Gibon, Y.; Morcuende, R.; Weicht, D.; Meyer, S.; Stitt, M.: Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiology 138 (3), pp. 1195 - 1204 (2005)
Journal Article
Vissenberg, K.; Fry, S. C.; Pauly, M.; Hofte, H.; Verbelen, J. P.: XTH acts at the microfibril-matrix interface during cell elongation. Journal of Experimental Botany 56 (412), pp. 673 - 683 (2005)
Journal Article
Weckwerth, W.; Morgenthal, K.: Metabolomics: from pattern recognition to biological interpretation. Drug Discovery Today 10 (22), pp. 1551 - 1558 (2005)
Journal Article
Welthagen, W.; Shellie, R. A.; Spranger, J.; Ristow, M.; Zimmermann, R.; Fiehn, O.: Comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry (GC x GC-TOF) for high resolution metabolomics: biomarker discovery on spleen tissue extracts of obese NZO compared to lean C57BL/6 mice. Metabolomics 1 (1), pp. 65 - 73 (2005)
Journal Article
Willmund, F.; Schroda, M.: HEAT SHOCKPROTEIN 90C is a bona fide Hsp90 that interacts with plastidic HSP70B in Chlamydomonas reinhardtii. Plant Physiology 138 (4), pp. 2310 - 2322 (2005)
Journal Article
Wolschin, F.; Lehmann, U.; Glinski, M.; Weckwerth, W.: An integrated strategy for identification and relative quantification of site-specific protein phosphorylation using liquid chromatography coupled to MS(2)/MS(3). Rapid Communications in Mass Spectrometry 19 (24), pp. 3626 - 3632 (2005)
Journal Article
Wolschin, F.; Weckwerth, W.: Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites. Plant Methods 1 (1), p. 9 (2005)
Journal Article
Wolschin, F.; Wienkoop, S.; Weckwerth, W.: Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC). Proteomics 5 (17), pp. 4389 - 4397 (2005)
Journal Article
Wolski, W. E.; Lalowski, M.; Martus, P.; Herwig, R.; Giavalisco, P.; Gobom, J.; Sickmann, A.; Lehrach, H.; Reinert, K.: Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process. BMC Bioinformatics 6, p. 285 (2005)
Journal Article
Xu, J.; Brearley, C. A.; Lin, W. H.; Wang, Y.; Ye, R.; Mueller-Roeber, B.; Xu, Z. H.; Xue, H.-W.: A role of Arabidopsis inositol polyphosphate kinase, AtIPK2 alpha, in pollen germination and root growth. Plant Physiology 137 (1), pp. 94 - 103 (2005)
Journal Article
Yanai, I.; Benjamin, H.; Shmoish, M.; Chalifa-Caspi, V.; Shklar, M.; Ophir, R.; Bar-Even, A.; Horn-Saban, S.; Safran, M.; Domany, E. et al.; Lancet, D.; Shmueli, O.: Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification. Bioinformatics 21 (5), pp. 650 - 659 (2005)
Journal Article
Zywicki, B.; Catchpole, G.; Draper, J.; Fiehn, O.: Comparison of rapid liquid chromatography-electrospray ionization-tandem mass spectrometry methods for determination of glycoalkaloids in transgenic field-grown potatoes. Analytical Biochemistry 336 (2), pp. 178 - 186 (2005)

Book (1)

Hucho, F.; Brockhoff, K.; van den Daele, W.; Koechy, K.; Reich, J.; Rheinberger, H.-J.; Mueller-Roeber, B.; Sperling, K.; Wobus, A. M.; Boysen, M. et al.; Koelsch, M.: Gentechnologiebericht - Analyse einer Hochtechnologie in Deutschland. Elsevier Spektrum Akademischer Verlag, München, GER (2005), 579 pp.

