Max Planck Institute of Molecular Plant Physiology

Publications of Alisdair Fernie

Journal Article (1103)

1.

Journal Article

Fernie, A. R.: Spotlight on “Proximity proteomics reveals a mechanism of fatty acid transfer at lipid droplet-mitochondria- endoplasmic reticulum contact sites” by Bezawork-Geleta et al. 2025. Journal of Mitochondria, Plastids and Endosymbiosis 3 (1), 2493930 (2025)

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2.

Journal Article

Karakas, E.; Bulut, M.; Fernie, A. R.: Metabolome guided treasure hunt - lerning from metabolic diversity. Journal of Plant Physiology 309, 154494 (2025)

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3.

Journal Article

da Luz, L.M.; Valente, L.M.L.; Medeiros, D.B.; Batista-Silva, W.; da Costa, L.C.; Oliveira, F.S.; Martins, S.C.V.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W.L.: Functional lack of SLAC1 modifies guard cell metabolism without impacting photosynthesis under elevated [CO2] and moderated water restriction. Environmental and Experimental Botany 233, 106142 (2025)

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4.

Journal Article

Fernie, A. R.; Martinez-Rivas, F.: Br(e)aking the tomato fruit size-sweetness trade-off. Trends in Plant Science 30 (4), pp. 350 - 351 (2025)

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5.

Journal Article

Fernie, A. R.; Zhu, F.: Chemical disarmament in plant defense: Erucamide blocks bacterial type III injectisome assembly. Developmental Cell 60 (8), pp. 1140 - 1141 (2025)

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6.

Journal Article

Li, Y.; Yang, Z.; Li, K.; Yang, C.; Lei, L.; Li, J.; Zhou, J.; Hou, H.; Liu, H.; Xiong, X. et al.; Zhan, C.; Shen, S.; Liu, X.; Maher, M.; Ahmad, H.; Fernie, A. R.; Luo, J.: Two major rice loci determine rice-staple food populations differences in vitamin B1 deficiency levels. Science Bulletin 70 (7), pp. 1046 - 1050 (2025)

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7.

Journal Article

Martins, A. O.; Silva, W. A.; Vallarino, J. G.; Omena-Garcia, R. P.; Osorio, S.; Fernie, A. R.; Nunes-Nesi, A.; Ribeiro, D. M.; Araújo, W. L.: Reductions of endogenous gibberellin content impact fruit development and modify tomato fruit metabolism during ripening. Plant Growth Regulation 105, pp. 497 - 514 (2025)

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8.

Journal Article

Müller, C.; dos Anjos, L.; Freire, F.B.S.; Fernie, A. R.; Daloso, D.M.; Eller, C.B.; Merchant, A.: Metabolic network plasticity underpins Eucalyptus water use efficiency under drought. Environmental and Experimental Botany 232, 106127 (2025)

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9.

Journal Article

Raza, A.; Anas, M.; Bhardwaj, S.; Mir, R.A.; Charagh, S.; Elahi, M.; Zhang, X.; Mir, R.R.; Weckwerth, W.; Fernie, A. R. et al.; Siddique, K.H.M.; Hu, Z.; Varshney, R.K.: Harnessing metabolomics for enhanced crop drought tolerance. The Crop Journal 13 (2), pp. 311 - 327 (2025)

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10.

Journal Article

Sweetlove, L.; Ratcliffe, R.; Fernie, A. R.: Non-canonical plant metabolism. Nature Plants 11, pp. 696 - 708 (2025)

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11.

Journal Article

Tiozon, R. J. N.; Zhang, C.; Kim, S.-R.; Liu, Q.; Fernie, A. R.; Sreenivasulu, N.: Unlocking the potential of wild rice to bring the missing nutrition to elite grains. Plant Communications, 101344 (2025)

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12.

Journal Article

Wu, S.; Zhang, Y.; Luzarowska, U.; Yang, L.; Salem, M.A.; Thirumalaikumar , V. P.; Sade, N.; Galperin, V. E.; Fernie, A. R.; Sampathkumar, A. et al.; Bershtein, S.; Fusari, C. M.; Brotman, Y.: The homeostasis of β-alanine is key for Arabidopsis reproductive growth and development. The Plant Journal 122 (1), e70134 (2025)

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13.

Journal Article

Decros, G.; Fernie, A. R.: Spotlight on “Inhibition of mitochondrial energy production leads to reorganisation of the plant endomembrane system” by Wang et al. 2025. Journal of Mitochondria, Plastids and Endosymbiosis 3 (1), 2483404 (2025)

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14.

Journal Article

Decros, G.; Zhang, Y.; Fernie, A. R.: Mitochondrial support of high rates of photosynthesis. Plant Communications 6 (3), 101285 (2025)

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15.

