Publications of Alisdair Fernie
Journal Article (51)
1.
Journal Article
4, 499 (2013)
Comparative metabolic profiling of Haberlea rhodopensis, Thellungiella halophyla, and Arabidopsis thaliana exposed to low temperature. Frontiers in Plant Science 2.
Journal Article
164 (2), pp. 907 - 921 (2013)
Double knock-out mutants of Arabidopsis thaliana grown under normal conditions reveal that the plastidial phosphorylase isozyme (PHS1) participates in transitory starch metabolism. Plant Physiology 3.
Journal Article
8 (11), e27104 (2013)
The essential role of the phosphorylated pathway of serine biosynthesis in Arabidopsis. Plant Signaling & Behavior 4.
Journal Article
64 (16), pp. 5049 - 5063 (2013)
Metabolic analysis of kiwifruit (Actinidia deliciosa) berries from extreme genotypes reveals hallmarks for fruit starch metabolism. Journal of Experimental Botany 5.
Journal Article
163 (3), pp. 1164 - 1178 (2013)
Functional Characterization of the Plastidial 3-Phosphoglycerate Dehydrogenase Family in Arabidopsis. Plant Physiology 6.
Journal Article
18 (10), pp. 536 - 538 (2013)
Resolution by recombination: breaking up Solanum pennellii introgressions. Trends in Plant Science 7.
Journal Article
76 (2), pp. 258 - 273 (2013)
MULTIPASS, a rice R2R3-type MYB transcription factor, regulates adaptive growth by integrating multiple hormonal pathways. Plant Journal 8.
Journal Article
37 (3), pp. 601 - 616 (2013)
Deciphering the metabolic pathways influencing heat and cold responses during post-harvest physiology of peach fruit. Plant, Cell and Environment 9.
Journal Article
4, 198 (2013)
Molecular regulation of fruit ripening. Frontiers in Plant Science 10.
Journal Article
25 (6), pp. 2084 - 2101 (2013)
The Phosphorylated Pathway of Serine Biosynthesis Is Essential Both for Male Gametophyte and Embryo Development and for Root Growth in Arabidopsis. The Plant Cell 11.
Journal Article
25 (6), pp. 2253 - 2264 (2013)
Arabidopsis BPM Proteins Function as Substrate Adaptors to a CULLIN3-Based E3 Ligase to Affect Fatty Acid Metabolism in Plants. The Plant Cell 12.
Journal Article
25 (6), pp. 2022 - 2036 (2013)
Evolution of a Complex Locus for Terpene Biosynthesis in Solanum. The Plant Cell 13.
Journal Article
25 (6), pp. 2115 - 2131 (2013)
SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species-Dependent Signaling during the Initial Response to Salt Stress in Rice. The Plant Cell 14.
Journal Article
162 (1), pp. 239 - 253 (2013)
Transcriptomic Analysis of the Role of Carboxylic Acids in Metabolite Signaling in Arabidopsis Leaves. Plant Physiology 15.
Journal Article
25 (4), pp. 1197 - 1211 (2013)
Integration of Genome-Scale Modeling and Transcript Profiling Reveals Metabolic Pathways Underlying Light and Temperature Acclimation in Arabidopsis. The Plant Cell 16.
Journal Article
44 (2), pp. 683 - 700 (2013)
On the role of the mitochondrial 2-oxoglutarate dehydrogenase complex in amino acid metabolism. Amino Acids 17.
Journal Article
6 (2), pp. 581 - 584 (2013)
Analysis of the interface between primary and secondary metabolism in Catharanthus roseus cell cultures using 13C-stable isotope feeding and coupled mass spectrometry. Molecular Plant 18.
Journal Article
8 (3), e58588 (2013)
BRAHMA ATPase of the SWI/SNF Chromatin Remodeling Complex Acts as a Positive Regulator of Gibberellin-Mediated Responses in Arabidopsis. PLoS One 19.
Journal Article
25 (1), pp. 288 - 307 (2013)
Orchestration of Thiamin Biosynthesis and Central Metabolism by Combined Action of the Thiamin Pyrophosphate Riboswitch and the Circadian Clock in Arabidopsis. The Plant Cell 20.
Journal Article
9 (3), e1003221 (2013)
Trichoderma-Plant Root Colonization: Escaping Early Plant Defense Responses and Activation of the Antioxidant Machinery for Saline Stress Tolerance. PLoS Pathogens 21.
Journal Article
73 (6), pp. 897 - 909 (2013)
Systemic Analysis of Inducible Target of Rapamycin Mutants Reveal a General Metabolic Switch Controlling Growth in Arabidopsis thaliana. The Plant Journal 22.
Journal Article
64 (8), pp. 2449 - 2466 (2013)
Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato. Journal of Experimental Botany 23.
Journal Article
8 (1), p. e22523 (2013)
Metabolic alterations triggered by silicon nutrition: Is there a signaling role for silicon? Plant Signaling & Behavior 24.
Journal Article
205-206, pp. 87 - 96 (2013)
Identification of candidate genes for phenolic accumulation in tomato fruit. Plant Science 25.
