Max Planck Institute of Molecular Plant Physiology

Publications of Alisdair Fernie

Journal Article (45)

1.

Journal Article

Allen, A. E.; Dupont, C. L.; Obornik, M.; Horak, A.; Nunes-Nesi, A.; McCrow, J. P.; Zheng, H.; Johnson, D. A.; Hu, H. H.; Fernie, A. R. et al.; Bowler, C.: Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature 473 (7346), pp. 203 - 209 (2011)

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2.

Journal Article

Almeida, J.; Quadrana, L.; Asis, R.; Setta, N.; de Godoy, F.; Bermudez, L.; Otaiza, S. N.; da Silva, J. V. C.; Fernie, A. R.; Carrari, F. et al.; Rossi, M.: Genetic dissection of vitamin E biosynthesis in tomato. Journal of Experimental Botany 62 (11), pp. 3781 - 3798 (2011)

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3.

Journal Article

Angelovici, R.; Fait, A.; Fernie, A. R.; Galili, G.: A seed high-lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination. New Phytologist 189 (1), pp. 148 - 159 (2011)

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4.

Journal Article

Araujo, W. L.; Ishizaki, K.; Nunes-Nesi, A.; Tohge, T.; Larson, T. R.; Krahnert, I.; Balbo, I.; Witt, S.; Doermann, P.; Graham, I. A. et al.; Leaver, C. J.; Fernie, A. R.: Analysis of a Range of Catabolic Mutants Provides Evidence That Phytanoyl-Coenzyme A Does Not Act as a Substrate of the Electron-Transfer Flavoprotein/Electron-Transfer Flavoprotein:Ubiquinone Oxidoreductase Complex in Arabidopsis during Dark-Induced Senescence. Plant Physiology 157 (1), pp. 55 - 69 (2011)

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5.

Journal Article

Araujo, W. L.; Nunes-Nesi, A.; Fernie, A. R.: Fumarate: Multiple functions of a simple metabolite. Phytochemistry 72 (9), pp. 838 - 843 (2011)

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6.

Journal Article

Araujo, W. L.; Nunes-Nesi, A.; Osorio, S.; Usadel, B.; Fuentes, D.; Nagy, R.; Balbo, I.; Lehmann, M.; Studart-Witkowski, C.; Tohge, T. et al.; Martinoia, E.; Jordana, X.; DaMatta, F. M.; Fernie, A. R.: Antisense Inhibition of the Iron-Sulphur Subunit of Succinate Dehydrogenase Enhances Photosynthesis and Growth in Tomato via an Organic Acid-Mediated Effect on Stomatal Aperture. The Plant Cell 23 (2), pp. 600 - 627 (2011)

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7.

Journal Article

Bazzini, A. A.; Manacorda, C. A.; Tohge, T.; Conti, G.; Rodriguez, M. C.; Nunes-Nesi, A.; Villanueva, S.; Fernie, A. R.; Carrari, F.; Asurmendi, S.: Metabolic and miRNA Profiling of TMV Infected Plants Reveals Biphasic Temporal Changes. PLoS One 6 (12), p. e28466 (2011)

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8.

Journal Article

Caldana, C.; Degenkolbe, T.; Cuadros-Inostroza, A.; Klie, S.; Sulpice, R.; Leisse, A.; Steinhauser, D.; Fernie, A. R.; Willmitzer, L.; Hannah, M. A.: High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions. The Plant Journal 67 (5), pp. 869 - 884 (2011)

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9.

Journal Article

Centeno, D. C.; Osorio, S.; Nunes-Nesi, A.; Bertolo, A. L. F.; Carneiro, R. T.; Araujo, W. L.; Steinhauser, M.-C.; Michalska, J.; Rohrmann, J.; Geigenberger, P. et al.; Oliver, S. N.; Stitt, M.; Carrari, F.; Rose, J. K. C.; Fernie, A. R.: Malate Plays a Crucial Role in Starch Metabolism, Ripening, and Soluble Solid Content of Tomato Fruit and Affects Postharvest Softening. The Plant Cell 23 (1), pp. 162 - 184 (2011)

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10.

