Publications of Alisdair Fernie

Max Planck Institute of Molecular Plant Physiology

Journal Article (1103)

951.

Journal Article

Maloney, G. S.; Kochevenko, A.; Tieman, D. M.; Tohge, T.; Krieger, U.; Zamir, D.; Taylor, M. G.; Fernie, A. R.; Klee, H. J.: Characterization of the Branched-Chain Amino Acid Aminotransferase Enzyme Family in Tomato. Plant Physiology 153 (3), pp. 925 - 936 (2010)

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952.

Journal Article

Mathieu-Rivet, E.; Gevaudant, F.; Sicard, A.; Salar, S.; Do, P. T.; Mouras, A.; Fernie, A. R.; Gibon, Y.; Rothan, C.; Chevalier, C. et al.; Hernould, M.: Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo-reduplication for fruit growth in tomato. The Plant Journal 62 (5), pp. 727 - 741 (2010)

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953.

Journal Article

Munoz-Bertomeu, J.; Cascales-Minana, B.; Irles-Segura, A.; Mateu, I.; Nunes-Nesi, A.; Fernie, A. R.; Segura, J.; Ros, R.: The Plastidial Glyceraldehyde-3-Phosphate Dehydrogenase Is Critical for Viable Pollen Development in Arabidopsis. Plant Physiology 152 (4), pp. 1830 - 1841 (2010)

MPG.PuRe

954.

Journal Article

Nashilevitz, S.; Melamed-Bessudo, C.; Izkovich, Y.; Rogachev, I.; Osorio, S.; Itkin, M.; Adato, A.; Pankratov, I.; Hirschberg, J.; Fernie, A. R. et al.; Wolf, S.; Usadel, B.; Levy, A. A.; Rumeau, D.; Aharoni, A.: An Orange Ripening Mutant Links Plastid NAD(P)H Dehydrogenase Complex Activity to Central and Specialized Metabolism during Tomato Fruit Maturation. The Plant Cell 22 (6), pp. 1977 - 1997 (2010)

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955.

Journal Article

Peluffo, L.; Lia, V.; Troglia, C.; Maringolo, C.; Norma, P.; Escande, A.; Hopp, H. E.; Lytovchenko, A.; Fernie, A. R.; Heinz, R. et al.; Carrari, F.: Metabolic profiles of sunflower genotypes with contrasting response to Sclerotinia sclerotiorum infection. Phytochemistry 71 (1), pp. 70 - 80 (2010)

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956.

Journal Article

Phuc, T. D.; Prudent, M.; Sulpice, R.; Causse, M.; Fernie, A. R.: The Influence of Fruit Load on the Tomato Pericarp Metabolome in a Solanum chmielewskii Introgression Line Population. Plant Physiology 154 (3), pp. 1128 - 1142 (2010)

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957.

Journal Article

Radchuk, R.; Conrad, U.; Saalbach, I.; Giersberg, M.; Emery, R. J. N.; Kuester, H.; Nunes-Nesi, A.; Fernie, A. R.; Weschke, W.; Weber, H.: Abscisic acid deficiency of developing pea embryos achieved by immunomodulation attenuates developmental phase transition and storage metabolism. The Plant Journal 64 (5), pp. 715 - 730 (2010)

MPG.PuRe

958.

Journal Article

Riebeseel, E.; Haeusler, R. E.; Radchuk, R.; Meitzel, T.; Hajirezaei, M.-R.; Emery, R. J. N.; Kuester, H.; Nunes-Nesi, A.; Fernie, A. R.; Weschke, W. et al.; Weber, H.: The 2-oxoglutarate/malate translocator mediates amino acid and storage protein biosynthesis in pea embryos. The Plant Journal 61 (2), pp. 350 - 363 (2010)

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959.

Journal Article

Rocha, M.; Licausi, F.; Araujo, W. L.; Nunes-Nesi, A.; Sodek, L.; Fernie, A. R.; van Dongen, J. T.: Glycolysis and the Tricarboxylic Acid Cycle Are Linked by Alanine Aminotransferase during Hypoxia Induced by Waterlogging of Lotus japonicus. Plant Physiology 152 (3), pp. 1501 - 1513 (2010)

MPG.PuRe

960.

Journal Article

Sienkiewicz-Porzucek, A.; Sulpice, R.; Osorio, S.; Krahnert, I.; Leisse, A.; Urbanczyk-Wochniak, E.; Hodges, M.; Fernie, A. R.; Nunes-Nesi, A.: Mild Reductions in Mitochondrial NAD-Dependent Isocitrate Dehydrogenase Activity Result in Altered Nitrate Assimilation and Pigmentation But Do Not Impact Growth. Molecular Plant 3 (1), pp. 156 - 173 (2010)

MPG.PuRe

961.

