Publications of Alisdair Fernie

601.

Journal Article

Scossa, F.; Fernie, A. R.: How fruit ripening is ENCODEd. Nature Plants 4 (10), pp. 744 - 745 (2018)

602.

Journal Article

Shimizu, T.; Watanabe, M.; Fernie, A. R.; Tohge, T.: Targeted LC-MS Analysis for Plant Secondary Metabolites. Methods in Molecular Biology 1778, pp. 171 - 182 (2018)

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603.

Journal Article

Shnaider, Y.; Mitra, D.; Miller, G.; Baniel, A.; Doniger, T.; Kuhalskaya, A.; Scossa, F.; Fernie, A. R.; Brotman, Y.; Perl-Treves, R.: Cucumber ovaries inhibited by dominant fruit express a dynamic developmental program, distinct from either senescence-determined or fruit-setting ovaries. The Plant Journal 96 (3), pp. 651 - 669 (2018)

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604.

Journal Article

Sonnewald, U.; Fernie, A. R.: Next-generation strategies for understanding and influencing source-sink relations in crop plants. Current Opinion in Plant Biology 43, pp. 63 - 70 (2018)

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605.

Journal Article

Sung, J.; Yun, H.; Back, S.; Fernie, A. R.; Kim, Y. X.; Lee, Y.; Lee, S.; Lee, D.; Kim, J.: Changes in mineral nutrient concentrations and C-N metabolism in cabbage shoots and roots following macronutrient deficiency. Journal of Plant Nutrition and Soil Science 181 (5), pp. 777 - 786 (2018)

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606.

Journal Article

Sweetlove, L. J.; Fernie, A. R.: The role of dynamic enzyme assemblies and substrate channelling in metabolic regulation. Nature Communications 9, 2136 (2018)

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607.

Journal Article

Timm, S.; Giese, J.; Engel, N.; Wittmiß, M.; Florian, A.; Fernie, A. R.; Bauwe, H.: T-protein is present in large excess over the other proteins of the glycine cleavage system in leaves of Arabidopsis. Planta 247 (1), pp. 41 - 51 (2018)

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608.

Journal Article

Tohge, T.; de Souza, L. P.; Fernie, A. R.: On the natural diversity of phenylacylated-flavonoid and their in planta function under conditions of stress. Phytochemistry Reviews 17 (2 ), pp. 279 - 290 (2018)

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609.

Journal Article

Tohge, T.; de Souza, L. P.; Fernie, A. R.: Current understanding of the pathways of flavonoid biosynthesis in model and crop plants. Journal of Experimental Botany 69 (18), p. 4497 - 4497 (2018)

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610.

Journal Article

Tohge, T.; de Souza, L. P.; Fernie, A. R.: Corrigendum: Current understanding of the pathways of flavonoid biosynthesis in model and crop plants. Journal of Experimental Botany 69 (18), 4497 (2018)

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611.

Journal Article

Vallarino, J. G.; de Abreu e Lima, F.; Soria, C.; Tong, H.; Pott, D. M.; Willmitzer, L.; Fernie, A. R.; Nikoloski, Z.; Osorio, S.: Genetic diversity of strawberry germplasm using metabolomic biomarkers. Scientific Reports 8 (1), 14386 (2018)

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612.

Journal Article

Watanabe, M.; Netzer, F.; Tohge, T.; Orf, I.; Brotman, Y.; Dubbert, D.; Fernie, A. R.; Rennenberg, H.; Hoefgen, R.; Herschbach, C.: Metabolome and Lipidome Profiles of Populus x canescens Twig Tissues During Annual Growth Show Phospholipid- Linked Storage and Mobilization of C, N, and S. Frontiers in Plant Science 9, 1292 (2018)

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613.

Journal Article

Watanabe, M.; Tohge, T.; Fernie, A. R.; Hoefgen, R.: The Effect of Single and Multiple SERAT Mutants on Serine and Sulfur Metabolism. Frontiers in Plant Science 9, 702 (2018)

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614.

Journal Article

Wen, W.; Jin, M.; Li, K.; Liu, H.; Xiao, Y.; Zhao, M.; Alseekh, S.; Li, W.; de Abreu e Lima, F.; Brotman, Y. et al.; Willmitzer, L.; Fernie, A. R.; Yan, J.: An integrated multi-layered analysis of the metabolic networks of different tissues uncovers key genetic components of primary metabolism in maize. The Plant Journal 93 (6), pp. 1116 - 1128 (2018)

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615.

