Complete publication list

Complete list on the external MPG.PuRe Server

The list on this site only contains publications of Dr. Alisdair Fernie which were produced at the MPIMP.

To find the complete list of publications please use the link above (MPG.PuRe).

Publications of Alisdair Fernie

All years

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Journal Article (661)

551.

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Journal Article
Sweetlove, L. J.; Fell, D.; Fernie, A. R.: Getting to grips with the plant metabolic network. Biochemical Journal 409 (1), pp. 27 - 41 (2008)
552.

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Timm, S.; Nunes-Nesi, A.; Pamik, T.; Morgenthal, K.; Wienkoop, S.; Keerberg, O.; Weckwerth, W.; Kleczkowski, L. A.; Fernie, A. R.; Bauwe, H.: A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis. The Plant Cell 20 (10), pp. 2848 - 2859 (2008)
553.

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Weigelt, K.; Kuester, H.; Radchuk, R.; Mueller, M.; Weichert, H.; Fait, A.; Fernie, A. R.; Saalbach, I.; Weber, H.: Increasing amino acid supply in pea embryos reveals specific interactions of N and C metabolism, and highlights the importance of mitochondrial metabolism. The Plant Journal 55 (6), pp. 909 - 926 (2008)
554.

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Alhagdow, M.; Mounet, F.; Gilbert, L.; Nunes-Nesi, A.; Garcia, V.; Just, D.; Petit, J.; Beauvoit, B.; Fernie, A. R.; Rothan, C. et al.; Baldet, P.: Silencing of the mitochondrial ascorbate synthesizing enzyme L-galactono-1,4-lactone dehydrogenase affects plant and fruit development in tomato(1[w][OA]). Plant Physiology 145 (4), pp. 1408 - 1422 (2007)
555.

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Baxter, C. J.; Redestig, H.; Schauer, N.; Repsilber, D.; Patil, K. R.; Nielsen, J.; Selbig, J.; Liu, J. L.; Fernie, A. R.; Sweetlove, L. J.: The metabolic response of heterotrophic Arabidopsis cells to oxidative stress. Plant Physiology 143 (1), pp. 312 - 325 (2007)
556.

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Baxter, C. J.; Liu, J. L.; Fernie, A. R.; Sweetlove, L. J.: Determination of metabolic fluxes in a non-steady-state system. Phytochemistry 68 (16-18), pp. 2313 - 2319 (2007)
557.

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Ding, L.; Hofius, D.; Hajirezaei, M.-R.; Fernie, A. R.; Bornke, F.; Sonnewald, U.: Functional analysis of the essential bifunctional tobacco enzyme 3-dehydroquinate dehydratase/shikimate dehydrogenase in transgenic tobacco plants. Journal of Experimental Botany 58 (8), pp. 2053 - 2067 (2007)
558.

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Fahnenstich, H.; Saigo, M.; Niessen, M.; Zanor, M. I.; Andreo, C. S.; Fernie, A. R.; Drincovich, M. F.; Flugge, U. I.; Maurino, V. G.: Alteration of organic acid metabolism in Arabidopsis overexpressing the maize C(4)NADP-malic enzyme causes accelerated senescence during extended darkness. Plant Physiology 145 (3), pp. 640 - 652 (2007)
559.

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Fernie, A. R.: The future of metabolic phytochemistry: Larger numbers of metabolites, higher resolution, greater understanding. Phytochemistry 68 (22-24), pp. 2861 - 2880 (2007)
560.

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Footitt, S.; Dietrich, D.; Fait, A.; Fernie, A. R.; Holdsworth, M. J.; Baker, A.; Theodoulou, F. L.: The COMATOSE ATP-binding cassette transporter is required for full fertility in arabidopsis. Plant Physiology 144 (3), pp. 1467 - 1480 (2007)
561.

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Frankel, N.; Nunes-Nesi, A.; Balbo, I.; Mazuch, J.; Centeno, D.; Iusem, N. D.; Fernie, A. R.; Carrari, F.: ci21A/Asr1 expression influences glucose accumulation in potato tubers. Plant Molecular Biology 63 (5), pp. 719 - 730 (2007)
562.

