Publications of Alisdair Fernie

Max Planck Institute of Molecular Plant Physiology

Journal Article (1113)

951.

Journal Article

Araujo, W. L.; Ishizaki, K.; Nunes-Nesi, A.; Larson, T. R.; Tohge, T.; Krahnert, I.; Witt, S.; Obata, T.; Schauer, N.; Graham, I. A. et al.; Leaver, C. J.; Fernie, A. R.: Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria. The Plant Cell 22 (5), pp. 1549 - 1563 (2010)

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952.

Journal Article

Bazzini, A. A.; Asis, R.; Gonzalez, V.; Bassi, S.; Conte, M.; Soria, M.; Fernie, A. R.; Asurmendi, S.; Carrari, F.: miSolRNA: A tomato micro RNA relational database. Bmc Plant Biology 10, p. 240 (2010)

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953.

Journal Article

Brown, N. J.; Palmer, B. G.; Stanley, S.; Hajaji, H.; Janacek, S. H.; Astley, H. M.; Parsley, K.; Kajala, K.; Quick, W. P.; Trenkamp, S. et al.; Fernie, A. R.; Maurino, V. G.; Hibberd, J. M.: C4 acid decarboxylases required for C4 photosynthesis are active in the mid-vein of the C3 species Arabidopsis thaliana, and are important in sugar and amino acid metabolism. The Plant Journal 61 (1), pp. 122 - 133 (2010)

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954.

Journal Article

George, G. M.; van der Merwe, M. J.; Nunes-Nesi, A.; Bauer, R.; Fernie, A. R.; Kossmann, J.; Lloyd, J. R.: Virus-Induced Gene Silencing of Plastidial Soluble Inorganic Pyrophosphatase Impairs Essential Leaf Anabolic Pathways and Reduces Drought Stress Tolerance in Nicotiana benthamiana. Plant Physiology 154 (1), pp. 55 - 66 (2010)

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955.

Journal Article

Gur, A.; Osorio, S.; Fridman, E.; Fernie, A. R.; Zamir, D.: hi2-1, A QTL which improves harvest index, earliness and alters metabolite accumulation of processing tomatoes. Theoretical and Applied Genetics 121 (8), pp. 1587 - 1599 (2010)

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956.

Journal Article

Hannah, M. A.; Caldana, C.; Steinhauser, D.; Balbo, I.; Fernie, A. R.; Willmitzer, L.: Combined Transcript and Metabolite Profiling of Arabidopsis Grown under Widely Variant Growth Conditions Facilitates the Identification of Novel Metabolite-Mediated Regulation of Gene Expression. Plant Physiology 152 (4), pp. 2120 - 2129 (2010)

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957.

Journal Article

Huang, T. F.; Tohge, T.; Lytovchenko, A.; Fernie, A. R.; Jander, G.: Pleiotropic physiological consequences of feedback-insensitive phenylalanine biosynthesis in Arabidopsis thaliana. The Plant Journal 63 (5), pp. 823 - 835 (2010)

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958.

Journal Article

Kamenetzky, L.; Asis, R.; Bassi, S.; de Godoy, F.; Bermudez, L.; Fernie, A. R.; van Sluys, M. A.; Vrebalov, J.; Giovannoni, J. J.; Rossi, M. et al.; Carrari, F.: Genomic Analysis of Wild Tomato Introgressions Determining Metabolism- and Yield-Associated Traits. Plant Physiology 152 (4), pp. 1772 - 1786 (2010)

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959.

Journal Article

Leuendorf, J. E.; Osorio, S.; Szewczyk, A.; Fernie, A. R.; Hellmann, H.: Complex Assembly and Metabolic Profiling of Arabidopsis thaliana Plants Overexpressing Vitamin B(6) Biosynthesis Proteins. Molecular Plant 3 (5), pp. 890 - 903 (2010)

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960.

Journal Article

Lohse, M.; Nunes-Nesi, A.; Krueger, P.; Nagel, A.; Hannemann, J.; Giorgi, F. M.; Childs, L.; Osorio, S.; Walther, D.; Selbig, J. et al.; Sreenivasulu, N.; Stitt, M.; Fernie, A. R.; Usadel, B.: Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis. Plant Physiology 153 (2), pp. 642 - 651 (2010)

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961.

Journal Article

Maloney, G. S.; Kochevenko, A.; Tieman, D. M.; Tohge, T.; Krieger, U.; Zamir, D.; Taylor, M. G.; Fernie, A. R.; Klee, H. J.: Characterization of the Branched-Chain Amino Acid Aminotransferase Enzyme Family in Tomato. Plant Physiology 153 (3), pp. 925 - 936 (2010)

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962.

