Publications of Alisdair Fernie

Max Planck Institute of Molecular Plant Physiology

Journal Article (1112)

651.

Journal Article

Peng, M.; Shahzad, R.; Gul, A.; Subthain, H.; Shen, S.; Lei, L.; Zheng, Z.; Zhou, J.; Lu, D.; Wang, S. et al.; Nishawy, E.; Liu, X.; Tohge, T.; Fernie, A. R.; Luo, J.: Differentially evolved glucosyltransferases determine natural variation of rice flavone accumulation and UV-tolerance. Nature Communications 8, 1975 (2017)

MPG.PuRe

652.

Journal Article

Poplawski, P.; Tohge, T.; Boguslawska, J.; Rybicka, B.; Tanski, Z.; Trevino, V.; Fernie, A. R.; Piekielko-Witkowska, A.: Integrated transcriptomic and metabolomic analysis shows that disturbances in metabolism of tumor cells contribute to poor survival of RCC patients. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease 1863 (3), pp. 744 - 752 (2017)

MPG.PuRe

653.

Journal Article

Robaina-Estévez, S.; Daloso, D. M.; Zhang, Y.; Fernie, A. R.; Nikoloski, Z.: Resolving the central metabolism of Arabidopsis guard cells. Scientific Reports 7, 8307 (2017)

MPG.PuRe

654.

Journal Article

Romero-Munar, A.; Del-Saz, N. F.; Ribas-Carbó, M.; Flexas, J.; Baraza, E.; Florez-Sarasa, I. D.; Fernie, A. R.; Gulías, J.: Arbuscular mycorrhizal symbiosis with Arundo donax decreases root respiration and increases both photosynthesis and plant biomass accumulation. Plant Cell Environment 40 (7), pp. 1115 - 1126 (2017)

MPG.PuRe

655.

Journal Article

Ru, L.; Osorio, S.; Wang, L.; Fernie, A. R.; Patrick, J.W.; Ruan, Y.-L.: Transcriptomic and metabolomics responses to elevated cell wall invertase activity during tomato fruit set. Journal of Experimental Botany 68 (15), pp. 4263 - 4279 (2017)

MPG.PuRe

656.

Journal Article

Schmidt, M. H. -.; Vogel, A.; Denton, A. K.; Istace, B.; Wormit, A.; van de Geest, H.; Bolger, M. E.; Alseekh, S.; Mass, J.; Pfaff, C. et al.; Schurr, U.; Chetelat, R.; Maumus, F.; Aury, J.-M.; Koren, S.; Fernie, A. R.; Zamir, D.; Bolger, A. M.; Usadel, B.: De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing. The Plant Cell 29 (10), pp. 2336 - 2348 (2017)

MPG.PuRe

657.

Journal Article

Shahnejat-Bushehri, S.; Allu, A. D.; Mehterov, N.; Thirumalaikumar, V. P.; Alseekh, S.; Fernie, A. R.; Mueller-Roeber, B.; Balazadeh, S.: Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Frontiers in Plant Science 8, 214 (2017)

MPG.PuRe

658.

Journal Article

Smirnova, J.; Fernie, A. R.; Spahn, C. M.T.; Steup, M.: Photometric assay of maltose and maltose-forming enzyme activity by using 4-alpha-glucanotransferase (DPE2) from higher plants. Analytical Biochemistry 532, pp. 72 - 82 (2017)

MPG.PuRe

659.

Journal Article

Stein, O.; Avin-Wittenberg, T.; Krahnert, I.; Zemach, H.; Bogol, V.; Daron, O.; Aloni, R.; Fernie, A. R.; Granot, D.: Arabidopsis fructokinases are important for seed oil accumulation and vascular development. Frontiers in Plant Science 7, 2047 (2017)

MPG.PuRe

660.

Journal Article

Stein, O.; Avin-Wittenberg, T.; Krahnert, I.; Zemach, H.; Bogol, V.; Daron, O.; Aloni, R.; Fernie, A. R.; Granot, D.: Corrigendum: Arabidopsis Fructokinases Are Important for Seed Oil Accumulation and Vascular Development. Frontiers in Plant Science 8, 303 (2017)

MPG.PuRe

661.

Journal Article

Svetaz, L. A.; Bustamante, C. A.; Goldy, C.; Rivero, N.; Müller, G. L.; Valentini, G. H.; Fernie, A. R.; Drincovich, M. F.; Lara, M. V.: Unraveling early events in the Taphrina deformans – Prunus persica interaction: an insight into the differential responses in resistant and susceptible genotypes. Plant, Cell and Environment 40 (8), pp. 1456 - 1473 (2017)

MPG.PuRe

662.