Journal Article

Wu, S.; Tohge, T.; Cuadros-Inostroza, A. C.; Tong, H.; Tenenboim, H.; Kooke, R.; Méret, M.; Keurentjes, J. B.; Nikoloski, Z.; Fernie, A. R. et al.; Willmitzer, L.; Brotman, Y.: Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions. Molecular Plant 11 (1), pp. 118 - 134 (2018)

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616.

Journal Article

Yoshida, T.; Fernie, A. R.: Remote Control of Transpiration via ABA. Trends in Plant Science 23 (9), pp. 755 - 758 (2018)

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617.

Journal Article

Zhang, Y.; Fernie, A. R.: On the role of the tricarboxylic acid cycle in plant productivity. Journal of Integrative Plant Biology 60 (12 - SI), pp. 1199 - 1216 (2018)

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618.

Journal Article

Zhang, Y.; Giuliani, R.; Zhang, Y.; Zhang, Y.; Araujo, W. L.; Wang, B.; Liu, P.; Sun, Q.; Cousins, A.; Edwards, G. et al.; Fernie, A. R.; Brutnell, T. P.; Li, P.: Characterization of maize leaf pyruvate orthophosphate dikinase using high throughput sequencing. Journal of Integrative Plant Biology 60 (8), pp. 670 - 690 (2018)

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619.

Journal Article

Zhang, Y.; Swart, C.; Alseekh, S.; Scossa, F.; Jiang, L.; Obata, T.; Graf, A.; Fernie, A. R.: The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions. Plant Physiology 177 (3), pp. 966 - 979 (2018)

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620.

Journal Article

Zhang, Y.; Zhang, Y.; McFarlane, H. E.; Obata, T.; Richter, A. S.; Lohse, M.; Grimm, B.; Persson, S.; Fernie, A. R.; Giavalisco, P.: Inhibition of TOR Represses Nutrient Consumption, Which Improves Greening after Extended Periods of Etiolation. Plant Physiology 178 (1), pp. 101 - 117 (2018)

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621.

Journal Article

Zhu, G.; Wang, S.; Huang, Z.; Zhang, S.; Liao, Q.; Zhang, C.; Lin, T.; Qin, M.; Peng, M.; Yang, C. et al.; Cao, X.; Han, X.; Wang, X.; van der Knaap, E.; Zhang, Z.; Cui, X.; Klee, H.; Fernie, A. R.; Luo, J.; Huang, S.: Rewiring of the Fruit Metabolome in Tomato Breeding. Cell 172 (1), pp. 249 - 261.e12 (2018)

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622.

Journal Article

Borghi, M.; Fernie, A. R.: Floral Metabolism of Sugars and Amino Acids: Implications for Pollinators’ Preferences and Seed and Fruit Set. Plant Physiology 175 (4), pp. 1510 - 1524 (2017)

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623.

Journal Article

Jorge, T. F.; Duro, N.; da Costa, M.; Florian, A.; Ramalho, J. C.; Ribeiro-Barros, A. I.; Fernie, A. R.; António, C.: GC-TOF-MS analysis reveals salt stress-responsive primary metabolites in Casuarina glauca tissues. Metabolomics 13 (8), 95 (2017)

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624.

Journal Article

Alseekh, S.; Tong, H.; Scossa, F.; Brotman, Y.; Vigroux, F.; Tohge, T.; Ofner, I.; Zamir, D.; Nikoloski, Z.; Fernie, A. R.: Canalization of Tomato Fruit Metabolism. Plant Cell 29 (11), pp. 2753 - 2765 (2017)

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625.

Journal Article

Arrivault, S.; Obata, T.; Szecówka, M.; Mengin, V.; Guenther, M.; Höhne, M.; Fernie, A. R.; Stitt, M.: Metabolite pools and carbon flow during C4 photosynthesis in maize: 13CO2 labeling kinetics and cell type fractionation. Journal of Experimental Botany 68, pp. 283 - 298 (2017)

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626.

Journal Article

Barros, J. A. S.; Cavalcanti, J. H. F.; Medeiros, D. B.; Nunes-Nesi, A.; Avin-Wittenberg, T.; Fernie, A. R.; Araujo, W. L.: Autophagy Deficiency Compromises Alternative Pathways of Respiration following Energy Deprivation in Arabidopsis thaliana. Plant Physiology 175 (1), pp. 62 - 76 (2017)

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627.

Journal Article

Barros, J. A. S.; Cavalcanti, J. H. F.; Medeiros, D. B.; Nunes-Nesi, A.; Avin-Wittenberg, T.; Fernie, A. R.; Araujo, W. L.: Commonalities and differences in plants deficient in autophagy and alternative pathways of respiration on response to extended darkness. Plant Signaling & Behavior 12 (11), e1377877 (2017)

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628.