Journal Article

Csukasi, F.; Osorio, S.; Gutierrez, J. R.; Kitamura, J.; Giavalisco, P.; Nakajima, M.; Fernie, A. R.; Rathjen, J. P.; Botella, M. A.; Valpuesta, V. et al.; Medina-Escobar, N.: Gibberellin biosynthesis and signalling during development of the strawberry receptacle. New Phytologist 191 (2), pp. 376 - 390 (2011)

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11.

Journal Article

Dal Cin, V.; Tieman, D. M.; Tohge, T.; McQuinn, R.; de Vos, R. C. H.; Osorio, S.; Schmelz, E. A.; Taylor, M. G.; Smits-Kroon, M. T.; Schuurink, R. C. et al.; Haring, M. A.; Giovannoni, J.; Fernie, A. R.; Klee, H. J.: Identification of Genes in the Phenylalanine Metabolic Pathway by Ectopic Expression of a MYB Transcription Factor in Tomato Fruit. The Plant Cell 23 (7), pp. 2738 - 2753 (2011)

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12.

Journal Article

Debast, S.; Nunes-Nesi, A.; Hajirezaei, M.-R.; Hofmann, J.; Sonnewald, U.; Fernie, A. R.; Bornke, F.: Altering Trehalose-6-Phosphate Content in Transgenic Potato Tubers Affects Tuber Growth and Alters Responsiveness to Hormones during Sprouting. Plant Physiology 156 (4), pp. 1754 - 1771 (2011)

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13.

Journal Article

Degu, A.; Hatew, B.; Nunes-Nesi, A.; Shlizerman, L.; Zur, N.; Katz, E.; Fernie, A. R.; Blumwald, E.; Sadka, A.: Inhibition of aconitase in citrus fruit callus results in a metabolic shift towards amino acid biosynthesis. Planta 234 (3), pp. 501 - 513 (2011)

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14.

Journal Article

Djamei, A.; Schipper, K.; Rabe, F.; Ghosh, A.; Vincon, V.; Kahnt, J.; Osorio, S.; Tohge, T.; Fernie, A. R.; Feussner, I. et al.; Feussner, K.; Meinicke, P.; Stierhof, Y. D.; Schwarz, H.; Macek, B.; Mann, M.; Kahmann, R.: Metabolic priming by a secreted fungal effector. Nature 478 (7369), pp. 395 - 398 (2011)

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15.

Journal Article

Fait, A.; Nunes Nesi, A.; Angelovici, R.; Lehmann, M.; Pham, P. A.; Song, L.; Haslam, R. P.; Napier, J. A.; Galili, G.; Fernie, A. R.: Targeted Enhancement of Glutamate-to-gamma-Aminobutyrate Conversion in Arabidopsis Seeds Affects Carbon-Nitrogen Balance and Storage Reserves in a Development-Dependent Manner. Plant Physiology 157 (3), pp. 1026 - 1042 (2011)

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16.

Journal Article

Fettke, J.; Nunes-Nesi, A.; Fernie, A. R.; Steup, M.: Identification of a novel heteroglycan-interacting protein, HIP 1.3, from Arabidopsis thaliana. Journal of Plant Physiology 168 (12), pp. 1415 - 1425 (2011)

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17.

Journal Article

Fuentes, D.; Meneses, M.; Nunes-Nesi, A.; Araujo, W.; Tapia, R.; Gomez, I.; Holuigue, L.; Gutierrez, R. A.; Fernie, A. R.; Jordana, X.: A Deficiency in the Flavoprotein of Arabidopsis Mitochondrial Complex II Results in Elevated Photosynthesis and Better Growth in Nitrogen-Limiting Conditions. Plant Physiology 157 (3), pp. 1114 - 1127 (2011)

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18.

Journal Article

Gur, A.; Semel, Y.; Osorio, S.; Friedmann, M.; Seekh, S.; Ghareeb, B.; Mohammad, A.; Pleban, T.; Gera, G.; Fernie, A. R. et al.; Zamir, D.: Yield quantitative trait loci from wild tomato are predominately expressed by the shoot. Theoretical and Applied Genetics 122 (2), pp. 405 - 420 (2011)

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19.

