Publications of Alisdair Fernie

1001.

Journal Article

Mazzella, M. A.; Zanor, M. I.; Fernie, A. R.; Casal, J. J.: Metabolic responses to red/far-red ratio and ontogeny show poor correlation with the growth rate of sunflower stems. Journal of Experimental Botany 59 (9), pp. 2469 - 2477 (2008)

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1002.

Journal Article

Morgan, M. J.; Lehmann, M.; Schwarzlander, M.; Baxter, C. J.; Sienkiewicz-Porzucek, A.; Williams, T. C. R.; Schauer, N.; Fernie, A. R.; Fricker, M. D.; Ratcliffe, R. G. et al.; Sweetlove, L. J.; Finkemeier, I.: Decrease in manganese superoxide dismutase leads to reduced root growth and affects tricarboxylic acid cycle flux and mitochondrial redox homeostasis. Plant Physiology 147 (1), pp. 101 - 114 (2008)

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1003.

Journal Article

Nunes-Nesi, A.; Sulpice, R.; Gibon, Y.; Fernie, A. R.: The enigmatic contribution of mitochondrial function in photosynthesis. Journal of Experimental Botany 59 (7), pp. 1675 - 1684 (2008)

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1004.

Journal Article

Oliver, S. N.; Lunn, J. E.; Urbanczyk-Wochniak, E.; Lytovchenko, A.; van Dongen, J. T.; Faix, B.; Schmalzlin, E.; Fernie, A. R.; Geigenberger, P.: Decreased Expression of Cytosolic Pyruvate Kinase in Potato Tubers Leads to a Decline in Pyruvate Resulting in an in Vivo Repression of the Alternative Oxidase. Plant Physiology 148 (3), pp. 1640 - 1654 (2008)

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1005.

Journal Article

Oliver, S. N.; Tiessen, A.; Fernie, A. R.; Geigenberger, P.: Decreased expression of plastidial adenylate kinase in potato tubers results in an enhanced rate of respiration and a stimulation of starch synthesis that is attributable to post-translational redox-activation of ADP-glucose pyrophosphorylase. Journal of Experimental Botany 59 (2), pp. 315 - 325 (2008)

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1006.

Journal Article

Palmieri, L.; Santoro, A.; Carrari, F.; Blanco, E.; Nunes-Nesi, A.; Arrigoni, R.; Genchi, F.; Fernie, A. R.; Palmieri, F.: Identification and Characterization of ADNT1, a Novel Mitochondrial Adenine Nucleotide Transporter from Arabidopsis. Plant Physiology 148 (4), pp. 1797 - 1808 (2008)

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1007.

Journal Article

Riewe, D.; Grosman, L.; Fernie, A. R.; Wucke, C.; Geigenberger, P.: The potato-specific apyrase is apoplastically localized and has influence on gene expression, growth, and development. Plant Physiology 147 (3), pp. 1092 - 1109 (2008)

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1008.

Journal Article

Riewe, D.; Grosman, L.; Fernie, A. R.; Zauber, H.; Wucke, C.; Geigenberger, P.: A Cell Wall-Bound Adenosine Nucleosidase is Involved in the Salvage of Extracellular ATP in Solanum tuberosum. Plant and Cell Physiology 49 (10), pp. 1572 - 1579 (2008)

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1009.

Journal Article

Riewe, D.; Grosman, L.; Zauber, H.; Wucke, C.; Fernie, A. R.; Geigenberger, P.: Metabolic and developmental adaptations of growing potato tubers in response to specific manipulations of the adenylate energy status. Plant Physiology 146 (4), pp. 1579 - 1598 (2008)

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1010.

Journal Article

Ruffel, S.; Freixes, S.; Balzergue, S.; Tillard, P.; Jeudy, C.; Martin-Magniette, M. L.; van der Merwe, M. J.; Kakar, K.; Gouzy, J.; Fernie, A. R. et al.; Udvardi, M. K.; Salon, C.; Gojon, A.; Lepetit, M.: Systemic signaling of the plant nitrogen status triggers specific transcriptome responses depending on the nitrogen source in Medicago truncatula. Plant Physiology 146 (4), pp. 2020 - 2035 (2008)

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1011.

Journal Article

Schauer, N.; Semel, Y.; Balbo, I.; Steinfath, M.; Repsilber, D.; Selbig, J.; Pleban, T.; Zamir, D.; Fernie, A. R.: Mode of inheritance of primary metabolic traits in tomato. The Plant Cell 20 (3), pp. 509 - 523 (2008)

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1012.