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Graham, J. W.; Williams, T. C.; Morgan, M.; Fernie, A. R.; Ratcliffe, R. G.; Sweetlove, L. J.: Glycolytic enzymes associate dynamically with mitochondria in response to respiratory demand and support substrate channeling. Plant Cell 19 (11), pp. 3723 - 3738 (2007)
563.

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Lemaitre, T.; Urbanczyk-Wochniak, E.; Flesch, V.; Bismuth, E.; Fernie, A. R.; Hodges, M.: NAD-dependent isocitrate dehydrogenase mutants of arabidopsis suggest the enzyme is not limiting for nitrogen assimilation. Plant Physiology 144 (3), pp. 1546 - 1558 (2007)
564.

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Lytovchenko, A.; Sonnewald, U.; Fernie, A. R.: The complex network of non-cellulosic carbohydrate metabolism. Current Opinion in Plant Biology 10 (3), pp. 227 - 235 (2007)
565.

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Messerli, G.; Nia, V. P.; Trevisan, M.; Kolbe, A.; Schauer, N.; Geigenberger, P.; Chen, J. C.; Davison, A. C.; Fernie, A. R.; Zeeman, S. C.: Rapid classification of phenotypic mutants of arabidopsis via metabolite fingerprinting. Plant Physiology 143 (4), pp. 1484 - 1492 (2007)
566.

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Nunes-Nesi, A.; Sweetlove, L. J.; Fernie, A. R.: Operation and function of the tricarboxylic acid cycle in the illuminated leaf. Physiologia Plantarum 129 (1), pp. 45 - 56 (2007)
567.

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Nunes-Nesi, A.; Carrari, F.; Gibon, Y.; Sulpice, R.; Lytovchenko, A.; Fisahn, J.; Graham, J.; Ratcliffe, R. G.; Sweetlove, L. J.; Fernie, A. R.: Deficiency of mitochondrial fumarase activity in tomato plants impairs photosynthesis via an effect on stomatal function. Plant Journal 50 (6), pp. 1093 - 1106 (2007)
568.

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Raschke, M.; Buerkle, L.; Mueller, N.; Nunes-Nesi, A.; Fernie, A. R.; Arigoni, D.; Amrhein, N.; Fitzpatrick, T. B.: Vitamin B1 biosynthesis in plants requires the essential iron sulfur cluster protein, THIC. Proceedings of the National Academy of Sciences of the United States of America 104 (49), pp. 19637 - 19642 (2007)
569.

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Saladie, M.; Matas, A. J.; Isaacson, T.; Jenks, M. A.; Goodwin, S. M.; Niklas, K. J.; Xiaolin, R.; Labavitch, J. M.; Shackel, K. A.; Fernie, A. R. et al.; Lytovchenko, A.; O'Neill, M. A.; Watkins, C. B.; Rose, J. K. C.: A reevaluation of the key factors that influence tomato fruit softening and integrity. Plant Physiology 144 (2), pp. 1012 - 1028 (2007)
570.

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Semel, Y.; Schauer, N.; Roessner, U.; Zamir, D.; Fernie, A. R.: Metabolite analysis for the comparison of irrigated and non-irrigated field grown tomato of varying genotype. Metabolomics 3 (3), pp. 289 - 295 (2007)
571.

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Steuer, R.; Nesi, A. N.; Fernie, A. R.; Gross, T.; Blasius, B.; Selbig, J.: From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics 23 (11), pp. 1378 - 1385 (2007)
572.

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Studart-Guimaraes, C.; Fait, A.; Nunes-Nesi, A.; Carrari, F.; Usadel, B.; Fernie, A. R.: Reduced Expression of Succinyl CoA Ligase can be Compensated for by an Upregulation of the {gamma}-amino-butyrate (GABA) Shunt in Illuminated Tomato Leaves. Plant Physiology 145 (3), pp. 626 - 639 (2007)
573.

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Sweetlove, L. J.; Fait, A.; Nunes-Nesi, A.; Williams, T.; Fernie, A. R.: The mitochondrion: An integration point of cellular metabolism and signalling. Critical Reviews in Plant Sciences 26 (1), pp. 17 - 43 (2007)
574.

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Szymanski, J.; Bielecka, M.; Carrari, F.; Fernie, A. R.; Hoefgen, R.; Nikiforova, V. J.: On the processing of metabolic information through metabolite-gene communication networks: an approach for modelling causality. Phytochemistry 68 (16-18), pp. 2163 - 2175 (2007)
575.