Journal Article

Mathieu-Rivet, E.; Gevaudant, F.; Sicard, A.; Salar, S.; Do, P. T.; Mouras, A.; Fernie, A. R.; Gibon, Y.; Rothan, C.; Chevalier, C. et al.; Hernould, M.: Functional analysis of the anaphase promoting complex activator CCS52A highlights the crucial role of endo-reduplication for fruit growth in tomato. The Plant Journal 62 (5), pp. 727 - 741 (2010)

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963.

Journal Article

Munoz-Bertomeu, J.; Cascales-Minana, B.; Irles-Segura, A.; Mateu, I.; Nunes-Nesi, A.; Fernie, A. R.; Segura, J.; Ros, R.: The Plastidial Glyceraldehyde-3-Phosphate Dehydrogenase Is Critical for Viable Pollen Development in Arabidopsis. Plant Physiology 152 (4), pp. 1830 - 1841 (2010)

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964.

Journal Article

Nashilevitz, S.; Melamed-Bessudo, C.; Izkovich, Y.; Rogachev, I.; Osorio, S.; Itkin, M.; Adato, A.; Pankratov, I.; Hirschberg, J.; Fernie, A. R. et al.; Wolf, S.; Usadel, B.; Levy, A. A.; Rumeau, D.; Aharoni, A.: An Orange Ripening Mutant Links Plastid NAD(P)H Dehydrogenase Complex Activity to Central and Specialized Metabolism during Tomato Fruit Maturation. The Plant Cell 22 (6), pp. 1977 - 1997 (2010)

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965.

Journal Article

Peluffo, L.; Lia, V.; Troglia, C.; Maringolo, C.; Norma, P.; Escande, A.; Hopp, H. E.; Lytovchenko, A.; Fernie, A. R.; Heinz, R. et al.; Carrari, F.: Metabolic profiles of sunflower genotypes with contrasting response to Sclerotinia sclerotiorum infection. Phytochemistry 71 (1), pp. 70 - 80 (2010)

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966.

Journal Article

Phuc, T. D.; Prudent, M.; Sulpice, R.; Causse, M.; Fernie, A. R.: The Influence of Fruit Load on the Tomato Pericarp Metabolome in a Solanum chmielewskii Introgression Line Population. Plant Physiology 154 (3), pp. 1128 - 1142 (2010)

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967.

Journal Article

Radchuk, R.; Conrad, U.; Saalbach, I.; Giersberg, M.; Emery, R. J. N.; Kuester, H.; Nunes-Nesi, A.; Fernie, A. R.; Weschke, W.; Weber, H.: Abscisic acid deficiency of developing pea embryos achieved by immunomodulation attenuates developmental phase transition and storage metabolism. The Plant Journal 64 (5), pp. 715 - 730 (2010)

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968.

Journal Article

Riebeseel, E.; Haeusler, R. E.; Radchuk, R.; Meitzel, T.; Hajirezaei, M.-R.; Emery, R. J. N.; Kuester, H.; Nunes-Nesi, A.; Fernie, A. R.; Weschke, W. et al.; Weber, H.: The 2-oxoglutarate/malate translocator mediates amino acid and storage protein biosynthesis in pea embryos. The Plant Journal 61 (2), pp. 350 - 363 (2010)

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969.

Journal Article

Rocha, M.; Licausi, F.; Araujo, W. L.; Nunes-Nesi, A.; Sodek, L.; Fernie, A. R.; van Dongen, J. T.: Glycolysis and the Tricarboxylic Acid Cycle Are Linked by Alanine Aminotransferase during Hypoxia Induced by Waterlogging of Lotus japonicus. Plant Physiology 152 (3), pp. 1501 - 1513 (2010)

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970.

Journal Article

Sienkiewicz-Porzucek, A.; Sulpice, R.; Osorio, S.; Krahnert, I.; Leisse, A.; Urbanczyk-Wochniak, E.; Hodges, M.; Fernie, A. R.; Nunes-Nesi, A.: Mild Reductions in Mitochondrial NAD-Dependent Isocitrate Dehydrogenase Activity Result in Altered Nitrate Assimilation and Pigmentation But Do Not Impact Growth. Molecular Plant 3 (1), pp. 156 - 173 (2010)

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971.