Journal Article

Fernie, A. R.; Bulut, M.: Design of future climate smart crops by engineering heat stress-responsive gene expression. Molecular Plant (2025)

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16.

Journal Article

Omena-Garcia, R.P.; Vallarino, J.G.; da Fonseca-Pereira, P.; Martins, A.O.; Brandão, P.M.; Ribeiro, D.M.; Osorio, S.; Fernie, A. R.; Araújo, W.L.; Nunes-Nesi, A.: Reciprocal grafting reveals the role of gibberellins in tomato root-shoot communication. Journal of Plant Physiology 306, 154444 (2025)

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17.

Journal Article

Qiu, Y.; Liu, L.; Yan, J.; Xiang, X.; Wang, S.; Luo, Y.; Deng, K.; Xu, J.; Jin, M.; Wu, X. et al.; Liwei Cheng; Zhou, Y.; Xie, W.; Liu, H.-J.; Fernie, A. R.; Hu, X.; Yan, J.: Precise engineering of gene expression by editing plasticity. Genome Biology 26, 51 (2025)

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18.

Journal Article

Timm, S.; Florian, A.; Alseekh, S.; Jahnke, K.; Hagemann, M.; Fernie, A. R.; Bauwe, H.: Improved photorespiration has a major impact on the root metabolome of Arabidopsis. Physiologia Plantarum 177 (2), e70142 (2025)

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19.

Journal Article

Wang, Z.; He, Y.; Zhao, M.; Liu, X.-Q.; Lin, H.; Shi, Y.; Zhang, K.; Lei, G.; Lai, D.; Liu, T. et al.; Peng, X.; He, J.; Li, W.; Wang, X.; Woo, S.-H.; Quinet, M.; Fernie, A. R.; Huang, X.-Y.; Zhou, M.: Genome-Wide Association Studies Reveal the Genetic Architecture of Ionomic Variation in Grains of Tartary Buckwheat. Advanced Science, 2412291 (2025)

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20.

Journal Article

Zhang, W.; Tariq, A.; Jia, X.; Yan, J.; Fernie, A. R.; Usadel, B.; Wen, W.: Plant sperm cell sequencing for genome phasing and determination of meiotic crossover points. Nature Protocols 20, pp. 690 - 708 (2025)

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21.

Journal Article

Figueiredo, Y.G.; Gasparini, K.; Bulut, M.; Fernie, A. R.; Zsögön, A.: The genetic basis of prickle loss in the Solanaceae. Trends in Plant Science 30 (2) (2025)

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22.

Journal Article

Novello, M.; Bustamante, C.; Svetaz, L.; Goldy, C.; Valentini, G.; Drincovich, M.; Brotman, Y.; Fernie, A. R.; Lara, M.: Integrated Metabolomic, Lipidomic and Proteomic Analysis Define the Metabolic Changes Occurring in Curled Areas in Leaves With Leaf Peach Curl Disease. Plant, Cell and Environment 48 (2), pp. 1179 - 1200 (2025)

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23.

Journal Article

Priego-Cubero, S.; Knoch, E.; Wang, Z.; Alseekh, S.; Braun, K.-H.; Chapman, P.; Fernie, A. R.; Liu, C.; Becker, C.: Subfunctionalization and epigenetic regulation of a biosynthetic gene cluster in Solanaceae. Proceedings of the National Academy of Sciences of the United States of America 122 (8), e2420164122 (2025)

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24.

Journal Article

Siqueira, J.; Martins, A.; Wakin, T.; Silva, M.; Batista-Silva, W.; Brito, F.; Zsögön, A.; Fernie, A. R.; Nunes-Nesi, A.; Araújo, W.: The Modulation of Growth and Metabolism in Solanum lycopersicum Contrast With the Leaf-Specific Regulation of Wild Tomato Species. Plant, Cell and Environment 48 (2), pp. 1201 - 1214 (2025)

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25.

Journal Article

Urrea-Castellanos, R.; Calderan-Rodrigues, M.J.; Artins, A.; Musialak-Lange, M.; Macharanda-Ganesh, A.; Fernie, A. R.; Wahl, V.; Caldana, C.: The Regulatory-associated protein of target of rapamycin 1B (RAPTOR 1B) interconnects with the photoperiod pathway to promote flowering in Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America 122 (6), e2405536122 (2025)

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26.

Journal Article

Vicente, R.; Fernie, A. R.; Uberegui, E.: High-throughput screening of wheat leaf dark respiration identifies significant genetic control. Journal of Experimental Botany 76 (4), pp. 904 - 908 (2025)

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27.

Journal Article

Yin, H.; Liu, W.; Hu, X.; Jia, J.; Liu, M.; Wei, J.; Cheng, Y.; Gong, X.; Li, Q.; Yan, W. et al.; Jia, J.; Gao, L.; Fernie, A. R.; Chen, W.: A wheat phytohormone atlas spanning major tissues across the entire life cycle provides novel insights into cytokinin and jasmonic acid interplay. Molecular Plant 18 (2), pp. 366 - 382 (2025)

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28.