Journal Article
161 (3), pp. 1486 - 1500 (2013)
Asr1 Mediates Glucose-Hormone Crosstalk by Affecting Sugar Trafficking in Tobacco Plants. Plant Physiology 26.
Journal Article
36 (9), pp. 1738 - 1750 (2013)
Analysis of metabolic flux using dynamic labeling and metabolic modeling. Plant, Cell and Environment 27.
Journal Article
14 (6), 119 (2013)
Plastic, fantastic! Phenotypic variance in the transcriptional landscape of the grape berry. Genome Biology 28.
Journal Article
4, p. 48 (2013)
The plant transcriptome – from integrating observations to models. Frontiers in Plant Science 29.
Journal Article
36 (1), pp. 159 - 175 (2013)
A diminution in ascorbate oxidase activity affects carbon allocation and improves yield in tomato under water deficit. Plant Cell and Environment 30.
Journal Article
64 (2), pp. 553 - 868 (2013)
The form of nitrogen nutrition affects resistance against Pseudomonas syringae pv. phaseolicola in tobacco. Journal of Experimental Botany 31.
Journal Article
110 (28), pp. E2655 - E2662 (2013)
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proceedings of the National Academy of Sciences of the United States of America 32.
Journal Article
65C, pp. 17 - 26 (2013)
Virus-induced gene silencing of pea CHLI and CHLD affects tetrapyrrole biosynthesis, chloroplast development and the primary metabolic network. Plant physiology and biochemistry 33.
Journal Article
64 (14), pp. 4421 - 4439 (2013)
Ethylene is involved in strawberry fruit ripening in an organ-specific manner. Journal of experimental botany 34.
Journal Article
161 (1), pp. 397 - 407 (2013)
Metabolic engineering of tomato fruit organic Acid content guided by biochemical analysis of an introgression line. Plant Physiology 35.
Journal Article
16 (3), pp. 335 - 343 (2013)
Regulation of the mitochondrial tricarboxylic acid cycle. Current Opinion in Plant Biology 36.
Journal Article
3 (1), pp. 168 - 184 (2013)
Gas-Chromatography Mass-Spectrometry (GC-MS) Based Metabolite Profiling Reveals Mannitol as a Major Storage Carbohydrate in the Coccolithophorid Alga Emiliania huxleyi. Metabolites 37.
Journal Article
4 (2013)
Pyrophosphate levels strongly influence ascorbate and starch content in tomato fruit. Frontiers in Plant Science 38.
Journal Article
161 (2), pp. 628 - 643 (2013)
Alteration of the interconversion of pyruvate and malate in the plastid or cytosol of ripening tomato fruit invokes diverse consequences on sugar but similar effects on cellular organic Acid, metabolism, and transitory starch accumulation. Plant Physiology 39.
Journal Article
162 (3), pp. 1246 - 1265 (2013)
Diurnal changes of polysome loading track sucrose content in the rosette of wildtype Arabidopsis and the starchless pgm mutant. Plant Physiology 40.
Journal Article
15 (4), pp. 754 - 758 (2013)
Engineering photorespiration: current state and future possibilities. Plant Biology 41.
Journal Article
81 (3), pp. 309 - 325 (2013)
Transcriptional regulation of tocopherol biosynthesis in tomato. Plant Molecular Biology 42.
Journal Article
6 (5), pp. 1707 - 1710 (2013)
Involvement of the hexose transporter gene LeHT1 and of sugars in resistance of tomato to Tomato yellow leaf curl virus. Molecular Plant 43.
Journal Article
72, pp. 21 - 34 (2013)
The flavonoid biosynthetic pathway in Arabidopsis: Structural and genetic diversity. Plant Physiology and Biochemistry 44.
Journal Article
64 (8), pp. 2231 - 2242 (2013)
Chloroplast-localized 6-phosphogluconate dehydrogenase is critical for maize endosperm starch accumulation. Journal of Experimental Botany 45.
Journal Article
162 (1), pp. 347 - 363 (2013)
Impact of the carbon and nitrogen supply on relationships and connectivity between metabolism and biomass in a broad panel of Arabidopsis accessions. Plant Physiology 46.
Journal Article
64, pp. 723 - 746 (2013)
The Spatial Organization of Metabolism Within the Plant Cell. Annual Review of Plant Biology 47.
Journal Article
25 (2), pp. 694 - 714 (2013)
Metabolic Fluxes in an Illuminated Arabidopsis Rosette. The Plant Cell 48.
Journal Article
73 (1), pp. 118 - 130 (2013)
Activation of R-mediated innate immunity and disease susceptibility is affected by mutations in a cytosolic O-acetylserine (thiol) lyase in Arabidopsis. The Plant Journal 49.
Journal Article
162 (1), pp. 379 - 389 (2013)
Serine acts as metabolic signal for the transcriptional control of photorespiration-related genes in Arabidopsis thaliana. Plant Physiology 50.
Journal Article
4, p. 62 (2013)
Shikimate and phenylalanine biosynthesis in the green lineage. Frontiers in Plant Science