Book Chapter (15)

Book Chapter
Bock, R.: Extranuclear inheritance: Gene transfer out of plastids. In: Progress in Botany, Vol. 67, pp. 75 - 98 (Eds. Esser, K.; Luettge, U. E.; Beyschlag, W.; Murata, J.). Springer-Verlag, Berlin, GER (2005)
Book Chapter
Desbrosses, G.; Steinhauser, D.; Kopka, J.; Udvardi, M. K.: Lotus metabolome analysis using GC-MS. In: Lotus japonicus handbook, pp. 165 - 174 (Eds. Marquez, A. J.; Stougaard, J.; Udvardi, M.; Parniske, M.; Spaink, H. P. et al.). Kluwer, Dordrecht (2005)
Book Chapter
Doermann, P.: Lipide und Vitamine in Chloroplasten höherer Pflanzen: Essentielle Funktionen in der Photosynthese und in der menschlichen Ernährung. In: Jahrbuch der Max-Planck Gesellschaft (Ed. Plehn, G.). Max-Planck-Gesellschaft zur Förderung der Wissenschaft e.V., München, GER (2005)
Book Chapter
Doermann, P.: Membrane lipids. In: Plant lipids: Biology, utilization and manipulation, pp. 123 - 161 (Ed. Murphy, D. J.). Blackwell Publ., Oxford, UK (2005)
Book Chapter
Dreyer, I.; Mueller-Roeber, B.; Koehler, B.: Voltage-gated ion channels. In: Membrane Transport in Plants, pp. 150 - 192 (Ed. Blatt, M. R.). Blackwell Publ., Sheffield, UK (2005)
Book Chapter
Fiehn, O.; Wohlgemuth, G.; Scholz, M.: Setup and annotation of metabolomic experiments by integrating biological and mass spectrometric metadata. In: Data Integration in the Life Sciences, pp. 224 - 239 (Eds. Ludaescher, B.; Raschid, L.). Springer-Verlag, Berlin, Heidelberg (2005)
Book Chapter
Harmer, S.; Covington, M.; Blaesing, O. E.; Stitt, M.: Circadian regulation of global gene expression and metabolism. In: Endogenous Plant Rhythms., pp. 133 - 166 (Eds. Hall, A. J. W.; McWaters, H. G.). Blackwell Publ., Oxford, UK (2005)
Book Chapter
Kloska, S.; Krueger, P.; Selbig, J.: Lotus japonicus expression database. In: Lotus japonicus handbook, pp. 149 - 154 (Ed. Marques, A. J.). Springer-Verlag, Dordrecht, NED (2005)
Book Chapter
Köhler, C.; Grossniklaus, U.: Seed Development and Genomic Imprinting in Plants. In: Progress in Molecular and Subcellular Biology, Vol. 38, pp. 237 - 262 (2005)
Book Chapter
Kraemer, U.; Clemens, S.: Functions and homeostasis of zinc, copper, and nickel in plants. In: Topics in Current Genetics, pp. 216 - 271 (Eds. Tamás, M.; Martinoia, E.) (2005)
Book Chapter
Kragler, F.: Plasmodesmata: Protein Transport Signals and Receptors. In: Plasmodesmata, 3, pp. 53 - 72. Blackwell Publ. (2005)
Book Chapter
Nikiforova, V. J.; Bielecka, M.; Gakière, B.; Krueger, S.; Rinder, J.; Kempa, S.; Hesse, H.; Hoefgen, R.: Effect of sulfur availability on Arabidopsis thaliana primary metabolism. In: Sulfur transport and assimilation in plants in the postgenomic era, pp. 139 - 153 (Eds. Saito, K.; de Kok, L.J.; Stulen, I.; Hawkesford, M.J.; Schnug, E. et al.). Backhuys Publishers, Leiden, NED (2005)
Book Chapter
Riemenschneider, A.; Riedel, K.; Hoefgen, R.; Papenbrock, J.; Hesse, H.: O-acetylserine(thiol)lyase regulates cysteine homeostasis in potato plants (Solanum tuberosum L.). In: Sulfur transport and assimilation in plants in the postgenomic era, pp. 95 - 99 (Eds. Saito, K.; de Kok, L.J.; Stulen, I.; Hawkesford, M.J.; Schnug, E. et al.). Backhuys Publishers, Leiden, NED (2005)
Book Chapter
Schmuelling, T.; Werner, T.; Kraemer, U.; Riefler, M.: The enhanced root system of cytokinin-deficient plants and ist consequences for mineral uptake. In: Plant nutrition for food security, human health and environmental protection, pp. 474 - 475 (Ed. Li, C.J. e. a.). Tsinghua University Press, Beijing, CHN (2005)
Book Chapter
Thimm, O.; Blaesing, O.; Usadel, B.; Gibon, Y.: Evaluation of the transcriptome and genome to inform the study of metabolic control in plants. In: Advances in Plant Research - Control of Primary Metabolism in Plants (Eds. Plaxton, W.; MacManus, M.). Blackwell Publ., Oxford, UK (2005)