Journal Article

Yoshida, T.; Fernie, A. R.: The protein phosphatases of abscisic acid coreceptors mediate carbon metabolism in Arabidopsis. Theoretical and Experimental Plant Physiology 37, 15 (2025)

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29.

Journal Article

Zhang, J.; Alseekh, S.; Fernie, A. R.; Qian, D.; Huang, L.: Chemical Characterization of Lipids Provides New Insights into Goji Berry Metabolism. ACS Food Science & Technology 5 (2), pp. 761 - 769 (2025)

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30.

Journal Article

Alseekh, S.; Klemmer, A.; Yan, J.; Guo, T.; Fernie, A. R.: Embracing plant plasticity or robustness as a means of ensuring food security. Nature Communications 16 (1), 461 (2025)

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31.

Journal Article

Barros, J.A.S.; Nunes-Nesi, A.; Fernie, A. R.; Araújo, W.L.: Transcriptional crosstalk linking color, acidity, and aroma in peach. Trends in Plant Science (2025)

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32.

Journal Article

Casatejada-Anchel, R.; Torres-Moncho, A.; Anoman, A. D.; Budhagatapalli, N.; Pérez-Lorences, E.; Alcántara-Enguídanos, A.; Rosa-Téllez, S.; de Souza, L. P.; Kumlehn, J.; Fernie, A. R. et al.; Muñoz-Bertomeu, J.; Ros, R.: Metabolic engineering of the serine/glycine network as a means to improve the nitrogen content of crops. Plant Biotechnology Journal 23 (1), pp. 268 - 280 (2025)

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33.

Journal Article

Kappel, S.; Frieboes, M. J.; Yokoyama, R.; Kappel, C.; Tóth, S. Z.; Fernie, A. R.; Jahns, P.; Smirnoff, N.; Aarabi, F.; Armbruster, U.: Developmental and environmental effects on VTC2-dependent leaf ascorbate accumulation and functions. Journal of Experimental Botany, eraf035 (2025)

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34.

Journal Article

Liu, M.-Y.; Jiao, Z.; Lou, H.; Tang, D.; Tian, X.; Zhou, B.-W.; Ruan, J.; Fernie, A. R.; Zhang, Q.: A glutamine synthetase-DOF transcription factor module regulates N remobilization from source to sink tissues in tea plants. Plant Physiology 197 (1), kiae644 (2025)

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35.

Journal Article

López, C.; Alseekh, S.; Rivas, F.; Fernie, A. R.; Prieto, P.; Alamillo, J.: CRISPR/Cas9 editing of two adenine phosphoribosyl transferase coding genes reveals the functional specialization of adenine salvage proteins in common bean. Journal of Experimental Botany 76 (2), pp. 346 - 362 (2025)

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36.

Journal Article

López-Tubau, J.; Laibach, N.; Burciaga-Monge, A.; Alseekh, S.; Deng, C.; Fernie, A. R.; Altabella, T.; Ferrer, A.: Differential impact of impaired steryl ester biosynthesis on the metabolome of tomato fruits and seeds. Physiologia Plantarum 177 (1), e70022 (2025)

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37.

Journal Article

Nascimento, C.P.; da Fonseca-Pereira, P.; Ferreira-Silva, M.; Rosado-Souza, L.; Linka, N.; Fernie, A. R.; Araújo, W.L.; Nunes-Nesi, A.: Functional analysis of the extraplastidial TRX system in germination and early stages of development of Arabidopsis thaliana. Plant Science 350, 112310 (2025)

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38.

Journal Article

Tiozon, R. J. N.; Pasion-Uy, E.; Alseekh, S.; Sartagoda, K. J. D.; Gempesaw, S.; Tolentino, J. H. G.; Fernie, A. R.; Sreenivasulu, N.: Lipidomics-based association study reveals genomic signatures of anti-cancer qualities of pigmented rice sprouts. Frontiers in Plant Science 16, 1533442 (2025)

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39.

Journal Article

Wu, S.; Zhang, S.; Liu, C.-M.; Fernie, A. R.; Yan, S.: Recent Advances in Mass Spectrometry-based Protein Interactome Studies. Molecular & Cellular Proteomics 24 (1), 100887 (2025)

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40.

Journal Article

Yu, Y.; Li, W.; Liu, Y.; Liu, Y.; Zhang, Q.; Ouyang, Y.; Ding, W.; Xue, Y.; Zou, Y.; Yan, J. et al.; Jia, A.; Yan, J.; Hao, X.; Gou, Y.; Zhai, Z.; Liu, L.; Zheng, Y.; Zhang, B.; Xu, J.; Yang, N.; Xiao, Y.; Zhuo, L.; Lai, Z.; Yin, P.; Liu, H.-J.; Fernie, A. R.; Jackson, D.; Yan, J.: A Zea genus-specific micropeptide controls kernel dehydration in maize. Cell 188, pp. 44 - 59 (2025)

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41.