Journal Article

Skirycz, A.; de Bodt, S.; Obata, T.; de Clercq, I.; Claeys, H.; de Rycke, R.; Andriankaja, M.; van Aken, O.; van Breusegem, F.; Fernie, A. R. et al.; Inze, D.: Developmental Stage Specificity and the Role of Mitochondrial Metabolism in the Response of Arabidopsis Leaves to Prolonged Mild Osmotic Stress. Plant Physiology 152 (1), pp. 226 - 244 (2010)

MPG.PuRe

962.

Journal Article

Steinhauser, M.-C.; Steinhauser, D.; Koehl, K. I.; Carrari, F.; Gibon, Y.; Fernie, A. R.; Stitt, M.: Enzyme Activity Profiles during Fruit Development in Tomato Cultivars and Solanum pennellii. Plant Physiology 153 (1), pp. 80 - 98 (2010)

MPG.PuRe

963.

Journal Article

Stracke, R.; Jahns, O.; Keck, M.; Tohge, T.; Niehaus, K.; Fernie, A. R.; Weisshaar, B.: Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12-and MYB111-independent flavonol glycoside accumulation. New Phytologist 188 (4), pp. 985 - 1000 (2010)

MPG.PuRe

964.

Journal Article

Sulpice, R.; Sienkiewicz-Porzucek, A.; Osorio, S.; Krahnert, I.; Stitt, M.; Fernie, A. R.; Nunes-Nesi, A.: Mild reductions in cytosolic NADP-dependent isocitrate dehydrogenase activity result in lower amino acid contents and pigmentation without impacting growth. Amino Acids 39 (4), pp. 1055 - 1066 (2010)

MPG.PuRe

965.

Journal Article

Sulpice, R.; Trenkamp, S.; Steinfath, M.; Usadel, B.; Gibon, Y.; Witucka-Wall, H.; Pyl, E. T.; Tschoep, H.; Steinhauser, M.-C.; Guenther, M. et al.; Hoehne, M.; Rohwer, J. M.; Altmann, T.; Fernie, A. R.; Stitt, M.: Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. The Plant Cell 22 (8), pp. 2872 - 2893 (2010)

MPG.PuRe

966.

Journal Article

Taylor, L.; Nunes-Nesi, A.; Parsley, K.; Leiss, A.; Leach, G.; Coates, S.; Wingler, A.; Fernie, A. R.; Hibberd, J. M.: Cytosolic pyruvate,orthophosphate dikinase functions in nitrogen remobilization during leaf senescence and limits individual seed growth and nitrogen content. The Plant Journal 62 (4), pp. 641 - 652 (2010)

MPG.PuRe

967.

Journal Article

Tohge, T.; Fernie, A. R.: Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nature Protocols 5 (6), pp. 1210 - 1227 (2010)

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968.

Journal Article

van der Merwe, M. J.; Osorio, S.; Araujo, W. L.; Balbo, I.; Nunes-Nesi, A.; Maximova, E.; Carrari, F.; Bunik, V. I.; Persson, S.; Fernie, A. R.: Tricarboxylic Acid Cycle Activity Regulates Tomato Root Growth via Effects on Secondary Cell Wall Production. Plant Physiology 153 (2), pp. 611 - 621 (2010)

MPG.PuRe

969.

Journal Article

Vogel, J. T.; Walter, M. H.; Giavalisco, P.; Lytovchenko, A.; Kohlen, W.; Charnikhova, T.; Simkin, A. J.; Goulet, C.; Strack, D.; Bouwmeester, H. J. et al.; Fernie, A. R.; Klee, H. J.: SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhiza-induced apocarotenoid formation in tomato. The Plant Journal 61 (2), pp. 300 - 311 (2010)

MPG.PuRe

970.

Journal Article

Angelovici, R.; Fait, A.; Zhu, X. H.; Szymanski, J.; Feldmesser, E.; Fernie, A. R.; Galili, G.: Deciphering Transcriptional and Metabolic Networks Associated with Lysine Metabolism during Arabidopsis Seed Development. Plant Physiology 151 (4), pp. 2058 - 2072 (2009)

MPG.PuRe

971.