Journal Article

Sienkiewicz-Porzucek, A.; Nunes-Nesi, A.; Sulpice, R.; Lisec, J.; Centeno, D. C.; Carillo, P.; Leisse, A.; Urbanczyk-Wochniak, E.; Fernie, A. R.: Mild reductions in mitochondrial citrate synthase activity result in a compromised nitrate assimilation and reduced leaf pigmentation but have no effect on photosynthetic performance or growth. Plant Physiology 147 (1), pp. 115 - 127 (2008)

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1013.

Journal Article

Timm, S.; Nunes-Nesi, A.; Pamik, T.; Morgenthal, K.; Wienkoop, S.; Keerberg, O.; Weckwerth, W.; Kleczkowski, L. A.; Fernie, A. R.; Bauwe, H.: A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis. The Plant Cell 20 (10), pp. 2848 - 2859 (2008)

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1014.

Journal Article

Weigelt, K.; Kuester, H.; Radchuk, R.; Mueller, M.; Weichert, H.; Fait, A.; Fernie, A. R.; Saalbach, I.; Weber, H.: Increasing amino acid supply in pea embryos reveals specific interactions of N and C metabolism, and highlights the importance of mitochondrial metabolism. The Plant Journal 55 (6), pp. 909 - 926 (2008)

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1015.

Journal Article

Alhagdow, M.; Mounet, F.; Gilbert, L.; Nunes-Nesi, A.; Garcia, V.; Just, D.; Petit, J.; Beauvoit, B.; Fernie, A. R.; Rothan, C. et al.; Baldet, P.: Silencing of the mitochondrial ascorbate synthesizing enzyme L-galactono-1,4-lactone dehydrogenase affects plant and fruit development in tomato(1[w][OA]). Plant Physiology 145 (4), pp. 1408 - 1422 (2007)

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1016.

Journal Article

Baxter, C. J.; Liu, J. L.; Fernie, A. R.; Sweetlove, L. J.: Determination of metabolic fluxes in a non-steady-state system. Phytochemistry 68 (16-18), pp. 2313 - 2319 (2007)

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1017.

Journal Article

Baxter, C. J.; Redestig, H.; Schauer, N.; Repsilber, D.; Patil, K. R.; Nielsen, J.; Selbig, J.; Liu, J. L.; Fernie, A. R.; Sweetlove, L. J.: The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiology 143 (1), pp. 312 - 325 (2007)

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1018.

Journal Article

Ding, L.; Hofius, D.; Hajirezaei, M.-R.; Fernie, A. R.; Bornke, F.; Sonnewald, U.: Functional analysis of the essential bifunctional tobacco enzyme 3-dehydroquinate dehydratase/shikimate dehydrogenase in transgenic tobacco plants. Journal of Experimental Botany 58 (8), pp. 2053 - 2067 (2007)

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1019.

Journal Article

Fahnenstich, H.; Saigo, M.; Niessen, M.; Zanor, M. I.; Andreo, C. S.; Fernie, A. R.; Drincovich, M. F.; Flugge, U. I.; Maurino, V. G.: Alteration of organic acid metabolism in Arabidopsis overexpressing the maize C(4)NADP-malic enzyme causes accelerated senescence during extended darkness. Plant Physiology 145 (3), pp. 640 - 652 (2007)

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1020.

Journal Article

Footitt, S.; Dietrich, D.; Fait, A.; Fernie, A. R.; Holdsworth, M. J.; Baker, A.; Theodoulou, F. L.: The COMATOSE ATP-binding cassette transporter is required for full fertility in arabidopsis. Plant Physiology 144 (3), pp. 1467 - 1480 (2007)

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1021.

Journal Article

Frankel, N.; Nunes-Nesi, A.; Balbo, I.; Mazuch, J.; Centeno, D.; Iusem, N. D.; Fernie, A. R.; Carrari, F.: ci21A/Asr1 expression influences glucose accumulation in potato tubers. Plant Molecular Biology 63 (5), pp. 719 - 730 (2007)

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1022.

Journal Article

Graham, J. W.; Williams, T. C.; Morgan, M.; Fernie, A. R.; Ratcliffe, R. G.; Sweetlove, L. J.: Glycolytic enzymes associate dynamically with mitochondria in response to respiratory demand and support substrate channeling. Plant Cell 19 (11), pp. 3723 - 3738 (2007)

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1023.

Journal Article

Lemaitre, T.; Urbanczyk-Wochniak, E.; Flesch, V.; Bismuth, E.; Fernie, A. R.; Hodges, M.: NAD-dependent isocitrate dehydrogenase mutants of arabidopsis suggest the enzyme is not limiting for nitrogen assimilation. Plant Physiology 144 (3), pp. 1546 - 1558 (2007)

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1024.