Conference Paper (5)

Conference Paper
Draeger, D. B.; Voigt, K.; Kraemer, U.: Short transcript-derived fragments from the metal hyperaccumulator model species Arabidopsis halleri. In: Zeitschrift für Naturforschung C, pp. 172 - 178. Zeitschrift für Naturforschung C. (2005)
Conference Paper
Fluck, J.; Stitt, M.; Selbig, J.; Hofmann, M.; Thimm, O.: Using named entity recognition for ontology annotation: An experimental approach for Arabidopsis functional genome annotation. In: ECCB'05 Workshop on Biomedical Ontologies and Text Processing. ECCB'05 Workshop on Biomedical Ontologies and Text Processing, Madrid, ESP. (2005)
Conference Paper
Loehmannsroeben, H. G.; Beck, M.; Hildebrandt, N.; Schmaelzlin, E.; van Dongen, J. T.: New Challenges in biophotonics: Laser-based fluoroimmuno analysis and in-vivo optical oxygen monitoring. In: Workshop on Laser Applications in Europe, p. E1570 - E1570 (Eds. Gries, W.; Pearsall, T. P.). Workshop on Laser Applications in Europe. (2005)
Conference Paper
Nunes-Nesi, A.; Carrari, F.; Lytovchenko, A.; Fernie, A. R.: Enhancing crop yield in Solanaceous species through the genetic manipulation of energy metabolism. In: BioScience 2005 Conference, pp. 1430 - 1434. BioScience 2005 Conference, Glasgow, SCOTLAND. (2005)
Conference Paper
Shellie, R. A.; Welthagen, W.; Zrostlikova, J.; Spranger, J.; Ristow, M.; Fiehn, O.; Zimmermann, R.: Statistical methods for comparing comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry results: Metabolomic analysis of mouse tissue extracts. In: 2nd International Symposium on Comprehensive Multidimensional Gas Chromatography, pp. 83 - 90. 2nd International Symposium on Comprehensive Multidimensional Gas Chromatography, Atlanta, GA. (2005)

Meeting Abstract (3)

Meeting Abstract
Carrari, F.; Fernie, A. R.: Characterizing the metabolic regulation that underlies tomato fruit development. In Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology, 141 (3), p. S297 - S297. (2005)
Meeting Abstract
Ishizaki, K.; Larson, T. A.; Schauer, N.; Fernie, A. R.; Graham, I. A.; Leaver, C. J.: The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation. In Plant Cell, 17 (9), pp. 2587 - 2600. (2005)
Meeting Abstract
Stitt, M.: Multilevel genomics analysis of carbon-nutrient interactions in arabidopsis. In FEBS Journal, 272, p. 460 - 460. (2005)

Poster (1)

Kopka, J.; Steinhauser, D.: Cellular inventory: A joint initiative of the comprehensive systems-biology database [CSB. DB], the Golm Metabolite Database [GMD] and MapMan. (2005)

Editorial (1)

Udvardi, M. K.; Scheible, W.-R.: GRAS genes and the symbiotic Green Revolution. Science 308 (5729), pp. 1749 - 1750 (2005)
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