Journal Article

Sweetlove, L. J.; Nielsen, J.; Fernie, A. R.: Engineering central metabolism - a grand challenge for plant biologists. The Plant Journal 90, pp. 749 - 763 (2017)

MPG.PuRe

663.

Journal Article

Tanou, G.; Minas, I. S.; Scossa, F.; Belghazi, M.; Xanthopoulou, A.; Ganopoulos, I.; Madesis, P.; Fernie, A. R.; Molassiotis, A.: Exploring priming responses involved in peach fruit acclimation to cold stress. Scientific Reports 7, 11358 (2017)

MPG.PuRe

664.

Journal Article

Todaka, D.; Zhao, Y.; Yoshida, T.; Kudo, M.; Kidokoro, S.; Mizoi, J.; Kodaira, K.-S.; Takebayashi, Y.; Kojima, M.; Sakakibara, H. et al.; Toyooka, K.; Sato, M.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: Temporal and spatial changes in gene expression, metabolite accumulation and phytohormone content in rice seedlings grown under drought stress conditions. The Plant Journal 90 (1), pp. 61 - 78 (2017)

MPG.PuRe

665.

Journal Article

Tohge, T.; Fernie, A. R.: An Overview of Compounds Derived from the Shikimate and Phenylpropanoid Pathways and Their Medicinal Importance. Mini-Reviews in Medicinal Chemistry 17, pp. 1013 - 1027 (2017)

MPG.PuRe

666.

Journal Article

Tohge, T.; Fernie, A. R.: Leveraging Natural Variance towards Enhanced Understanding of Phytochemical Sunscreens. Trends in Plant Science 22 (4), pp. 308 - 315 (2017)

MPG.PuRe

667.

Journal Article

Vallarino, J. G.; Yeats, T. H.; Maximova, E.; Rose, J. K.; Fernie, A. R.; Osorio, S.: Postharvest changes in LIN5-down-regulated plants suggest a role for sugar deficiency in cuticle metabolism during ripening. Phytochemistry 142, pp. 11 - 20 (2017)

MPG.PuRe

668.

Journal Article

Vidal-Meireles, A.; Neupert, J.; Zsigmond, L.; Rosado-Souza, L.; Kovács, L.; Nagy, V.; Galambos, A.; Fernie, A. R.; Bock, R.; Tóth, S. Z.: Regulation of ascorbate biosynthesis in green algae has evolved to enable rapid stress-induced response via the VTC2 gene encoding GDP-l-galactose phosphorylase. New Phytologist 214 (2), pp. 668 - 681 (2017)

MPG.PuRe

669.

Journal Article

Villanova, V.; Fortunato, A.E.; Singh, D.; Bo, D.D.; Conte, M.; Obata, T.; Jouhet, J.; Fernie, A. R.; Marechal, E.; Falciatore, A. et al.; Pagliardini, J.; Le Monnier, A.; Poolman, M.; Curien, G.; Petroutsos, D.; Finazzi, G.: Investigating mixotrophic metabolism in the model diatom phaeodactylum tricornutum. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences 372 (1728), 20160404 (2017)

MPG.PuRe

670.

Journal Article

Yang, J.; Moeinzadeh, M.-H.; Kuhl, H.; Helmuth, J.; Xiao, P.; Haas, S.; Liu, G.; Zheng, J.; Sun, Z.; Fan, W. et al.; Deng, G.; Wang, H.; Hu, F.; Zhao, S.; Fernie, A. R.; Boerno, S.; Timmermann, B.; Zhang, P.; Vingron, M.: Haplotype-resolved sweet potato genome traces back its hexaploidization history. Nature Plants 3 (9), pp. 696 - 703 (2017)

MPG.PuRe

671.

Journal Article

Zhang, Y.; Beard, K. F. M.; Swart, C.; Bergmann, S.; Krahnert, I.; Nikoloski, Z.; Graf, A.; Ratcliffe, R. G.; Sweetlove, L. J.; Fernie, A. R. et al.; Obata, T.: Protein-protein interactions and metabolite channelling in the plant tricarboxylic acid cycle. Nature Communications 8, 15212 (2017)

MPG.PuRe

672.

Journal Article

Zhu, F.-Y.; Chen, M.-X.; Ye, N.-H.; Shi, L.; Ma, K.-L.; Yang, J.-F.; Cao, Y.-Y.; Zhang, Y.; Yoshida, T.; Fernie, A. R. et al.; Fan, G.-Y.; Wen, B.; Zhou, R.; Liu, T.-Y.; Fan, T.; Gao, B.; Zhang, D.; Hao, G.-F.; Xiao, S.; Liu, Y.-G.; Zhang, J.: Proteogenomic analysis reveals alternative splicing and translation as part of the abscisic acid response in Arabidopsis seedlings. The Plant Journal 91 (3), pp. 518 - 533 (2017)

MPG.PuRe

673.