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Carrari, F.; Fernie, A. R.: Metabolic regulation underlying tomato fruit development. Journal of Experimental Botany 57 (9), pp. 1883 - 1897 (2006)
576.

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Carrari, F.; Baxter, C.; Usadel, B.; Urbanczyk-Wochniak, E.; Zanor, M. I.; Nunes-Nesi, A.; Nikiforova, V.; Centero, D.; Ratzka, A.; Pauly, M. et al.; Sweetlove, L. J.; Fernie, A. R.: Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiology 142 (4), pp. 1380 - 1396 (2006)
577.

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Fait, A.; Angelovici, R.; Less, H.; Ohad, I.; Urbanczyk-Wochniak, E.; Fernie, A. R.; Galili, G.: Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiology 142 (3), pp. 839 - 854 (2006)
578.

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Farre, E. M.; Tech, S.; Trethewey, R. N.; Fernie, A. R.; Willmitzer, L.: Subcellular pyrophosphate metabolism in developing tubers of potato (Solanum tuberosum). Plant Molecular Biology 62 (1-2), pp. 165 - 179 (2006)
579.

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Fernie, A. R.; Tadmor, Y.; Zamir, D.: Natural genetic variation for improving crop quality. Current Opinion in Plant Biology 9 (2), pp. 196 - 202 (2006)
580.

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Hackel, A.; Schauer, N.; Carrari, F.; Fernie, A. R.; Grimm, B.; Kuhn, C.: Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways. Plant Journal 45 (2), pp. 180 - 192 (2006)
581.

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Hajirezaei, M.-R.; Biemelt, S.; Peisker, M.; Lytovchenko, A.; Fernie, A. R.; Sonnewald, U.: The influence of cytosolic phosphorylating glyceraldehyde 3-phosphate dehydrogenase (GAPC) on potato tuber metabolism. Journal of Experimental Botany 57 (10), pp. 2363 - 2377 (2006)
582.

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Ishizaki, K.; Schauer, N.; Larson, T. R.; Graham, I. A.; Fernie, A. R.; Leaver, C. J.: The mitochondrial electron transfer flavoprotein complex is essential for survival of Arabidopsis in extended darkness. Plant Journal 47 (5), pp. 751 - 760 (2006)
583.

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Joshi, V.; Laubengayer, K. M.; Schauer, N.; Fernie, A. R.; Jander, G.: Two Arabidopsis threonine aldolases are nonredundant and compete with threonine deaminase for a common substrate pool. Plant Cell 18 (12), pp. 3564 - 3575 (2006)
584.

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Junker, B. H.; Wuttke, R.; Nunes-Nesi, A.; Steinhauser, D.; Schauer, N.; Buessis, D.; Willmitzer, L.; Fernie, A. R.: Enhancing vacuolar sucrose cleavage within the developing potato tuber has only minor effects on metabolism. Plant and Cell Physiology 47 (2), pp. 277 - 289 (2006)
585.

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Kolbe, A.; Oliver, S. N.; Fernie, A. R.; Stitt, M.; van Dongen, J. T.; Geigenberger, P.: Combined transcript and metabolite profiling of Arabidopsis leaves reveals fundamental effects of the thiol-disulfide status on plant metabolism. Plant Physiology 141 (2), pp. 412 - 422 (2006)
586.

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Lisec, J.; Schauer, N.; Kopka, J.; Willmitzer, L.; Fernie, A. R.: Gas chromatography mass spectrometry-based metabolite profiling in plants. Nature Protocols 1 (1), pp. 387 - 396 (2006)
587.

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Palmieri, L.; Arrigoni, R.; Blanco, E.; Carrari, F.; Zanor, M. I.; Studart-Guimaraes, C.; Fernie, A. R.; Palmieri, F.: Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization. Plant Physiology 142 (3), pp. 855 - 865 (2006)
588.

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Schauer, N.; Semel, Y.; Roessner, U.; Gur, A.; Balbo, I.; Carrari, F.; Pleban, T.; Perez-Melis, A.; Bruedigam, C.; Kopka, J. et al.; Willmitzer, L.; Zamir, D.; Fernie, A. R.: Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nature Biotechnology 24 (4), pp. 447 - 454 (2006)
589.

