Book Chapter (27)

901.
Book Chapter
Fernie, A. R.; Tohge, T.: The Genetics of Plant Metabolism. In: Annual Review of Genetics, Vol. 51, pp. 287 - 310. Annual Reviews, Palo Alto (2017)
902.
Book Chapter
Obata, T.; Rosado-Souza, L.; Fernie, A. R.: Coupling radiotracer experiments with chemical fractionation for the estimation of respiratory fluxes. In: Methods in Molecular Biology, Vol. 1670, pp. 17 - 30. Humana Press, Clifton, N.J. (2017)
903.
Book Chapter
Omena-Garcia, R.P.; Araújo, W.L.; Gibon, Y.; Fernie, A. R.; Nunes-Nesi, A.: Measurement of tricarboxylic acid cycle enzyme activities in plants. In: Methods in Molecular Biology, Vol. 1670, pp. 167 - 182. Springer, New York, NY (2017)
904.
Book Chapter
Osorio, S.; Do, P. T.; Fernie, A. R.: Profiling Primary Metabolites of Tomato Fruit with Gas Chromatography/Mass Spectrometry. In: Plant Metabolomics: Methods and Protocols, 2012/02/29 Ed., pp. 101 - 110 (Eds. Hardy, N. W.; Hall, R. D.). Humana Press Inc., Totowa, NJ, USA (2012)
905.
Book Chapter
Osorio, S.; Fernie, A. R.: Plant Systems Biology. In: Systems Biology (Ed. Meyers, R. A.). Wiley-Blackwell (2012)
906.
Book Chapter
Fernie, A. R.; Keurentjes, J. J. B.: Genetics, genomics and metabolomics. In: The biology of plant metabolomics, 8, 2011/05/03 Ed., pp. 219 - 260 (Ed. Hall, R. D.). Blackwell-Wiley, London, UK (2011)
907.
Book Chapter
Fait, A.; Sienkiewicz-Porzucek, A.; Fernie, A. R.: Metabolomics approaches to advance understanding of nitrogen assimilation and carbon nitrogen interactions. In: Nitrogen Metabolism in Plants in the Post-Genomic Era, 10, pp. 249 - 268 (Eds. Foyer, C. H.; Zhang, H.). Wiley-Blackwell, Oxford, UK (2010)
908.
Book Chapter
Erban, A.; Schauer, N.; Fernie, A. R.; Kopka, J.: Nonsupervised construction and application of mass spectral and retention time index libraries from time-of-flight gas chromatography-mass spectrometry metabolite profiles. In: Metabolomics: Methods and Protocols, pp. 19 - 38 (Ed. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)
909.
Book Chapter
Urbanczyk-Wochniak, E.; Willmitzer, L.; Fernie, A. R.: Integrating profiling data: using linear correlation to reveal coregulation of transcript and metabolites. In: Metabolomics: Methods and Protocols, pp. 77 - 85 (Ed. Weckwerth, W.). Humana Press Inc., Totowa, NJ, USA (2007)
910.
Book Chapter
Carrari, F.; Schauer, N.; Willmitzer, L.; Fernie, A. R.: Systems biology: A renaissance of the Top-down approach for plant analysis. In: Plant Metabolomics, pp. 185 - 198 (Eds. Nagata, T.; Lörz, H.; Widholm, J. M.). Springer-Verlag, Heidelberg, GER (2006)
911.
Book Chapter
Geigenberger, P.; Fernie, A. R.: Starch biosynthesis in the potato tuber. In: Food Biochemistry and Food Processing, pp. 253 - 270 (Eds. Hui, Y. H.; Corke, H.; DeLeyn, I.; Nip, W.-K.; Cross, N.). Blackwell Publ., Ames, IA, USA (2006)
912.
Book Chapter
Lytovchenko, A.; Geigenberger, P.; Willmitzer, L.; Fernie, A. R.: Starch content in plant tissues. In: Plant Genetic Engineering: Improving the Nutritional & Therapeutic Qualities of Plants, pp. 1 - 29 (Ed. Jaiwal, P. K.). Studium Press LLC, Houston, TX, USA (2006)
913.
Book Chapter
Fernie, A. R.; Sweetlove, L. J.: Broad range metabolite analysis: integration into genomics programs. In: Experimental standardization of classification of enzyme characteristics (Eds. Ketner, C.; Hicks, M. G.) (2004)
914.
Book Chapter
Fernie, A. R.; Willmitzer, L.: Carbohydrate metabolism. In: The handbook of Plant Biotechnology (Eds. Christou, P.; Klee, H. K.). Wiley, Chichester, UK (2004)
915.
Book Chapter
Urbanczyk-Wochniak, E.; Fernie, A. R.; Willmitzer, L.: The utility of transcriptomics and metabolomics in systems based analysis of plant metabolism. In: Understanding the Plant Genome. (Ed. Sadowski, J.). Institute of Plant Genetics, PAS, Poznan, POL (2004)
916.
Book Chapter
Fernie, A. R.; Roessner, U.; Willmitzer, L.: Metabolic Profiling of Plant Cells. In: Plant Physiology 3rd Edition (Eds. Taiz, L.; Zeiger, E.). Sinauer Associates, Inc., Sunderland, MA, USA (2001)