Journal Article

Daloso, D. M.; Medeiros, D.B.; dos Anjos, L.; Yoshida, T.; Araujo, W. L.; Fernie, A. R.: Metabolism within the specialized guard cells of plants. New Phytologist 216 (4), pp. 1018 - 1033 (2017)

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629.

Journal Article

Eisenhut, M.; Bräutigam, A.; Timm, S.; Florian, A.; Tohge, T.; Fernie, A. R.; Bauwe, H.; Weber, A. P.M.: Photorespiration is crucial to the dynamic response of photosynthetic metabolism and stomatal movement to altered \CO2\ availability. Molecular Plant 10 (1), pp. 47 - 61 (2017)

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630.

Journal Article

Esteves-Ferreira, A. A.; Inaba, M.; Obata, T.; Fort, A.; Fleming, G. T. A.; Araujo, W. L.; Fernie, A. R.; Sulpice, R.: A Novel Mechanism, Linked to Cell Density, Largely Controls Cell Division in Synechocystis. Plant Physiology 174 (4), pp. 2166 - 2182 (2017)

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631.

Journal Article

Estrada-Johnson, E.; Csukasi, F.; Pizarro, C. M.; Vallarino, J. G.; Kiryakova, Y.; Vioque, A.; Brumos, J.; Medina-Escobar, N.; Botella, M. A.; Alonso, J. M. et al.; Fernie, A. R.; Sanchez-Sevilla, J. F.; Osorio, S.; Valpuesta, V.: Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle. Frontiers in Plant Science 8, 889 (2017)

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632.

Journal Article

Estrada-Johnson, E.; Csukasi, F.; Pizarro, C. M.; Vallarino, J. G.; Kiryakova, Y.; Vioque, A.; Merchante, C.; Brumos, J.; Medina-Escobar, N.; Botella, M. A. et al.; Alonso, J. M.; Fernie, A. R.; Sánchez-Sevilla, J. F.; Osorio, S.; Valpuesta, V.: Corrigendum: Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle. Frontiers in Plant Science 8, 1305 (2017)

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633.

Journal Article

Fernandez Del-Saz, N.; Ribas-Carbo, M.; Martorell, G.; Fernie, A. R.; Florez-Sarasa, I. D.: Measurements of Electron Partitioning Between Cytochrome and Alternative Oxidase Pathways in Plant Tissues. Plant Respiration and Internal Oxygen: Methods and Protocols, pp. 203 - 217 (2017)

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634.

Journal Article

Flores-Tornero, M.; Anoman, A. D.; Rosa-Tellez, S.; Toujani, W.; Weber, A. P. M.; Eisenhut, M.; Kurz, S.; Alseekh, S.; Fernie, A. R.; Munoz-Bertomeu, J. et al.; Ros, R.: Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde-3-phosphate dehydrogenase mutants. The Plant Journal 89 (6), pp. 1146 - 1158 (2017)

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635.

Journal Article

Fluegel, F.; Timm, S.; Arrivault, S.; Florian, A.; Stitt, M.; Fernie, A. R.; Bauwe, H.: The Photorespiratory Metabolite 2-Phosphoglycolate Regulates Photosynthesis and Starch Accumulation in Arabidopsis. The Plant Cell 29 (10), pp. 2537 - 2551 (2017)

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636.

Journal Article

Gago, J.; Fernie, A. R.; Nikoloski, Z.; Tohge, T.; Martorell, S.; Mariano Escalona, J.; Ribas-Carbo, M.; Flexas, J.; Medrano, H.: Integrative field scale phenotyping for investigating metabolic components of water stress within a vineyard. Plant Methods 13, 90 (2017)

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637.

Journal Article

Han, X.; Tohge, T.; Lalor, P.; Dockery, P.; Devaney, N.; Esteves-Ferreira, A. A.; Fernie, A. R.; Sulpice, R.: Phytochrome A and B Regulate Primary Metabolism in Arabidopsis Leaves in Response to Light. Frontiers in Plant Science 8, 1394 (2017)

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638.

Journal Article

Ishiga, Y.; Watanabe, M.; Ishiga, T.; Tohge, T.; Matsuura, T.; Ikeda , Y.; Hoefgen, R.; Fernie, A. R.; Mysore, K.S.: The SAL-PAP Chioroplast Retrograde Pathway Contributes to Plant Immunity by Regulating Glucosinolate Pathway and Phytohormone Signaling. Molecular Plant-Microbe Interactions 30 (10), pp. 829 - 841 (2017)

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639.