Journal Article

Skirycz, A.; de Bodt, S.; Obata, T.; de Clercq, I.; Claeys, H.; de Rycke, R.; Andriankaja, M.; van Aken, O.; van Breusegem, F.; Fernie, A. R. et al.; Inze, D.: Developmental Stage Specificity and the Role of Mitochondrial Metabolism in the Response of Arabidopsis Leaves to Prolonged Mild Osmotic Stress. Plant Physiology 152 (1), pp. 226 - 244 (2010)

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972.

Journal Article

Steinhauser, M.-C.; Steinhauser, D.; Koehl, K. I.; Carrari, F.; Gibon, Y.; Fernie, A. R.; Stitt, M.: Enzyme Activity Profiles during Fruit Development in Tomato Cultivars and Solanum pennellii. Plant Physiology 153 (1), pp. 80 - 98 (2010)

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973.

Journal Article

Stracke, R.; Jahns, O.; Keck, M.; Tohge, T.; Niehaus, K.; Fernie, A. R.; Weisshaar, B.: Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12-and MYB111-independent flavonol glycoside accumulation. New Phytologist 188 (4), pp. 985 - 1000 (2010)

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974.

Journal Article

Sulpice, R.; Sienkiewicz-Porzucek, A.; Osorio, S.; Krahnert, I.; Stitt, M.; Fernie, A. R.; Nunes-Nesi, A.: Mild reductions in cytosolic NADP-dependent isocitrate dehydrogenase activity result in lower amino acid contents and pigmentation without impacting growth. Amino Acids 39 (4), pp. 1055 - 1066 (2010)

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975.

Journal Article

Sulpice, R.; Trenkamp, S.; Steinfath, M.; Usadel, B.; Gibon, Y.; Witucka-Wall, H.; Pyl, E. T.; Tschoep, H.; Steinhauser, M.-C.; Guenther, M. et al.; Hoehne, M.; Rohwer, J. M.; Altmann, T.; Fernie, A. R.; Stitt, M.: Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. The Plant Cell 22 (8), pp. 2872 - 2893 (2010)

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976.

Journal Article

Taylor, L.; Nunes-Nesi, A.; Parsley, K.; Leiss, A.; Leach, G.; Coates, S.; Wingler, A.; Fernie, A. R.; Hibberd, J. M.: Cytosolic pyruvate,orthophosphate dikinase functions in nitrogen remobilization during leaf senescence and limits individual seed growth and nitrogen content. The Plant Journal 62 (4), pp. 641 - 652 (2010)

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977.

Journal Article

Tohge, T.; Fernie, A. R.: Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nature Protocols 5 (6), pp. 1210 - 1227 (2010)

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978.

Journal Article

van der Merwe, M. J.; Osorio, S.; Araujo, W. L.; Balbo, I.; Nunes-Nesi, A.; Maximova, E.; Carrari, F.; Bunik, V. I.; Persson, S.; Fernie, A. R.: Tricarboxylic Acid Cycle Activity Regulates Tomato Root Growth via Effects on Secondary Cell Wall Production. Plant Physiology 153 (2), pp. 611 - 621 (2010)

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979.

Journal Article

Vogel, J. T.; Walter, M. H.; Giavalisco, P.; Lytovchenko, A.; Kohlen, W.; Charnikhova, T.; Simkin, A. J.; Goulet, C.; Strack, D.; Bouwmeester, H. J. et al.; Fernie, A. R.; Klee, H. J.: SlCCD7 controls strigolactone biosynthesis, shoot branching and mycorrhiza-induced apocarotenoid formation in tomato. The Plant Journal 61 (2), pp. 300 - 311 (2010)

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980.

Journal Article

Angelovici, R.; Fait, A.; Zhu, X. H.; Szymanski, J.; Feldmesser, E.; Fernie, A. R.; Galili, G.: Deciphering Transcriptional and Metabolic Networks Associated with Lysine Metabolism during Arabidopsis Seed Development. Plant Physiology 151 (4), pp. 2058 - 2072 (2009)

MPG.PuRe

981.

Journal Article

Brautigam, K.; Dietzel, L.; Kleine, T.; Stroher, E.; Wormuth, D.; Dietz, K. J.; Radke, D.; Wirtz, M.; Hell, R.; Doermann, P. et al.; Nunes-Nesi, A.; Schauer, N.; Fernie, A. R.; Oliver, S. N.; Geigenberger, P.; Leister, D.; Pfannschmidt, T.: Dynamic Plastid Redox Signals Integrate Gene Expression and Metabolism to Induce Distinct Metabolic States in Photosynthetic Acclimation in Arabidopsis. The Plant Cell 21 (9), pp. 2715 - 2732 (2009)

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982.

