Complete publication list

Publications of Alisdair Fernie

Journal Article (46)

  1. 1.
    Journal Article
    Bunik, V. I.; Artiukhov, A.; Kazantsev, A.; Goncalves, R.; Daloso, D. M.; Oppermann, H.; Kulakovskaya, E.; Lukashev, N.; Fernie, A. R.; Brand, M. et al.; Gaunitz, F.: Specific inhibition by synthetic analogs of pyruvate reveals that the pyruvate dehydrogenase reaction is essential for metabolism and viability of glioblastoma cells. ONCOTARGET 6 (37), pp. 40036 - 40052 (2015)
  2. 2.
    Journal Article
    Daloso, D. M.; Antunes, W. C.; Pinheiro, D. P.; Waquim, J. P.; Araujo, W. L.; Loureiro, M. E.; Fernie, A. R.; Williams, T. C. R.: Tobacco guard cells fix CO2 by both Rubisco and PEPcase while sucrose acts as a substrate during light-induced stomatal opening. Plant, Cell and Environment 38 (11), pp. 2353 - 2371 (2015)
  3. 3.
    Journal Article
    Liang, C.; Zhang, Y.; Cheng, S.; Osorio, S.; Sun, Y.; Fernie, A. R.; Cheung, C. Y. M.; Lim, B. L.: Impacts of high ATP supply from chloroplasts and mitochondria on the leaf metabolism of Arabidopsis thaliana. Frontiers in Plant Science 6, 922 (2015)
  4. 4.
    Journal Article
    Monne, M.; Miniero, D. V.; Obata, T.; Daddabbo, L.; Palmieri, L.; Vozza, A.; Nicolardi, M. C.; Fernie, A. R.; Palmieri, F.: Functional characterization and organ distribution of three mitochondrial ATP-Mg/P-i carriers in Arabidopsis thaliana. Biochimica et Biophysica Acta-Bioenergetics 1847 (10), pp. 1220 - 1230 (2015)
  5. 5.
    Journal Article
    Batushansky, A.; Kirma, M.; Grillich, N.; Pham, P. A.; Rentsch, D.; Galili, G.; Fernie, A. R.; Fait, A.: The transporter GAT1 plays an important role in GABA-mediated carbon-nitrogen interactions in Arabidopsis. Frontiers in Plant Science 6, 785 (2015)
  6. 6.
    Journal Article
    Rosado-Souza, L.; Scossa, F.; Chaves, I. S.; Kleessen, S.; Salvador, L. F. D.; Milagre, J. C.; Finger, F.; Bhering, L. L.; Sulpice, R.; Araujo, W. L. et al.; Nikoloski, Z.; Fernie, A. R.; Nunes-Nesi, A.: Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicum chinense accessions. Planta 242 (3), pp. 677 - 691 (2015)
  7. 7.
    Journal Article
    Colling, J.; Tohge, T.; De Clercq, R.; Brunoud, G.; Vernoux, T.; Fernie, A. R.; Makunga, N. P.; Goossens, A.; Pauwels, L.: Overexpression of the Arabidopsis thaliana signalling peptide TAXIMIN1 affects lateral organ development. (2015)
  8. 8.
    Journal Article
    Fettke, J.; Fernie, A. R.: Intracellular and cell-to-apoplast compartmentation of carbohydrate metabolism. Trends in Plant Science 20 (8), pp. 490 - 497 (2015)
  9. 9.
    Journal Article
    Gerlach, N.; Schmitz, J.; Polatajko, A.; Schlueter, U.; Fahnenstich, H.; Witt, S.; Fernie, A. R.; Uroic, K.; Scholz, U.; Sonnewald, U. et al.; Bucher, M.: An integrated functional approach to dissect systemic responses in maize to arbuscular mycorrhizal symbiosis. Plant, Cell and Environment 38 (8), pp. 1591 - 1612 (2015)
  10. 10.
    Journal Article
    Kuehn, K.; Obata, T.; Feher, K.; Bock, R.; Fernie, A. R.; Meyer, E. H.: Complete Mitochondrial Complex I Deficiency Induces an Up-Regulation of Respiratory Fluxes That Is Abolished by Traces of Functional Complex I. Plant Physiology 168 (4), pp. 1537 - 1549 (2015)
  11. 11.
    Journal Article
    Medeiros, D. B.; Daloso, D. M.; Fernie, A. R.; Nikoloski, Z.; Araujo, W. L.: Utilizing systems biology to unravel stomatal function and the hierarchies underpinning its control. Plant, Cell and Environment 38 (8), pp. 1457 - 1470 (2015)
  12. 12.