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Schauer, N.; Fernie, A. R.: Plant metabolomics: towards biological function and mechanism. Trends in Plant Science 11 (10), pp. 508 - 516 (2006)
590.

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Steinfath, M.; Repsilber, D.; Hische, M.; Schauer, N.; Fernie, A. R.; Selbig, J.: Metabolite profiles as a reflection of physiological status - a methodological validation. Journal of Integrative Bioinformatics 3, pp. 2 - 18 (2006)
591.

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Sweetlove, L. J.; Lytovchenko, A.; Morgan, M.; Nunes-Nesi, A.; Taylor, N. L.; Baxter, C. J.; Eickmeier, I.; Fernie, A. R.: Mitochondrial uncoupling protein is required for efficient photosynthesis. Proceedings of the National Academy of Sciences of the United States of America 103 (51), pp. 19587 - 19592 (2006)
592.

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Tieman, D.; Taylor, M.; Schauer, N.; Fernie, A. R.; Hanson, A. D.; Klee, H. J.: Tomato aromatic amino acid decarboxylases participate in synthesis of the flavor volatiles 2-phenylethanol and 2-phenylacetaldehyde. Proceedings of the National Academy of Sciences of the United States of America 103 (21), pp. 8287 - 8292 (2006)
593.

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Urbanczyk-Wochniak, E.; Usadel, B.; Thimm, O.; Nunes-Nesi, A.; Carrari, F.; Davy, M.; Blaesing, O.; Kowalczyk, M.; Weicht, D.; Polinceusz, A. et al.; Meyer, S.; Stitt, M.; Fernie, A. R.: Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: Effects of genetic and environmental alterations in energy metabolism in the leaf. Plant Molecular Biology 60 (5), pp. 773 - 792 (2006)
594.

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Usadel, B.; Nagel, A.; Steinhauser, D.; Gibon, Y.; Blaesing, O. E.; Redestig, H.; Sreenivasulu, N.; Krall, L.; Hannah, M. A.; Poree, F. et al.; Fernie, A. R.; Stitt, M.: PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments. BMC Bioinformatics 7, p. 535 (2006)
595.

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Wagner, S.; Bernhardt, A.; Leuendorf, J. E.; Drewke, C.; Lytovchenko, A.; Mujahed, N.; Gurgui, C.; Frommer, W. B.; Leistner, E.; Fernie, A. R. et al.; Hellmann, H.: Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis. Plant Cell 18 (7), pp. 1722 - 1735 (2006)
596.

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Baxter, C. J.; Carrari, F.; Bauke, A.; Overy, S.; Hill, S. A.; Quick, W. P.; Fernie, A. R.; Sweetlove, L. J.: Fruit carbohydrate metabolism in an introgression line of tomato with increased fruit soluble solids. Plant and Cell Physiology 46 (3), pp. 425 - 437 (2005)
597.

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Carrari, F.; Coll-Garcia, D.; Schauer, N.; Lytovchenko, A.; Palacios-Rojas, N.; Balbo, I.; Rosso, M.; Fernie, A. R.: Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth. Plant Physiology 137 (1), pp. 70 - 82 (2005)
598.

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Davies, H. V.; Shepherd, L. V. T.; Burrell, M. M.; Carrari, F.; Urbanczyk-Wochniak, E.; Leisse, A.; Hancock, R. D.; Taylor, M.; Viola, R.; Ross, H. et al.; McRae, D.; Willmitzer, L.; Fernie, A. R.: Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology 46 (7), pp. 1103 - 1115 (2005)
599.

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Fernie, A. R.; Geigenberger, P.; Stitt, M.: Flux an important, but neglected, component of functional glenomics. Current Opinion in Plant Biology 8 (2), pp. 174 - 182 (2005)
600.

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Geigenberger, P.; Regierer, B.; Nunes-Nesi, A.; Leisse, A.; Urbanczyk-Wochniak, E.; Springer, F.; van Dongen, J. T.; Kossmann, J.; Fernie, A. R.: Inhibition of de novo pyrimidine synthesis in growing potato tubers leads to a compensatory stimulation of the pyrimidine salvage pathway and a subsequent increase in biosynthetic performance. Plant Cell 17 (7), pp. 2077 - 2088 (2005)

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