Journal Article

Fernie, A. R.; Martinoia, E.: Malate. Jack of all trades or master of a few? Phytochemistry 70 (7), pp. 828 - 832 (2009)

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983.

Journal Article

Gilbert, L.; Alhagdow, M.; Nunes-Nesi, A.; Quemener, B.; Guillon, F.; Bouchet, B.; Faurobert, M.; Gouble, B.; Page, D.; Garcia, V. et al.; Petit, J.; Stevens, R.; Causse, M.; Fernie, A. R.; Lahaye, M.; Rothan, C.; Baldet, P.: GDP-d-mannose 3,5-epimerase (GME) plays a key role at the intersection of ascorbate and non-cellulosic cell-wall biosynthesis in tomato. The Plant Journal 60 (3), pp. 499 - 508 (2009)

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984.

Journal Article

Janacek, S. H.; Trenkamp, S.; Palmer, B.; Brown, N. J.; Parsley, K.; Stanley, S.; Astley, H. M.; Rolfe, S. A.; Quick, W. P.; Fernie, A. R. et al.; Hibberd, J. M.: Photosynthesis in cells around veins of the C-3 plant Arabidopsis thaliana is important for both the shikimate pathway and leaf senescence as well as contributing to plant fitness. The Plant Journal 59 (2), pp. 329 - 343 (2009)

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985.

Journal Article

Lehmann, M.; Schwarzlander, M.; Obata, T.; Sirikantaramas, S.; Burow, M.; Olsen, C. E.; Tohge, T.; Fricker, M. D.; Moller, B. L.; Fernie, A. R. et al.; Sweetlove, L. J.; Laxa, M.: The Metabolic Response of Arabidopsis Roots to Oxidative Stress is Distinct from that of Heterotrophic Cells in Culture and Highlights a Complex Relationship between the Levels of Transcripts, Metabolites, and Flux. Molecular Plant 2 (3), pp. 390 - 406 (2009)

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986.

Journal Article

Liu, Y. J.; Nunes-Nesi, A.; Wallstrom, S. V.; Lager, I.; Michalecka, A. M.; Norberg, F. E. B.; Widell, S.; Fredlund, K. M.; Fernie, A. R.; Rasmusson, A. G.: A Redox-Mediated Modulation of Stem Bolting in Transgenic Nicotiana sylvestris Differentially Expressing the External Mitochondrial NADPH Dehydrogenase. Plant Physiology 150 (3), pp. 1248 - 1259 (2009)

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987.

Journal Article

Lytovchenko, A.; Beleggia, R.; Schauer, N.; Isaacson, T.; Leuendorf, J. E.; Hellmann, H.; Rose, J. K. C.; Fernie, A. R.: Application of GC-MS for the detection of lipophilic compounds in diverse plant tissues. Plant Methods 5, p. 4 (2009)

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988.

Journal Article

Marchive, C.; Yehudai-Resheff, S.; Germain, A.; Fei, Z. J.; Jiang, X. S.; Judkins, J.; Wu, H.; Fernie, A. R.; Fait, A.; Stern, D. B.: Abnormal Physiological and Molecular Mutant Phenotypes Link Chloroplast Polynucleotide Phosphorylase to the Phosphorus Deprivation Response in Arabidopsis. Plant Physiology 151 (2), pp. 905 - 924 (2009)

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989.

Journal Article

Osorio, S.; Tohge, T.; Fernie, A. R.: Application of metabolomic profiling for identififying valuable traits in tomato. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 4 (024), pp. 1 - 9 (2009)

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990.

Journal Article

Palmieri, F.; Rieder, B.; Ventrella, A.; Blanco, E.; Do, P. T.; Nunes-Nesi, A.; Trauth, A. U.; Fiermonte, G.; Tjaden, J.; Agrimi, G. et al.; Kirchberger, S.; Paradies, E.; Fernie, A. R.; Neuhaus, H. E.: Molecular Identification and Functional Characterization of Arabidopsis thaliana Mitochondrial and Chloroplastic NAD(+) Carrier Proteins. The Journal of Biological Chemistry 284 (45), pp. 31249 - 31259 (2009)

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991.