    Journal Article
    Schulz, E.; Tohge, T.; Zuther, E.; Fernie, A. R.; Hincha, D. K.: Natural variation in flavonol and anthocyanin metabolism during cold acclimation in Arabidopsis thaliana accessions. Plant, Cell and Environment 38 (8), pp. 1658 - 1672 (2015)
  13. 13.
    Journal Article
    Timm, S.; Wittmiss, M.; Gamlien, S.; Ewald, R.; Florian, A.; Frank, M.; Wirtz, M.; Hell, R.; Fernie, A. R.; Bauwea, H.: Mitochondrial Dihydrolipoyl Dehydrogenase Activity Shapes Photosynthesis and Photorespiration of Arabidopsis thaliana. Plant Cell 27 (7), pp. 1968 - 1984 (2015)
  14. 14.
    Journal Article
    Benard, C.; Bernillon, S.; Biais, B.; Osorio, S.; Maucourt, M.; Ballias, P.; Deborde, C.; Colombie, S.; Cabasson, C.; Jacob, D. et al.; Vercambre, G.; Gautier, H.; Rolin, D.; Genard, M.; Fernie, A. R.; Gibon, Y.; Moing, A.: Metabolomic profiling in tomato reveals diel compositional changes in fruit affected by source-sink relationships. Journal of Experimental Botany 66 (11), pp. 3391 - 3404 (2015)
  15. 15.
    Journal Article
    Daloso, D. M.; Müller, K.; Obata, T.; Florian, A.; Tohge, T.; Bottcher, A.; Riondet, C.; Banat, L.; Carrari, F.; Nunes-Nesi, A. et al.; Buchanan, B. B.; Reichheld, J.-P.; Araujo, W. L.; Fernie, A. R.: Thioredoxin, a master regulator of the tricarboxylic acid cycle in plant mitochondria. Proceedings of the National Academy of Sciences of the USA 112 (11), pp. E1392 - E1400 (2015)
  16. 16.
    Journal Article
    López, M.; Zanor, M.; Pratta, G.; Stegmayer, G.; Boggio, S.; Conte, M.; Bermúdez, L.; Coluccio Leskow, C.; Rodríguez, G.; Picardi, L. et al.; Zorzoli, R.; Fernie, A. R.; Milone, D.; Asís, R.; Valle, E.; Carrari, F.: Metabolic analyses of interspecific tomato recombinant inbred lines for fruit quality improvement. Metabolomics, pp. 1 - 16 (2015)
  17. 17.
    Journal Article
    Amaya, I.; Osorio, S.; Martinez-Ferri, E.; Lima-Silva, V.; Doblas, V. G.; Fernandez-Munoz, R.; Fernie, A. R.; Botella, M. A.; Valpuesta, V.: Increased antioxidant capacity in tomato by ectopic expression of the strawberry D-galacturonate reductase gene. BIOTECHNOLOGY JOURNAl 10 (3), pp. 490 - 500 (2015)
  18. 18.
    Journal Article
    Obata, T.; Geigenberger, P.; Fernie, A. R.: Redox control of plant energy metabolism - the complex intertwined regulation of redox and metabolism in plant cells. The Biochemist 37, pp. 14 - 18 (2015)
  19. 19.
    Journal Article
    Allorent, G.; Osorio, S.; Vu, J. L.; Falconet, D.; Jouhet, J.; Kuntz, M.; Fernie, A. R.; Lerbs-Mache, S.; Macherel, D.; Courtois, F. et al.; Finazzi, G.: Adjustments of embryonic photosynthetic activity modulate seed fitness in Arabidopsis thaliana. New Phytologist 205 (2), pp. 707 - 719 (2015)
  20. 20.
    Journal Article
    Alseekh, S.; Tohge, T.; Wendenburg, R.; Scossa, F.; Omranian, N.; Li, J.; Kleessen, S.; Giavalisco, P.; Pleban, T.; Mueller-Roeber, B. et al.; Zamir, D.; Nikoloski, Z.; Fernie, A. R.: Identification and mode of inheritance of quantitative trait Loci for secondary metabolite abundance in tomato. The Plant Cell 27 (3), pp. 485 - 512 (2015)
  21. 21.
    Journal Article
    Anoman, A. D.; Munoz-Bertomeu, J.; Rosa-Tellez, S.; Flores-Tornero, M.; Serrano, R.; Bueso, E.; Fernie, A. R.; Segura, J.; Ros, R.: Plastidial Glycolytic Glyceraldehyde-3-Phosphate Dehydrogenase Is an Important Determinant in the Carbon and Nitrogen Metabolism of Heterotrophic Cells in Arabidopsis. Plant Physiology 169 (3), pp. 1619 - 1637 (2015)
  22. 22.