Journal Article

Zhu, X.; Yu, J.; Shi, J.; Tohge, T.; Fernie, A. R.; Meir, S.; Aharoni, A.; Xu, D.; Zhang, D.; Liang, W.: The polyketide synthase OsPKS2 is essential for pollen exine and Ubisch body patterning in rice. Journal of Integrative Plant Biology 59 (9), pp. 612 - 628 (2017)

MPG.PuRe

674.

Journal Article

Wen, W.; Brotman, Y.; Willmitzer, L.; Yan, J.; Fernie, A. R.: Broadening Our Portfolio in the Genetic Improvement of Maize Chemical Composition. Trends in Genetics 32 (8), pp. 459 - 469 (2016)

MPG.PuRe

675.

Journal Article

Li, Z.; Fernie, A. R.; Persson, S.: Transition of primary to secondary cell wall synthesis. Science Bulletin 61 (11), pp. 838 - 846 (2016)

MPG.PuRe

676.

Journal Article

Bunik, V.; Mkrtchyan, G.; Grabarska, A.; Oppermann, H.; Daloso, D. M.; Araujo, W. L.; Juszczak, M.; Rzeski, W.; Bettendorff, L.; Fernie, A. R. et al.; Meixensberger, J.; Stepulak, A.; Gaunitz, F.: Inhibition of mitochondrial 2-oxoglutarate dehydrogenase impairs viability of cancer cells in a cell-specific metabolism-dependent manner. Oncotarget 7 (18), pp. 26400 - 26421 (2016)

MPG.PuRe

677.

Journal Article

Betti, M.; Bauwe, H.; Busch, F. A.; Fernie, A. R.; Keech, O.; Levey, M.; Ort, D. R.; Parry, M. A. J.; Sage, R.; Timm, S. et al.; Walker, B.; Weber, A. P. M.: Manipulating photorespiration to increase plant productivity: recent advances and perspectives for crop improvement. Journal of Experimental Botany 67 (10), pp. 2977 - 2988 (2016)

MPG.PuRe

678.

Journal Article

Gago, J.; Daloso, D. M.; Figueroa, C. M.; Flexas, J.; Fernie, A. R.; Nikoloski, Z.: Relationships of Leaf Net Photosynthesis, Stomatal Conductance, and Mesophyll Conductance to Primary Metabolism: A Multispecies Meta-Analysis Approach. Plant Physiology 171 (1), pp. 265 - 279 (2016)

MPG.PuRe

679.

Journal Article

Keunen, E.; Florez-Sarasa, I. D.; Obata, T.; Jozefczak, M.; Remans, T.; Vangronsveld, J.; Fernie, A. R.; Cuypers, A.: Metabolic responses of Arabidopsis thaliana roots and leaves to sublethal cadmium exposure are differentially influenced by ALTERNATIVE OXIDASE1a. Environmental and Experimental Botany 124, pp. 64 - 78 (2016)

MPG.PuRe

680.

Journal Article

Daloso, D. M.; Williams, T. C. R.; Antunes, W. C.; Pinheiro, D. P.; Mueller, C.; Loureiro, M. E.; Fernie, A. R.: Guard cell-specific upregulation of sucrose synthase 3 reveals that the role of sucrose in stomatal function is primarily energetic. New Phytologist 209 (4), pp. 1470 - 1483 (2016)

MPG.PuRe

681.

Journal Article

Filippou, P.; Antoniou, C.; Obata, T.; Van Der Kelen, K.; Harokopos, V.; Kanetis, L.; Aidinis, V.; Van Breusegem, F.; Fernie, A. R.; Fotopoulos, V.: Kresoxim-methyl primes Medicago truncatula plants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment. Journal of Experimental Botany 67 (5), pp. 1259 - 1274 (2016)

MPG.PuRe

682.

Journal Article

Sanglard, L. M. V. P.; Detmann, K. C.; Martins, S. C. V.; Teixeira, R. A.; Pereira, L. F.; Sanglard, M. L.; Fernie, A. R.; Araujo, W. L.; DaMatta, F. M.: The role of silicon in metabolic acclimation of rice plants challenged with arsenic. Environmental and Experimental Botany 123, pp. 22 - 36 (2016)

MPG.PuRe

683.