Journal Article

Howard, T. P.; Fryer, M. J.; Singh, P.; Metodiev, M.; Lytovchenko, A.; Obata, T.; Fernie, A. R.; Kruger, N. J.; Quick, W. P.; Lloyd, J. C. et al.; Raines, C. A.: Antisense Suppression of the Small Chloroplast Protein CP12 in Tobacco Alters Carbon Partitioning and Severely Restricts Growth. Plant Physiology 157 (2), pp. 620 - 631 (2011)

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20.

Journal Article

Karlova, R.; Rosin, F. M.; Busscher-Lange, J.; Parapunova, V.; Do, P. T.; Fernie, A. R.; Fraser, P. D.; Baxter, C.; Angenent, G. C.; de Maagd, R. A.: Transcriptome and Metabolite Profiling Show That APETALA2a Is a Major Regulator of Tomato Fruit Ripening. The Plant Cell 23 (3), pp. 923 - 941 (2011)

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21.

Journal Article

Kochevenko, A.; Fernie, A. R.: The genetic architecture of branched-chain amino acid accumulation in tomato fruits. Journal of Experimental Botany 62 (11), pp. 3895 - 3906 (2011)

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22.

Journal Article

Krueger, S.; Giavalisco, P.; Krall, L.; Steinhauser, M.-C.; Buessis, D.; Usadel, B.; Fluegge, U.-I.; Fernie, A. R.; Willmitzer, L.; Steinhauser, D.: A Topological Map of the Compartmentalized Arabidopsis thaliana Leaf Metabolome. PLoS One 6 (3), p. e17806 (2011)

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23.

Journal Article

Kusano, M.; Tohge, T.; Fukushima, A.; Kobayashi, M.; Hayashi, N.; Otsuki, H.; Kondou, Y.; Goto, H.; Kawashima, M.; Matsuda, F. et al.; Niida, R.; Matsui, M.; Saito, K.; Fernie, A. R.: Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light. The Plant Journal 67 (2), pp. 354 - 369 (2011)

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24.

Journal Article

Lombardo, V. A.; Osorio, S.; Borsani, J.; Lauxmann, M. A.; Bustamante, C. A.; Budde, C. O.; Andreo, C. S.; Lara, M. V.; Fernie, A. R.; Drincovich, M. F.: Metabolic profiling during peach fruit development and ripening reveals the metabolic networks that underpin each developmental stage. Plant Physiology 157 (4), pp. 1696 - 1710 (2011)

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25.

Journal Article

Lytovchenko, A.; Eickmeier, I.; Pons, C.; Osorio, S.; Szecowka, M.; Lehmberg, K.; Arrivault, S.; Tohge, T.; Pineda, B.; Anton, M. T. et al.; Hedtke, B.; Lu, Y.; Fisahn, J.; Bock, R.; Stitt, M.; Grimm, B.; Granell, A.; Fernie, A. R.: Tomato fruit photosynthesis is seemingly unimportant in primary metabolism and ripening but plays a considerable role in seed development. Plant Physiology 157 (4), pp. 1650 - 1663 (2011)

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26.

Journal Article

Matas, A. J.; Yeats, T. H.; Buda, G. J.; Zheng, Y.; Chatterjee, S.; Tohge, T.; Ponnala, L.; Adato, A.; Aharoni, A.; Stark, R. et al.; Fernie, A. R.; Fei, Z.; Giovannoni, J. J.; Rose, J. K. C.: Tissue- and Cell-Type Specific Transcriptome Profiling of Expanding Tomato Fruit Provides Insights into Metabolic and Regulatory Specialization and Cuticle Formation. The Plant Cell 23 (11), pp. 3893 - 3910 (2011)

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27.

Journal Article

Meitzel, T.; Radchuk, R.; Nunes-Nesi, A.; Fernie, A. R.; Link, W.; Weschke, W.; Weber, H.: Hybrid embryos of Vicia faba develop enhanced sink strength, which is established during early development. Plant Journal 65 (4), pp. 517 - 531 (2011)

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28.

Journal Article

Michaeli, S.; Fait, A.; Lagor, K.; Nunes-Nesi, A.; Grillich, N.; Yellin, A.; Bar, D.; Khan, M.; Fernie, A. R.; Turano, F. J. et al.; Fromm, H.: A mitochondrial GABA permease connects the GABA shunt and the TCA cycle, and is essential for normal carbon metabolism. The Plant Journal 67 (3), pp. 485 - 498 (2011)

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29.