Journal Article

Brautigam, K.; Dietzel, L.; Kleine, T.; Stroher, E.; Wormuth, D.; Dietz, K. J.; Radke, D.; Wirtz, M.; Hell, R.; Doermann, P. et al.; Nunes-Nesi, A.; Schauer, N.; Fernie, A. R.; Oliver, S. N.; Geigenberger, P.; Leister, D.; Pfannschmidt, T.: Dynamic Plastid Redox Signals Integrate Gene Expression and Metabolism to Induce Distinct Metabolic States in Photosynthetic Acclimation in Arabidopsis. The Plant Cell 21 (9), pp. 2715 - 2732 (2009)

MPG.PuRe

972.

Journal Article

Fernie, A. R.; Martinoia, E.: Malate. Jack of all trades or master of a few? Phytochemistry 70 (7), pp. 828 - 832 (2009)

MPG.PuRe

973.

Journal Article

Gilbert, L.; Alhagdow, M.; Nunes-Nesi, A.; Quemener, B.; Guillon, F.; Bouchet, B.; Faurobert, M.; Gouble, B.; Page, D.; Garcia, V. et al.; Petit, J.; Stevens, R.; Causse, M.; Fernie, A. R.; Lahaye, M.; Rothan, C.; Baldet, P.: GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato. The Plant Journal 60 (3), pp. 499 - 508 (2009)

MPG.PuRe

974.

Journal Article

Janacek, S. H.; Trenkamp, S.; Palmer, B.; Brown, N. J.; Parsley, K.; Stanley, S.; Astley, H. M.; Rolfe, S. A.; Quick, W. P.; Fernie, A. R. et al.; Hibberd, J. M.: Photosynthesis in cells around veins of the C-3 plant Arabidopsis thaliana is important for both the shikimate pathway and leaf senescence as well as contributing to plant fitness. The Plant Journal 59 (2), pp. 329 - 343 (2009)

MPG.PuRe

975.

Journal Article

Lehmann, M.; Schwarzlander, M.; Obata, T.; Sirikantaramas, S.; Burow, M.; Olsen, C. E.; Tohge, T.; Fricker, M. D.; Moller, B. L.; Fernie, A. R. et al.; Sweetlove, L. J.; Laxa, M.: The Metabolic Response of Arabidopsis Roots to Oxidative Stress is Distinct from that of Heterotrophic Cells in Culture and Highlights a Complex Relationship between the Levels of Transcripts, Metabolites, and Flux. Molecular Plant 2 (3), pp. 390 - 406 (2009)

MPG.PuRe

976.

Journal Article

Liu, Y. J.; Nunes-Nesi, A.; Wallstrom, S. V.; Lager, I.; Michalecka, A. M.; Norberg, F. E. B.; Widell, S.; Fredlund, K. M.; Fernie, A. R.; Rasmusson, A. G.: A Redox-Mediated Modulation of Stem Bolting in Transgenic Nicotiana sylvestris Differentially Expressing the External Mitochondrial NADPH Dehydrogenase. Plant Physiology 150 (3), pp. 1248 - 1259 (2009)

MPG.PuRe

977.

Journal Article

Lytovchenko, A.; Beleggia, R.; Schauer, N.; Isaacson, T.; Leuendorf, J. E.; Hellmann, H.; Rose, J. K. C.; Fernie, A. R.: Application of GC-MS for the detection of lipophilic compounds in diverse plant tissues. Plant Methods 5, p. 4 (2009)

MPG.PuRe

978.

Journal Article

Marchive, C.; Yehudai-Resheff, S.; Germain, A.; Fei, Z. J.; Jiang, X. S.; Judkins, J.; Wu, H.; Fernie, A. R.; Fait, A.; Stern, D. B.: Abnormal Physiological and Molecular Mutant Phenotypes Link Chloroplast Polynucleotide Phosphorylase to the Phosphorus Deprivation Response in Arabidopsis. Plant Physiology 151 (2), pp. 905 - 924 (2009)

MPG.PuRe

979.

Journal Article

Osorio, S.; Tohge, T.; Fernie, A. R.: Application of metabolomic profiling for identififying valuable traits in tomato. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 4 (024), pp. 1 - 9 (2009)

MPG.PuRe

980.

Journal Article

Palmieri, F.; Rieder, B.; Ventrella, A.; Blanco, E.; Do, P. T.; Nunes-Nesi, A.; Trauth, A. U.; Fiermonte, G.; Tjaden, J.; Agrimi, G. et al.; Kirchberger, S.; Paradies, E.; Fernie, A. R.; Neuhaus, H. E.: Molecular Identification and Functional Characterization of Arabidopsis thaliana Mitochondrial and Chloroplastic NAD(+) Carrier Proteins. The Journal of Biological Chemistry 284 (45), pp. 31249 - 31259 (2009)

MPG.PuRe

981.