Journal Article

Ishihara, H.; Moraes, T. A.; Pyl, E. T.; Schulze, W. X.; Obata, T.; Scheffel, A.; Fernie, A. R.; Sulpice, R.; Stitt, M.: Growth rate correlates negatively with protein turnover in Arabidopsis accessions. The Plant Journal 91 (3), pp. 416 - 429 (2017)

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640.

Journal Article

Jin, M.; Zhang, X.; Zhao, M.; Deng, M.; Du, Y.; Zhou, Y.; Wang, S.; Tohge, T.; Fernie, A. R.; Willmitzer, L. et al.; Brotman, Y.; Yan, J.; Weiwei, W.: Integrated genomics-based mapping reveals the genetics underlying maize flavonoid biosynthesis. BMC Plant Biology 17 (1), 17 (2017)

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641.

Journal Article

Joshi, V.; Fernie, A. R.: Citrulline metabolism in plants. Amino Acids 49 (9), pp. 1543 - 1559 (2017)

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642.

Journal Article

Kudo, M.; Kidokoro, S.; Yoshida, T.; Mizoi, J.; Todaka, D.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants. Plant Biotechnology Journal 15 (4), pp. 458 - 471 (2017)

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643.

Journal Article

Malinova, I.; Alseekh, S.; Feil, R.; Fernie, A. R.; Baumann, O.; Schöttler, M. A.; Lunn, J. E.; Fettke, J.: Starch synthase 4 and plastidal phosphorylase differentially affect starch granule number and morphology. Plant Physiology 174 (1), pp. 73 - 85 (2017)

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644.

Journal Article

Matthijs, M.; Fabris, M.; Obata, T.; Foubert, I.; Franco‐Zorrilla, J. M.; Solano, R.; Fernie, A. R.; Vyverman, W.; Goossens, A.: The transcription factor bZIP14 regulates the TCA cycle in the diatom Phaeodactylum tricornutum. EMBO Journal 36 (8), pp. 959 - 1116 (2017)

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645.

Journal Article

Medeiros, D.B.; Barros, K. A.; Barros, J. A. S.; Omena-Garcia, R. P.; Arrivault, S.; Sanglard, L. M. V. P.; Detmann, K. C.; Silva, W. B.; Daloso, D. M.; DaMatta, F. M. et al.; Nunes-Nesi, A.; Fernie, A. R.; Araujo, W. L.: Impaired Malate and Fumarate Accumulation Due to the Mutation of the Tonoplast Dicarboxylate Transporter Has Little Effects on Stomatal Behavior. Plant Physiology 175 (3), pp. 1068 - 1081 (2017)

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646.

Journal Article

Menezes-Silva, P. E.; Sanglard, L. M. V. P.; Avila, R. T.; Morais, L. E.; Martins, S. C. V.; Nobres, P.; Patreze, C. M.; Ferreira, M. A.; Araujo, W. L.; Fernie, A. R. et al.; DaMatta, F. M.: Photosynthetic and metabolic acclimation to repeated drought events play key roles in drought tolerance in coffee. Journal of Experimental Botany 68 (15), pp. 4309 - 4322 (2017)

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647.

Journal Article

Modde, K.; Timm, S.; Florian, A.; Michl, K.; Fernie, A. R.; Bauwe, a. H.: High serine:glyoxylate aminotransferase activity lowers leaf daytime serine levels, inducing the phosphoserine pathway in Arabidopsis. Journal of Experimental Botany 68 (3), pp. 643 - 656 (2017)

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648.

Journal Article

Nelson, D. R.; Khraiwesh, B.; Fu, W.; Alseekh, S.; Jaiswal, A.; Chaiboonchoe, A.; Hazzouri, K. M.; O'Connor, M. J.; Butterfoss, G. L.; Drou, N. et al.; Rowe, J. D.; Harb, J.; Fernie, A. R.; Gunsalus, K. C.; Salehi-Ashtiani, K.: The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization. eLife 6, e25783 (2017)

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649.

Journal Article

Obata, T.; Rosado-Souza, L.; Fernie, A. R.: Coupling Radiotracer Experiments with Chemical Fractionation for the Estimation of Respiratory Fluxes. Plant Respiration and Internal Oxygen: Methods and Protocols, pp. 17 - 30 (2017)

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650.

Journal Article

Omena-Garcia, R. P.; Araujo, W. L.; Gibon, Y.; Fernie, A. R.; Nunes-Nesi, A.: Measurement of Tricarboxylic Acid Cycle Enzyme Activities in Plants. Plant Respiration and Internal Oxygen: Methods and Protocols, pp. 167 - 182 (2017)

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Journal Article (1112)