Journal Article

D'Auria, J.C.; Fernie, A. R.: The BAHD and the bold: the mitochondria's role in alkaloid artistry. Trends in Plant Science 29 (12), pp. 1290 - 1291 (2024)

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42.

Journal Article

Domer, A.; Jasinska, W.; Rosental, L.; Shochat, E.; Alseekh, S.; Fernie, A. R.; Brotman, Y.; Ovadia, O.: Comparative analysis of the plasma metabolome of migrating passerines: novel insights into stopover metabolism. Journal of Avian Biology 2025 (2), e03331 (2024)

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43.

Journal Article

Fontanet-Manzaneque, J. B.; Laibach, N.; Herrero-García, I.; Coleto-Alcudia, V.; Blasco-Escámez, D.; Zhang, C.; Orduña, L.; Alseekh, S.; Miller, S.; Bjarnholt, N. et al.; Fernie, A. R.; Matus, J. T.; Caño-Delgado, A. I.: Untargeted mutagenesis of brassinosteroid receptor SbBRI1 confers drought tolerance by altering phenylpropanoid metabolism in Sorghum bicolor. Plant Biotechnology Journal 22 (12), pp. 3406 - 3423 (2024)

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44.

Journal Article

He, J.; Hao, Y.; He, Y.; Li, W.; Shi, Y.; Khurshid, M.; Lai, D.; Ma, C.; Wang, X.; Li, J. et al.; Cheng, J.; Fernie, A. R.; Ruan, J.; Zhang, K.; Zhou, M.: Genome-wide associated study identifies FtPMEI13 gene conferring drought resistance in Tartary buckwheat. The Plant Journal 120 (6), pp. 2398 - 2419 (2024)

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45.

Journal Article

Kanojia, A.; Lyall, R.; Sujeeth, N.; Alseekh, S.; Martinez Rivas, F.J.; Fernie, A. R.; Gechev, T.S.; Petrov, V.: Physiological and molecular insights into the effect of a seaweed biostimulant on enhancing fruit yield and drought tolerance in tomato. Plant Stress 14, 100692 (2024)

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46.

Journal Article

Luo, J.; He, C.; Yan, S.; Jiang, C.; Chen, A.; Li, K.; Zhu, Y.; Gui, S.; Yang, N.; Xiao, Y. et al.; Wu, S.; Zhang, F.; Liu, T.; Wang, J.; Huang, W.; Yang, Y.; Wang, H.; Yang, W.; Li, W.; Zhuo, L.; Fernie, A. R.; Zhan, J.; Wang, L.; Yan, J.: A metabolic roadmap of waxy corn flavor. Molecular Plant 17 (12), pp. 1883 - 1898 (2024)

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47.

Journal Article

Mazzarella, T.; Chialva, M.; de Souza, L. P.; Wang, J.Y.; Votta, C.; Tiozon, R.; Vaccino, P.; Salvioli di Fossalunga, A.; Sreenivasulu, N.; Asami, T. et al.; Fernie, A. R.; Al-Babili, S.; Lanfranco, L.; Fiorilli, V.: Effect of exogenous treatment with zaxinone and its mimics on rice root microbiota across different growth stages. Scientific Reports 14, 31374 (2024)

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48.

Journal Article

Tiozon, R. J. N.; Alseekh, S.; Fernie, A. R.; Bonto, A. P.; Yu, J.; Buenafe, R. J. Q.; Sreenivasulu, N.: Comprehensive lipidomic insights of differentially accumulating lipids in large pigmented rice sprout collection and the changes in the starch composition upon germination. Food Chemistry 460 (Part 2), 140677 (2024)

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49.

Journal Article

Wijesingha Ahchige, M.; Fisher, J.; Sokolowska, E.; Lyall, R.; Illing, N.; Skirycz, A.; Zamir, D.; Alseekh, S.; Fernie, A. R.: The variegated canalized-1 tomato mutant is linked to photosystem assembly. Computational and Structural Biotechnology Journal 23, pp. 3967 - 3988 (2024)

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50.

Journal Article

Farag, M.; Baky, M.; Kuehnhold, H.; Kriege, E.; Kunzmann, A.; Alseekh, S.; Al-Hammady, M.; Ezz, S.; Fernie, A. R.; Westphal, H. et al.; Stuhr, M.: Effects of thermal and UV stress on the polar and non-polar metabolome of photosymbiotic jellyfish and sea anemones. Marine Pollution Bulletin 208, 116983 (2024)

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