Journal Article

Strodtkotter, I.; Padmasree, K.; Dinakar, C.; Speth, B.; Niazi, P. S.; Wojtera, J.; Voss, I.; Do, P. T.; Nunes-Nesi, A.; Fernie, A. R. et al.; Linke, V.; Raghavendra, A. S.; Scheibe, R.: Induction of the AOX1D Isoform of Alternative Oxidase in A-thaliana T-DNA Insertion Lines Lacking Isoform AOX1A Is Insufficient to Optimize Photosynthesis when Treated with Antimycin A. Molecular Plant 2 (2), pp. 284 - 297 (2009)

MPG.PuRe

982.

Journal Article

Sulpice, R.; Pyl, E. T.; Ishihara, H.; Trenkamp, S.; Steinfath, M.; Witucka-Wall, H.; Gibon, Y.; Usadel, B.; Poree, F.; Piques, M. C. et al.; von Korff, M.; Steinhauser, M.-C.; Keurentjes, J. J. B.; Guenther, M.; Hoehne, M.; Selbig, J.; Fernie, A. R.; Altmann, T.; Stitt, M.: Starch as a major integrator in the regulation of plant growth. Proceedings of the National Academy of Sciences of the United States of America 106 (25), pp. 10348 - 10353 (2009)

MPG.PuRe

983.

Journal Article

Tohge, T.; Nunes-Nesi, A.; Fernie, A. R.: Finding the paths -metabolomics and approaches to metabolic flux analysis for defining metabolic pathways and their regulation. Biochemist 31, pp. 2 - 6 (2009)

MPG.PuRe

984.

Journal Article

Trenkamp, S.; Eckes, P.; Busch, M.; Fernie, A. R.: Temporally resolved GC-MS-based metabolic profiling of herbicide treated plants treated reveals that changes in polar primary metabolites alone can distinguish herbicides of differing mode of action. Metabolomics 5 (3), pp. 277 - 291 (2009)

MPG.PuRe

985.

Journal Article

van der Merwe, M. J.; Osorio, S.; Moritz, T.; Nunes-Nesi, A.; Fernie, A. R.: Decreased Mitochondrial Activities of Malate Dehydrogenase and Fumarase in Tomato Lead to Altered Root Growth and Architecture via Diverse Mechanisms. Plant Physiology 149 (2), pp. 653 - 669 (2009)

MPG.PuRe

986.

Journal Article

van Dongen, J. T.; Frohlich, A.; Ramirez-Aguilar, S. J.; Schauer, N.; Fernie, A. R.; Erban, A.; Kopka, J.; Clark, J.; Langer, A.; Geigenberger, P.: Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants. Annals of Botany 103 (2), pp. 269 - 280 (2009)

MPG.PuRe

987.

Journal Article

Wang, H.; Schauer, N.; Usadel, B.; Frasse, P.; Zouine, M.; Hernould, M.; Latche, A.; Pech, J. C.; Fernie, A. R.; Bouzayen, M.: Regulatory Features Underlying Pollination-Dependent and -Independent Tomato Fruit Set Revealed by Transcript and Primary Metabolite Profiling. The Plant Cell 21 (5), pp. 1428 - 1452 (2009)

MPG.PuRe

988.

Journal Article

Weigelt, K.; Kuester, H.; Rutten, T.; Fait, A.; Fernie, A. R.; Miersch, O.; Wasternack, C.; Emery, R. J. N.; Desel, C.; Hosein, F. et al.; Mueller, M.; Saalbach, I.; Weber, H.: ADP-Glucose Pyrophosphorylase-Deficient Pea Embryos Reveal Specific Transcriptional and Metabolic Changes of Carbon-Nitrogen Metabolism and Stress Responses. Plant Physiology 149 (1), pp. 395 - 411 (2009)

MPG.PuRe

989.

Journal Article

Wirth, J.; Poletti, S.; Aeschlimann, B.; Yakandawala, N.; Drosse, B.; Osorio, S.; Tohge, T.; Fernie, A. R.; Gunther, D.; Gruissem, W. et al.; Sautter, C.: Rice endosperm iron biofortification by targeted and synergistic action of nicotianamine synthase and ferritin. Plant Biotechnology Journal 7 (7), pp. 631 - 644 (2009)

MPG.PuRe

990.

Journal Article

Zanor, M. I.; Osorio, S.; Nunes-Nesi, A.; Carrari, F.; Lohse, M.; Usadel, B.; Kuehn, C.; Bleiss, W.; Giavalisco, P.; Willmitzer, L. et al.; Sulpice, R.; Zhou, Y. H.; Fernie, A. R.: RNA Interference of LIN5 in Tomato Confirms Its Role in Controlling Brix Content, Uncovers the Influence of Sugars on the Levels of Fruit Hormones, and Demonstrates the Importance of Sucrose Cleavage for Normal Fruit Development and Fertility. Plant Physiology 150 (3), pp. 1204 - 1218 (2009)

MPG.PuRe

991.