Journal Article

Messerli, G.; Nia, V. P.; Trevisan, M.; Kolbe, A.; Schauer, N.; Geigenberger, P.; Chen, J. C.; Davison, A. C.; Fernie, A. R.; Zeeman, S. C.: Rapid classification of phenotypic mutants of arabidopsis via metabolite fingerprinting. Plant Physiology 143 (4), pp. 1484 - 1492 (2007)

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1025.

Journal Article

Nunes-Nesi, A.; Carrari, F.; Gibon, Y.; Sulpice, R.; Lytovchenko, A.; Fisahn, J.; Graham, J.; Ratcliffe, R. G.; Sweetlove, L. J.; Fernie, A. R.: Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function. Plant Journal 50 (6), pp. 1093 - 1106 (2007)

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1026.

Journal Article

Raschke, M.; Buerkle, L.; Mueller, N.; Nunes-Nesi, A.; Fernie, A. R.; Arigoni, D.; Amrhein, N.; Fitzpatrick, T. B.: Vitamin B1 biosynthesis in plants requires the essential iron sulfur cluster protein, THIC. Proceedings of the National Academy of Sciences of the United States of America 104 (49), pp. 19637 - 19642 (2007)

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1027.

Journal Article

Saladie, M.; Matas, A. J.; Isaacson, T.; Jenks, M. A.; Goodwin, S. M.; Niklas, K. J.; Xiaolin, R.; Labavitch, J. M.; Shackel, K. A.; Fernie, A. R. et al.; Lytovchenko, A.; O'Neill, M. A.; Watkins, C. B.; Rose, J. K. C.: A reevaluation of the key factors that influence tomato fruit softening and integrity. Plant Physiology 144 (2), pp. 1012 - 1028 (2007)

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1028.

Journal Article

Semel, Y.; Schauer, N.; Roessner, U.; Zamir, D.; Fernie, A. R.: Metabolite analysis for the comparison of irrigated and non-irrigated field grown tomato of varying genotype. Metabolomics 3 (3), pp. 289 - 295 (2007)

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1029.

Journal Article

Steuer, R.; Nesi, A. N.; Fernie, A. R.; Gross, T.; Blasius, B.; Selbig, J.: From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics 23 (11), pp. 1378 - 1385 (2007)

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1030.

Journal Article

Studart-Guimaraes, C.; Fait, A.; Nunes-Nesi, A.; Carrari, F.; Usadel, B.; Fernie, A. R.: Reduced Expression of Succinyl CoA Ligase can be Compensated for by an Upregulation of the {gamma}-amino-butyrate (GABA) Shunt in Illuminated Tomato Leaves. Plant Physiology 145 (3), pp. 626 - 639 (2007)

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1031.

Journal Article

Szymanski, J.; Bielecka, M.; Carrari, F.; Fernie, A. R.; Hoefgen, R.; Nikiforova, V. J.: On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality. Phytochemistry 68 (16-18), pp. 2163 - 2175 (2007)

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1032.

Journal Article

Fait, A.; Angelovici, R.; Less, H.; Ohad, I.; Urbanczyk-Wochniak, E.; Fernie, A. R.; Galili, G.: Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiology 142 (3), pp. 839 - 854 (2006)

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1033.

Journal Article

Farre, E. M.; Tech, S.; Trethewey, R. N.; Fernie, A. R.; Willmitzer, L.: Subcellular pyrophosphate metabolism in developing tubers of potato (Solanum tuberosum). Plant Molecular Biology 62 (1-2), pp. 165 - 179 (2006)

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1034.

Journal Article

Hackel, A.; Schauer, N.; Carrari, F.; Fernie, A. R.; Grimm, B.; Kuhn, C.: Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways. Plant Journal 45 (2), pp. 180 - 192 (2006)

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1035.

Journal Article

Hajirezaei, M.-R.; Biemelt, S.; Peisker, M.; Lytovchenko, A.; Fernie, A. R.; Sonnewald, U.: The influence of cytosolic phosphorylating glyceraldehyde 3-phosphate dehydrogenase (GAPC) on potato tuber metabolism. Journal of Experimental Botany 57 (10), pp. 2363 - 2377 (2006)

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1036.

Journal Article

Ishizaki, K.; Schauer, N.; Larson, T. R.; Graham, I. A.; Fernie, A. R.; Leaver, C. J.: The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness. Plant Journal 47 (5), pp. 751 - 760 (2006)

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1037.

Journal Article

Joshi, V.; Laubengayer, K. M.; Schauer, N.; Fernie, A. R.; Jander, G.: Two Arabidopsis threonine aldolases are nonredundant and compete with threonine deaminase for a common substrate pool. Plant Cell 18 (12), pp. 3564 - 3575 (2006)

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1038.