Conference Paper (6)

917.
Conference Paper
Pick, T. R.; Brautigam, A.; Schulz, M. A.; Obata, T.; Fernie, A. R.; Weber, A. P.: PLGG1, a plastidic glycolate glycerate transporter, is required for photorespiration and defines a unique class of metabolite transporters. Proceedings of the National Academy of Sciences of the United States of America 110, pp. 3185 - 3190 (2013)
918.
Conference Paper
Araujo, W. L.; Trofimova, L.; Yu, K.; Steinhauser, D.; Krall, L.; Fernie, A. R.; Bunik, V. I.: On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in the amino acid metabolism. Amino Acids 41, p. S39 - S39 (2011)
919.
Conference Paper
Urbanczyk-Wochniak, E.; Baxter, C.; Sweetlove, L. J.; Fernie, A. R.: Profiling diurnal changes in metabolite and transcript levels in potato leaves. In: 3rd International Congress on Plant Metabolomics, pp. 183 - 192. 3rd International Congress on Plant Metabolomics, Iowa State Univ, Ames, IA. (2007)
920.
Conference Paper
Willmitzer, L.; Caldana, C.; Fernie, A. R.; Giavalisco, P.; MA, H.; Redestig, H.; Steinhauser, D.: Integrative Analysis of Transcriptome and Metabolome Data. In: Proceedings of the German Conference on Bioinformatics, Vol. 01. Proceedings of the German Conference on Bioinformatics, GCB 2007, Potsdam, Germany, September 26, 2007 - September 28, 2007. (2007)
921.
Conference Paper
Nunes-Nesi, A.; Carrari, F.; Lytovchenko, A.; Fernie, A. R.: Enhancing crop yield in Solanaceous species through the genetic manipulation of energy metabolism. In: BioScience 2005 Conference, pp. 1430 - 1434. BioScience 2005 Conference, Glasgow, SCOTLAND. (2005)
922.
Conference Paper
Fernie, A. R.; Riesmeire, J. W.; Martiny, A.; Ramalingam, S.; Willmitzer, L.; Trethewey, R. N.: Consequences of the expression of a bacterial glucokinase in potato tubers, both in combination with and independently of a yeast-derived invertase. In: Australian Journal of Plant Physiology, pp. 827 - 833. Australian Journal of Plant Physiology. (2000)

Meeting Abstract (5)

923.
Meeting Abstract
Hincha, D. K.; Schulz, E.; Thalhammer, A.; Tohge, T.; Sulpice, R.; Fernie, A. R.; Zuther, E.: The Role of Secondary Metabolites and COR Proteins in Plant Freezing Tolerance. In In Vitro Cellular & Developmental Biology-Animal, 50, p. S13 - S13. Tissue Culture Association, Columbia, MD (2014)
924.
Meeting Abstract
van der Merwe, M. J.; Osorio, S.; Moritz, T.; Nunes-Nesi, A.; Fernie, A. R.: The role and regulation of the tricarboxylic acid cycle in Solanum lycopersicum roots. In South African Journal of Botany, 75 (2), p. 424 - 424. (2009)
925.
Meeting Abstract
Carrari, F.; Fernie, A. R.: Characterizing the metabolic regulation that underlies tomato fruit development. In Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology, 141 (3), p. S297 - S297. (2005)
926.
Meeting Abstract
Ishizaki, K.; Larson, T. A.; Schauer, N.; Fernie, A. R.; Graham, I. A.; Leaver, C. J.: The critical role of Arabidopsis electron-transfer flavoprotein:ubiquinone oxidoreductase during dark-induced starvation. In Plant Cell, 17 (9), pp. 2587 - 2600. (2005)
927.
Meeting Abstract
Urbanczyk-Wochniak, E.; Willmitzer, L.; Fernie, A. R.: mRNA Analysis of Plant Metabolic Regulation: Comparison of Transcript and Metabolic Complements of Developing Plant Tissues. In Acta Physiologiae Plantarum, 26 (3), p. 55 - 55. (2004)