Journal Article

Mutwil, M.; Klie, S.; Tohge, T.; Giorgi, F. M.; Wilkins, O.; Campbell, M. M.; Fernie, A. R.; Usadel, B.; Nikoloski, Z.; Persson, S.: PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 23 (3), pp. 895 - 910 (2011)

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30.

Journal Article

Nafati, M.; Cheniclet, C.; Hernould, M.; Do, P. T.; Fernie, A. R.; Chevalier, C.; Gevaudant, F.: The specific overexpression of a cyclin-dependent kinase inhibitor in tomato fruit mesocarp cells uncouples endoreduplication and cell growth. The Plant Journal 65 (4), pp. 543 - 556 (2011)

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31.

Journal Article

Nunes-Nesi, A.; Araujo, W. L.; Fernie, A. R.: Targeting Mitochondrial Metabolism and Machinery as a Means to Enhance Photosynthesis. Plant Physiology 155 (1), pp. 101 - 107 (2011)

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32.

Journal Article

Obata, T.; Matthes, A.; Koszior, S.; Lehmann, M.; Araujo, W. L.; Bock, R.; Sweetlove, L. J.; Fernie, A. R.: Alteration of mitochondrial protein complexes in relation to metabolic regulation under short-term oxidative stress in Arabidopsis seedlings. Phytochemistry 72 (10), pp. 1081 - 1091 (2011)

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33.

Journal Article

Osorio, S.; Alba, R.; Damasceno, C. M. B.; Lopez-Casado, G.; Lohse, M.; Zanor, M. I.; Tohge, T.; Usadel, B.; Rose, J. K. C.; Fei, Z. J. et al.; Giovannoni, J. J.; Fernie, A. R.: Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants Reveals Novel Regulatory Interactions. Plant Physiology 157 (1), pp. 405 - 425 (2011)

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34.

Journal Article

Osorio, S.; Bombarely, A.; Giavalisco, P.; Usadel, B.; Stephens, C.; Araguez, I.; Medina-Escobar, N.; Botella, M. A.; Fernie, A. R.; Valpuesta, V.: Demethylation of oligogalacturonides by FaPE1 in the fruits of the wild strawberry Fragaria vesca triggers metabolic and transcriptional changes associated with defence and development of the fruit. Journal of Experimental Botany 62 (8), pp. 2855 - 2873 (2011)

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35.

Journal Article

Quadrana, L.; Rodriguez, M. C.; Lopez, M.; Bermudez, L.; Nunes-Nesi, A.; Fernie, A. R.; Descalzo, A.; Asis, R.; Rossi, M.; Asurmendi, S. et al.; Carrari, F.: Coupling Virus-Induced Gene Silencing to Exogenous Green Fluorescence Protein Expression Provides a Highly Efficient System for Functional Genomics in Arabidopsis and across All Stages of Tomato Fruit Development. Plant Physiology 156 (3), pp. 1278 - 1291 (2011)

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36.

Journal Article

Rashke, M.; Boycheva, S.; Crèvecoeur, M.; Nunes-Nesi, A.; Witt, S.; Fernie, A. R.; Amrhein, N.; Fitzpatrick, T. B.: Enhanced levels of vitamin B6 increase aerial organ size and positively affect stress tolerance in Arabidopsis. The Plant Journal 66 (3), pp. 414 - 432 (2011)

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37.

Journal Article

Reiland, S.; Grossmann, J.; Baerenfaller, K.; Gehrig, P.; Nunes-Nesi, A.; Fernie, A. R.; Gruissem, W.; Baginsky, S.: Integrated proteome and metabolite analysis of the de-etiolation process in plastids from rice (Oryza sativa L.). Proteomics 11 (9), pp. 1751 - 1763 (2011)

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38.

Journal Article

Rohrmann, J.; Tohge, T.; Alba, R.; Osorio, S.; Caldana, C.; McQuinn, R.; Arvidsson, S.; van der Merwe, M. J.; Riano-Pachon, D. M.; Mueller-Roeber, B. et al.; Fei, Z.; Nunes-Nesi, A.; Giovannoni, J. J.; Fernie, A. R.: Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development. The Plant Journal 68 (6), pp. 999 - 1013 (2011)

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39.