    Journal Article
    Avin-Wittenberg, T.; Bajdzienko, K.; Wittenberg, G.; Alseekh, S.; Tohge, T.; Bock, R.; Giavalisco, P.; Fernie, A. R.: Global Analysis of the Role of Autophagy in Cellular Metabolism and Energy Homeostasis in Arabidopsis Seedlings under Carbon Starvation. The Plant Cell 27 (2), pp. 306 - 322 (2015)
  23. 23.
    Journal Article
    Bromke, M. A.; Hochmuth, A.; Tohge, T.; Fernie, A. R.; Giavalisco, P.; Burgos, A.; Willmitzer, L.; Brotman, Y.: Liquid chromatography high-resolution mass spectrometry for fatty acid profiling. The Plant Journal 81 (3), pp. 529 - 536 (2015)
  24. 24.
    Journal Article
    Eastmond, P. J.; Astley, H. M.; Parsley, K.; Aubry, S.; Williams, B. P.; Menard, G. N.; Craddock, C. P.; Nunes-Nesi, A.; Fernie, A. R.; Hibberd, J. M.: Arabidopsis uses two gluconeogenic gateways for organic acids to fuel seedling establishment. Nature Communications 6, 6659 (2015)
  25. 25.
    Journal Article
    Engqvist, M. K. M.; Schmitz, J.; Gertzmann, A.; Florian, A.; Jaspert, N.; Arif, M.; Balazadeh, S.; Mueller-Roeber, B.; Fernie, A. R.; Maurino, V. G.: GLYCOLATE OXIDASE3, a Glycolate Oxidase Homolog of Yeast l-Lactate Cytochrome c Oxidoreductase, Supports l-Lactate Oxidation in Roots of Arabidopsis. Plant Physiology 169 (2), pp. 1042 - 61 (2015)
  26. 26.
    Journal Article
    Fernie, A. R.; Toth, S. Z.: Identification of the Elusive Chloroplast Ascorbate Transporter Extends the Substrate Specificity of the PHT Family. Molecular Plant 8 (5), pp. 674 - 676 (2015)
  27. 27.
    Journal Article
    Fernie, A. R.; Tohge, T.: A cross-kingdom history. eLife 4, e07527 (2015)
  28. 28.
    Journal Article
    Fernie, A. R.; Tohge, T.: Location, location, location - no more! The unravelling of chromatin remodeling regulatory aspects of plant metabolic gene clusters. New Phytologist 205 (2), pp. 458 - 460 (2015)
  29. 29.
    Journal Article
    Fly, R.; Lloyd, J.; Krueger, S.; Fernie, A. R.; van der Merwe, M. J.: Improvements to define mitochondrial metabolomics using nonaqueous fractionation. Methods in Molecular Biology 1305, pp. 197 - 210 (2015)
  30. 30.
    Journal Article
    Harb, J.; Alseekh, S.; Tohge, T.; Fernie, A. R.: Profiling of primary metabolites and flavonols in leaves of two table grape varieties collected from semiarid and temperate regions. Phytochemistry 117, pp. 444 - 455 (2015)
  31. 31.
    Journal Article
    Heise, R.; Fernie, A. R.; Stitt, M.; Nikoloski, Z.: Pool size measurements facilitate the determination of fluxes at branching points in non-stationary metabolic flux analysis: the case of Arabidopsis thaliana. Frontiers in Plant Science 6, 386 (2015)
  32. 32.
    Journal Article
    Ishihara, H.; Obata, T.; Sulpice, R.; Fernie, A. R.; Stitt, M.: Quantifying Protein Synthesis and Degradation in Arabidopsis by Dynamic 13CO2 Labeling and Analysis of Enrichment in Individual Amino Acids in Their Free Pools and in Protein. Plant Physiology 168 (1), pp. 74 - 93 (2015)
  33. 33.
    Journal Article
    Lotkowska, M. E.; Tohge, T.; Fernie, A. R.; Xue, G.-P.; Balazadeh, S.; Mueller-Roeber, B.: The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress. Plant Cell Physiology 169 (3), pp. 1862 - 1880 (2015)
  34. 34.
    Journal Article
    Obata, T.; Witt, S.; Lisec, J.; Palacios-Rojas, N.; Florez-Sarasa, I. D.; Yousfi, S.; Araus, J. L.; Cairns, J. E.; Fernie, A. R.: Metabolite Profiles of Maize Leaves in Drought, Heat, and Combined Stress Field Trials Reveal the Relationship between Metabolism and Grain Yield. Plant Physiology 169 (4), pp. 2665 - 2683 (2015)
  35. 35.
    Journal Article
    Omranian, N.; Kleessen, S.; Tohge, T.; Klie, S.; Basler, G.; Mueller-Roeber, B.; Fernie, A. R.; Nikoloski, Z.: Differential metabolic and coexpression networks of plant metabolism. Trends in Plant Science 20 (5), pp. 266 - 268 (2015)
  36. 36.