Journal Article

Junker, B. H.; Wuttke, R.; Nunes-Nesi, A.; Steinhauser, D.; Schauer, N.; Buessis, D.; Willmitzer, L.; Fernie, A. R.: Enhancing vacuolar sucrose cleavage within the developing potato tuber has only minor effects on metabolism. Plant and Cell Physiology 47 (2), pp. 277 - 289 (2006)

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1039.

Journal Article

Kolbe, A.; Oliver, S. N.; Fernie, A. R.; Stitt, M.; van Dongen, J. T.; Geigenberger, P.: Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism. Plant Physiology 141 (2), pp. 412 - 422 (2006)

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1040.

Journal Article

Lisec, J.; Schauer, N.; Kopka, J.; Willmitzer, L.; Fernie, A. R.: Gas chromatography mass spectrometry-based metabolite profiling in plants. Nature Protocols 1 (1), pp. 387 - 396 (2006)

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1041.

Journal Article

Palmieri, L.; Arrigoni, R.; Blanco, E.; Carrari, F.; Zanor, M. I.; Studart-Guimaraes, C.; Fernie, A. R.; Palmieri, F.: Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization. Plant Physiology 142 (3), pp. 855 - 865 (2006)

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1042.

Journal Article

Schauer, N.; Semel, Y.; Roessner, U.; Gur, A.; Balbo, I.; Carrari, F.; Pleban, T.; Perez-Melis, A.; Bruedigam, C.; Kopka, J. et al.; Willmitzer, L.; Zamir, D.; Fernie, A. R.: Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nature Biotechnology 24 (4), pp. 447 - 454 (2006)

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1043.

Journal Article

Steinfath, M.; Repsilber, D.; Hische, M.; Schauer, N.; Fernie, A. R.; Selbig, J.: Metabolite profiles as a reflection of physiological status - a methodological validation. Journal of Integrative Bioinformatics 3, pp. 2 - 18 (2006)

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1044.

Journal Article

Sweetlove, L. J.; Lytovchenko, A.; Morgan, M.; Nunes-Nesi, A.; Taylor, N. L.; Baxter, C. J.; Eickmeier, I.; Fernie, A. R.: Mitochondrial uncoupling protein is required for efficient photosynthesis. Proceedings of the National Academy of Sciences of the United States of America 103 (51), pp. 19587 - 19592 (2006)

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1045.

Journal Article

Tieman, D.; Taylor, M.; Schauer, N.; Fernie, A. R.; Hanson, A. D.; Klee, H. J.: Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde. Proceedings of the National Academy of Sciences of the United States of America 103 (21), pp. 8287 - 8292 (2006)

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1046.

Journal Article

Urbanczyk-Wochniak, E.; Usadel, B.; Thimm, O.; Nunes-Nesi, A.; Carrari, F.; Davy, M.; Blaesing, O.; Kowalczyk, M.; Weicht, D.; Polinceusz, A. et al.; Meyer, S.; Stitt, M.; Fernie, A. R.: Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: Effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Molecular Biology 60 (5), pp. 773 - 792 (2006)

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1047.

Journal Article

Wagner, S.; Bernhardt, A.; Leuendorf, J. E.; Drewke, C.; Lytovchenko, A.; Mujahed, N.; Gurgui, C.; Frommer, W. B.; Leistner, E.; Fernie, A. R. et al.; Hellmann, H.: Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis. Plant Cell 18 (7), pp. 1722 - 1735 (2006)

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1048.

Journal Article

Baxter, C. J.; Carrari, F.; Bauke, A.; Overy, S.; Hill, S. A.; Quick, W. P.; Fernie, A. R.; Sweetlove, L. J.: Fruit carbohydrate metabolism in an introgression line of tomato with increased fruit soluble solids. Plant and Cell Physiology 46 (3), pp. 425 - 437 (2005)

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1049.

Journal Article

Carrari, F.; Coll-Garcia, D.; Schauer, N.; Lytovchenko, A.; Palacios-Rojas, N.; Balbo, I.; Rosso, M.; Fernie, A. R.: Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth. Plant Physiology 137 (1), pp. 70 - 82 (2005)

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1050.

Journal Article

Davies, H. V.; Shepherd, L. V. T.; Burrell, M. M.; Carrari, F.; Urbanczyk-Wochniak, E.; Leisse, A.; Hancock, R. D.; Taylor, M.; Viola, R.; Ross, H. et al.; McRae, D.; Willmitzer, L.; Fernie, A. R.: Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology 46 (7), pp. 1103 - 1115 (2005)

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Journal Article (1103)