Journal Article

Strodtkotter, I.; Padmasree, K.; Dinakar, C.; Speth, B.; Niazi, P. S.; Wojtera, J.; Voss, I.; Do, P. T.; Nunes-Nesi, A.; Fernie, A. R. et al.; Linke, V.; Raghavendra, A. S.; Scheibe, R.: Induction of the AOX1D Isoform of Alternative Oxidase in A-thaliana T-DNA Insertion Lines Lacking Isoform AOX1A Is Insufficient to Optimize Photosynthesis when Treated with Antimycin A. Molecular Plant 2 (2), pp. 284 - 297 (2009)

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992.

Journal Article

Sulpice, R.; Pyl, E. T.; Ishihara, H.; Trenkamp, S.; Steinfath, M.; Witucka-Wall, H.; Gibon, Y.; Usadel, B.; Poree, F.; Piques, M. C. et al.; von Korff, M.; Steinhauser, M.-C.; Keurentjes, J. J. B.; Guenther, M.; Hoehne, M.; Selbig, J.; Fernie, A. R.; Altmann, T.; Stitt, M.: Starch as a major integrator in the regulation of plant growth. Proceedings of the National Academy of Sciences of the United States of America 106 (25), pp. 10348 - 10353 (2009)

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993.

Journal Article

Tohge, T.; Nunes-Nesi, A.; Fernie, A. R.: Finding the paths -metabolomics and approaches to metabolic flux analysis for defining metabolic pathways and their regulation. Biochemist 31, pp. 2 - 6 (2009)

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994.

Journal Article

Trenkamp, S.; Eckes, P.; Busch, M.; Fernie, A. R.: Temporally resolved GC-MS-based metabolic profiling of herbicide treated plants treated reveals that changes in polar primary metabolites alone can distinguish herbicides of differing mode of action. Metabolomics 5 (3), pp. 277 - 291 (2009)

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995.

Journal Article

van der Merwe, M. J.; Osorio, S.; Moritz, T.; Nunes-Nesi, A.; Fernie, A. R.: Decreased Mitochondrial Activities of Malate Dehydrogenase and Fumarase in Tomato Lead to Altered Root Growth and Architecture via Diverse Mechanisms. Plant Physiology 149 (2), pp. 653 - 669 (2009)

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996.

Journal Article

van Dongen, J. T.; Frohlich, A.; Ramirez-Aguilar, S. J.; Schauer, N.; Fernie, A. R.; Erban, A.; Kopka, J.; Clark, J.; Langer, A.; Geigenberger, P.: Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants. Annals of Botany 103 (2), pp. 269 - 280 (2009)

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997.

Journal Article

Wang, H.; Schauer, N.; Usadel, B.; Frasse, P.; Zouine, M.; Hernould, M.; Latche, A.; Pech, J. C.; Fernie, A. R.; Bouzayen, M.: Regulatory Features Underlying Pollination-Dependent and -Independent Tomato Fruit Set Revealed by Transcript and Primary Metabolite Profiling. The Plant Cell 21 (5), pp. 1428 - 1452 (2009)

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998.

Journal Article

Weigelt, K.; Kuester, H.; Rutten, T.; Fait, A.; Fernie, A. R.; Miersch, O.; Wasternack, C.; Emery, R. J. N.; Desel, C.; Hosein, F. et al.; Mueller, M.; Saalbach, I.; Weber, H.: ADP-Glucose Pyrophosphorylase-Deficient Pea Embryos Reveal Specific Transcriptional and Metabolic Changes of Carbon-Nitrogen Metabolism and Stress Responses. Plant Physiology 149 (1), pp. 395 - 411 (2009)

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999.

Journal Article

Wirth, J.; Poletti, S.; Aeschlimann, B.; Yakandawala, N.; Drosse, B.; Osorio, S.; Tohge, T.; Fernie, A. R.; Gunther, D.; Gruissem, W. et al.; Sautter, C.: Rice endosperm iron biofortification by targeted and synergistic action of nicotianamine synthase and ferritin. Plant Biotechnology Journal 7 (7), pp. 631 - 644 (2009)

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1000.

Journal Article

Zanor, M. I.; Osorio, S.; Nunes-Nesi, A.; Carrari, F.; Lohse, M.; Usadel, B.; Kuehn, C.; Bleiss, W.; Giavalisco, P.; Willmitzer, L. et al.; Sulpice, R.; Zhou, Y. H.; Fernie, A. R.: RNA Interference of LIN5 in Tomato Confirms Its Role in Controlling Brix Content, Uncovers the Influence of Sugars on the Levels of Fruit Hormones, and Demonstrates the Importance of Sucrose Cleavage for Normal Fruit Development and Fertility. Plant Physiology 150 (3), pp. 1204 - 1218 (2009)

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