    Journal Article
    Pham, P. A.; Wahl, V.; Tohge, T.; de Souza, L. P.; Zhang, Y.; Do, P. T.; Olas, J. J.; Stitt, M.; Araujo, W. L.; Fernie, A. R.: Analysis of knockout mutants reveals non-redundant functions of poly(ADP-ribose)polymerase isoforms in Arabidopsis. Plant Molecular Biology 89 (4-5), pp. 319 - 338 (2015)
  37. 37.
    Journal Article
    Sade, D.; Shriki, O.; Cuadros-Inostroza, A. C.; Tohge, T.; Semel, Y.; Haviv, Y.; Willmitzer, L.; Fernie, A. R.; Czosnek, H.; Brotman, Y.: Comparative metabolomics and transcriptomics of plant response to Tomato yellow leaf curl virus infection in resistant and susceptible tomato cultivars. Metabolomics 11 (1), pp. 81 - 97 (2015)
  38. 38.
    Journal Article
    Tohge, T.; Scossa, F.; Fernie, A. R.: Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation. Plant Physiology 169 (3), pp. 1499 - 1511 (2015)
  39. 39.
    Journal Article
    Tohge, T.; Zhang, Y.; Peterek, S.; Matros, A.; Rallapalli, G.; Tandron, Y. A.; Butelli, E.; Kallam, K.; Hertkorn, N.; Mock, H.-P. et al.; Martin, C.; Fernie, A. R.: Ectopic expression of snapdragon transcription factors facilitates the identification of genes encoding enzymes of anthocyanin decoration in tomato. The Plant Journal 83 (4), pp. 686 - 704 (2015)
  40. 40.
    Journal Article
    Tohge, T.; Fernie, A. R.: Metabolomics-Inspired Insight into Developmental, Environmental and Genetic Aspects of Tomato Fruit Chemical Composition and Quality. Plant & cell physiology 56 (9), pp. 1681 - 1896 (2015)
  41. 41.
    Journal Article
    Toubiana, D.; Batushansky, A.; Tzfadia, O.; Scossa, F.; Khan, A.; Barak, S.; Zamir, D.; Fernie, A. R.; Nikoloski, Z.; Fait, A.: Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds. The Plant Journal 81 (1), pp. 121 - 133 (2015)
  42. 42.
    Journal Article
    Vallarino, J. G.; Osorio, S.; Bombarely, A.; Casanal, A.; Cruz-Rus, E.; Sanchez-Sevilla, J. F.; Amaya, I.; Giavalisco, P.; Fernie, A. R.; Botella, M. A. et al.; Valpuesta, V.: Central role of FaGAMYB in the transition of the strawberry receptacle from development to ripening. The New phytologist 208 (2), pp. 482 - 496 (2015)
  43. 43.
    Journal Article
    Wang, T.; Tohge, T.; Ivakov, A.; Mueller-Roeber, B.; Fernie, A. R.; Mutwil, M.; Schippers, J. H. M.; Persson, S.: Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiology 169 (2), pp. 1027 - 1041 (2015)
  44. 44.
    Journal Article
    Weiwei, W.; Li, K.; Alseekh, S.; Omranian, N.; Zhao, L.; Zhou, Y.; Xiao, Y.; Jin, M.; Yang, N.; Liu, H. et al.; Florian, A.; Li, W.; Pan, Q.; Nikoloski, Z.; Yan, J.; Fernie, A. R.: Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population. The Plant Cell 27 (7), pp. 1839 - 1856 (2015)
  45. 45.
    Journal Article
    Zhang, Y.; Butelli, E.; Alseekh, S.; Tohge, T.; Rallapalli, G.; Luo, J.; Kawar, P. G.; Hill, L.; Santino, A.; Fernie, A. R. et al.; Martin, C.: Multi-level engineering facilitates the production of phenylpropanoid compounds in tomato. Nature communications 6, 8635 (2015)
  46. 46.
    Journal Article
    Zuchi, S.; Watanabe, M.; Hubberten, H. M.; Bromke, M. A.; Osorio, S.; Fernie, A. R.; Celletti, S.; Paolacci, A. R.; Catarcione, G.; Ciaffi, M. et al.; Hoefgen, R.; Astolfi, S.: The Interplay between Sulfur and Iron Nutrition in Tomato. Plant Physiology 169 (4), pp. 2624 - 2639 (2015)

Editorial (1)

  1. 47.
    Editorial
    Fernie, A. R.; Pichersky, E.: Focus Issue on Metabolism: Metabolites, Metabolites Everywhere. Plant Physiology 169 (3), pp. 1421 - 1423 (2015)
 
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