Journal Article

Skirycz, A.; Memmi, S.; de Bodt, S.; Maleux, K.; Obata, T.; Fernie, A. R.; Devreese, B.; Inze, D.: A Reciprocal (15)N-Labeling Proteomic Analysis of Expanding Arabidopsis Leaves Subjected to Osmotic Stress Indicates Importance of Mitochondria in Preserving Plastid Functions. Journal of Proteome Research 10 (3), pp. 1018 - 1029 (2011)

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40.

Journal Article

Steinbrenner, A. D.; Gomez, S.; Osorio, S.; Fernie, A. R.; Orians, C. M.: Herbivore-Induced Changes in Tomato (Solanum lycopersicum) Primary Metabolism: A Whole Plant Perspective. Journal of Chemical Ecology 37 (12), pp. 1294 - 1303 (2011)

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41.

Journal Article

Steinhauser, M.-C.; Steinhauser, D.; Gibon, Y.; Bolger, M.; Arrivault, S.; Usadel, B.; Zamir, D.; Fernie, A. R.; Stitt, M.: Identification of Enzyme Activity Quantitative Trait Loci in a Solanum lycopersicum X Solanum pennellii Introgression Line Population. Plant Physiology 157 (3), pp. 998 - 1014 (2011)

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42.

Journal Article

Timm, S.; Florian, A.; Jahnke, K.; Nunes-Nesi, A.; Fernie, A. R.; Bauwe, H.: The Hydroxypyruvate-Reducing System in Arabidopsis: Multiple Enzymes for the Same End. Plant Physiology 155 (2), pp. 694 - 705 (2011)

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43.

Journal Article

Tohge, T.; Mettler, T.; Arrivault, S.; Carroll, A. J.; Stitt, M.; Fernie, A. R.: From models to crop species: caveats and solutions for translational metabolomics. Frontiers in Plant Science 2, p. 61 (2011)

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44.

Journal Article

Tohge, T.; Ramos, M. S.; Nunes-Nesi, A.; Mutwil, M.; Giavalisco, P.; Steinhauser, D.; Schellenberg, M.; Willmitzer, L.; Persson, S.; Martinoia, E. et al.; Fernie, A. R.: Toward the storage metabolome: profiling the barley vacuole. Plant Physiology 157 (3), pp. 1469 - 1482 (2011)

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45.

Journal Article

Zabalza, A.; Orcaray, L.; Igal, M.; Schauer, N.; Fernie, A. R.; Geigenberger, P.; van Dongen, J. T.; Royuela, M.: Unraveling the role of fermentation in the mode of action of acetolactate synthase inhibitors by metabolic profiling. Journal of Plant Physiology 168 (13), pp. 1568 - 1575 (2011)

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Book Chapter (1)

46.

Book Chapter

Fernie, A. R.; Keurentjes, J. J. B.: Genetics, genomics and metabolomics. In: The biology of plant metabolomics, 8, 2011/05/03 Ed., pp. 219 - 260 (Ed. Hall, R. D.). Blackwell-Wiley, London, UK (2011)

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Conference Paper (1)

47.

Conference Paper

Araujo, W. L.; Trofimova, L.; Yu, K.; Steinhauser, D.; Krall, L.; Fernie, A. R.; Bunik, V. I.: On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in the amino acid metabolism. Amino Acids 41, p. S39 - S39 (2011)

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Other (1)

48.

Other

Fernie, A. R.; Aharoni, A.; Willmitzer, L.; Stitt, M.; Tohge, T.; Kopka, J.; Carroll, A. J.; Saito, K.; Fraser, P. D.; DeLuca, V.: Recommendations for Reporting Metabolite Data, The Plant Cell 23, pp. 2477 - 2482 (2011)

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Editorial (1)

49.

Editorial

Fernie, A. R.: Editorial overview - the Computational approaches in aid of advancing understanding in Plant Physiology. Frontiers in Plant Science 2, p. 78 (2011)

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Review Article (8)

50.

Review Article

Araujo, W. L.; Fernie, A. R.; Nunes-Nesi, A.: Control of stomatal aperture: A renaissance of the old guard. Plant Signaling & Behavior 6 (9), pp. 1305 - 1311 (2011)

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