Talk (1)

928.
Talk
Fernie, A. R.: Interview with Alisdair R. Fernie. (2014)

Other (3)

929.
Other
Fernie, A. R.: Systems biology: A new CAM era, Nature Plants, (2016)
930.
Other
Hampp, C.; Richter, A.; Osorio, S.; Zellnig, G.; Sinha, A. K.; Jammer, A.; Fernie, A. R.; Grimm, B.; Roitsch, T.: Establishment of a Photoautotrophic Cell Suspension Culture of Arabidopsis thaliana for Photosynthetic, Metabolic, and Signaling Studies, Molecular Plant 5, pp. 524 - 527 (2012)
931.
Other
Fernie, A. R.; Aharoni, A.; Willmitzer, L.; Stitt, M.; Tohge, T.; Kopka, J.; Carroll, A. J.; Saito, K.; Fraser, P. D.; DeLuca, V.: Recommendations for Reporting Metabolite Data, The Plant Cell 23, pp. 2477 - 2482 (2011)

Editorial (11)

932.
Editorial
Fernie, A. R.; Hashida, S.-N.; Yoshimura, K.; Gakière, B.; Mou, Z.; Pétriacq, P.: Editorial: NAD Metabolism and Signaling in Plants. Frontiers in Plant Science 11, 146 (2020)
933.
Editorial
Fernie, A. R.; Wen, W.: Editorial overview: Evolution of metabolic diversity. Current Opinion in Plant Biology 55, pp. A1 - A4 (2020)
934.
Editorial
Fernie, A. R.: Seeing is believing: the three-way division of labor in the photosynthetic thylakoid membrane. The Plant Journal 97 (3), pp. 410 - 411 (2019)
935.
Editorial
Fernie, A. R.: Making sense of the complex role of the mitochondria in mediating the plant touch response. The Plant Journal 97 (4), pp. 621 - 622 (2019)
936.
Editorial
Fernie, A. R.; Sweetlove, L.: The Plant Journal actively supports Open Science and data transparency. The Plant Journal 97 (3), p. 409 - 409 (2019)
937.
Editorial
Sweetlove, L. J.; Aharoni, A.; Fernie, A. R.: Introducing TPJ Fellowships for early stage Principal Investigators. The Plant Journal 100 (3), p. 435 - 435 (2019)
938.
Editorial
Kopka, J.; Fernie, A. R.: Editorial overview: Plant synthetic and systems biology. Current Opinion in Biotechnology 49, pp. viii - xi (2018)
939.
Editorial
Fernie, A. R.; Pichersky, E.: Focus Issue on Metabolism: Metabolites, Metabolites Everywhere. Plant Physiology 169 (3), pp. 1421 - 1423 (2015)
940.
Editorial
Batushansky, A.; Kirma, M.; Grillich, N.; Toubiana, D.; Pham, P. A.; Balbo, I.; Fromm, H.; Galili, G.; Fernie, A. R.; Fait, A.: Combined Transcriptomics and Metabolomics of Arabidopsis thaliana Seedlings Exposed to Exogenous GABA Suggest Its Role in Plants Is Predominantly Metabolic. Molecular Plant 7 (6), pp. 1065 - 1068 (2014)
941.
Editorial
Fernie, A. R.: Editorial overview - the Computational approaches in aid of advancing understanding in Plant Physiology. Frontiers in Plant Science 2, p. 78 (2011)
942.
Editorial
Kopka, J.; Fernie, A. R.; Weckwerth, W.; Gibon, Y.; Stitt, M.: Metabolite profiling in plant biology: platforms and destinations. Genome Biology 5 (6), p. 109 (2004)

Review Article (4)

943.
Review Article
Maeda, H. A.; Fernie, A. R.: Evolutionary History of Plant Metabolism. (2021)
944.
Review Article
Alseekh, S.; Scossa, F.; Wen, W.; Luo, J.; Yan, J.; Beleggia, R.; Klee, H. J.; Huang, S.; Papa, R.; Fernie, A. R.: Domestication of Crop Metabolomes: Desired and Unintended Consequences. (2021)
945.
Review Article
Medeiros, D.B.; Brotman, Y.; Fernie, A. R.: The utility of metabolomics as a tool to inform maize biology. (2021)
946.
Review Article
Zhang, Y.; Fernie, A. R.: Metabolons, Enzyme-Enzyme Assemblies that Mediate Substrate Channeling, and Their Roles in Plant Metabolism. (2021)
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