Journal Article

Zanor, M. I.; Rambla, J. L.; Chaib, J.; Steppa, A.; Medina, A.; Granell, A.; Fernie, A. R.; Causse, M.: Metabolic characterization of loci affecting sensory attributes in tomato allows an assessment of the influence of the levels of primary metabolites and volatile organic contents. Journal of Experimental Botany 60 (7), pp. 2139 - 2154 (2009)

MPG.PuRe

992.

Journal Article

Allen, A. E.; LaRoche, J.; Maheswari, U.; Lommer, M.; Schauer, N.; Lopez, P. J.; Finazzi, G.; Fernie, A. R.; Bowler, C.: Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proceedings of the National Academy of Sciences of the United States of America 105 (30), pp. 10438 - 10443 (2008)

MPG.PuRe

993.

Journal Article

Araujo, W. L.; Nunes-Nesi, A.; Trenkamp, S.; Bunik, V. I.; Fernie, A. R.: Inhibition of 2-Oxoglutarate Dehydrogenase in Potato Tuber Suggests the Enzyme Is Limiting for Respiration and Confirms Its Importance in Nitrogen Assimilation. Plant Physiology 148 (4), pp. 1782 - 1796 (2008)

MPG.PuRe

994.

Journal Article

Bermudez, L.; Urias, U.; Milstein, D.; Kamenetzky, L.; Asis, R.; Fernie, A. R.; van Sluys, M. A.; Carrari, F.; Rossi, M.: A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. Journal of Experimental Botany 59 (10), pp. 2875 - 2890 (2008)

MPG.PuRe

995.

Journal Article

Boettcher, C.; Centeno, D.; Freitag, J.; Hoefgen, R.; Koehl, K. I.; Kopka, J.; Kroymann, J.; Matros, A.; Mock, H.-P.; Neumann, S. et al.; Pfalz, M.; von Roepenack-Lahaye, E.; Schauer, N.; Trenkamp, S.; Zurbriggen, M.; Fernie, A. R.: Teaching (and learning from) metabolomics: The 2006 PlantMetaNet ETNA Metabolomics Research School. Physiologia Plantarum 132 (2), pp. 136 - 149 (2008)

MPG.PuRe

996.

Journal Article

Chen, S.; Hajirezaei, M.-R.; Zanor, M. I.; Hornyik, C.; Debast, S.; Lacomme, C.; Fernie, A. R.; Sonnewald, U.; Bornke, F.: RNA interference-mediated repression of sucrose-phosphatase in transgenic potato tubers (Solanum tuberosum) strongly affects the hexose-to-sucrose ratio upon cold storage with only minor effects on total soluble carbohydrate accumulation. Plant, Cell and Environment 31 (1), pp. 165 - 176 (2008)

MPG.PuRe

997.

Journal Article

DaMatta, F. M.; Cunha, R. L.; Antunes, W. C.; Martins, S. C. V.; Araujo, W. L.; Fernie, A. R.; Moraes, G. A. B. K.: In field-grown coffee trees source-sink manipulation alters photosynthetic rates, independently of carbon metabolism, via alterations in stomatal function. New Phytologist 178 (2), pp. 348 - 357 (2008)

MPG.PuRe

998.

Journal Article

Fait, A.; Hanhineva, K.; Beleggia, R.; Dai, N.; Rogachev, I.; Nikiforova, V. J.; Fernie, A. R.; Aharoni, A.: Reconfiguration of the achene and receptacle metabolic networks during strawberry fruit development. Plant Physiology 148 (2), pp. 730 - 750 (2008)

MPG.PuRe

999.

Journal Article

Farre, E. M.; Fernie, A. R.; Willmitzer, L.: Analysis of subcellular metabolite levels of potato tubers (Solanum tuberosum) displaying alterations in cellular or extracellular sucrose metabolism. Metabolomics 4 (2), pp. 161 - 170 (2008)

MPG.PuRe

1000.

Journal Article

Fettke, J.; Nunes-Nesi, A.; Alpers, J.; Szkop, M.; Fernie, A. R.; Steup, M.: Alterations in Cytosolic Glucose-Phosphate Metabolism Affect Structural Features and Biochemical Properties of Starch-Related Heteroglycans. Plant Physiology 148 (3), pp. 1614 - 1629 (2008)

MPG.PuRe