Journal Article

Liang, C.; Cheng, S.; Zhang, Y.; Sun, Y.; Fernie, A. R.; Kang, K.; Panagiotou, G.; Lo, C.; Lim, B. L.: Transcriptomic, proteomic and metabolic changes in Arabidopsis thaliana leaves after the onset of illumination. BMC Plant Biology 16, 43 (2016)

MPG.PuRe

684.

Journal Article

Hu, C.; Tohge, T.; Chan, S.-A.; Song, Y.; Rao, J.; Cui, B.; Lin, H.; Wang, L.; Fernie, A. R.; Zhang, D. et al.; Shi, J.: Identification of Conserved and Diverse Metabolic Shifts during Rice Grain Development. Scientific Reports 6, 20942 (2016)

MPG.PuRe

685.

Journal Article

Colinas, M.; Eisenhut, M.; Tohge, T.; Pesquera, M.; Fernie, A. R.; Weber, A. P. M.; Fitzpatrick, T. B.: Balancing of B-6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis. The Plant Cell 28 (2), pp. 439 - 453 (2016)

MPG.PuRe

686.

Journal Article

Michaeli, S.; Galili, G.; Genschik, P.; Fernie, A. R.; Avin-Wittenberg, T.: Autophagy in Plants - What's New on the Menu? Trends in Plant Science 21 (2), pp. 134 - 144 (2016)

MPG.PuRe

687.

Journal Article

Moschen, S.; Bengoa Luoni, S.; Di Rienzo, J. A.; del Pilar Caro, M.; Tohge, T.; Watanabe, M.; Hollmann, J.; Gonzalez, S.; Rivarola, M.; Garcia-Garcia, F. et al.; Dopazo, J.; Esteban Hopp, H.; Hoefgen, R.; Fernie, A. R.; Paniego, N.; Fernandez, P.; Heinz, R. A.: Integrating transcriptomic and metabolomic analysis to understand natural leaf senescence in sunflower. Plant Biotechnology Journal 14 (2), pp. 719 - 734 (2016)

MPG.PuRe

688.

Journal Article

Aarabi, F.; Kusajima, M.; Tohge, T.; Konishi, T.; Gigolashvili, T.; Takamune, M.; Sasazaki, Y.; Watanabe, M.; Nakashita, H.; Fernie, A. R. et al.; Saito, K.; Takahashi, H.; Hubberten, H. M.; Hoefgen, R.; Maruyama-Nakashita, A.: Sulfur deficiency–induced repressor proteins optimize glucosinolate biosynthesis in plants. Science Advances 2 (10), e1601087 (2016)

MPG.PuRe

689.

Journal Article

Antonio, C.; Päpke, C.; Rocha, M.; Diab, H.; Limami, A. M.; Obata, T.; Fernie, A. R.; van Dongen, J.: Regulation of Primary Metabolism in Response to Low Oxygen Availability as Revealed by Carbon and Nitrogen Isotope Redistribution. Plant Physiology 170 (1), pp. 43 - 56 (2016)

MPG.PuRe

690.

Journal Article

Basler, G.; Küken, A.; Fernie, A. R.; Nikoloski, Z.: Photorespiratory Bypasses Lead to Increased Growth in Arabidopsis thaliana: Are Predictions Consistent with Experimental Evidence? Frontiers in Bioengineering and Biotechnology 4, 31 (2016)

MPG.PuRe

691.

Journal Article

Beleggia, R.; Rau, D.; Laido, G.; Platani, C.; Nigro, F.; Fragasso, M.; De Vita, P.; Scossa, F.; Fernie, A. R.; Nikoloski, Z. et al.; Papa, R.: Evolutionary Metabolomics Reveals Domestication-Associated Changes in Tetraploid Wheat Kernels. Molecular Biology and Evolution 33 (7), pp. 1740 - 1753 (2016)

MPG.PuRe

692.

Journal Article

Bustamante, C. A.; Monti, L. L.; Gabilondo, J.; Scossa, F.; Valentini, G.; Budde, C. O.; Lara, M. V.; Fernie, A. R.; Drincovich, M. F.: Differential Metabolic Rearrangements after Cold Storage Are Correlated with Chilling Injury Resistance of Peach Fruits. Frontiers in Plant Science 7, 1478 (2016)

MPG.PuRe

693.

Journal Article

Coluccio Leskow, C.; Kamenetzky, L.; Guadalupe Dominguez, P.; Diaz Zirpolo, J. A.; Obata, T.; Costa, H.; Marti, M.; Taboga, O.; Keurentjes, J.; Sulpice, R. et al.; Ishihara, H.; Stitt, M.; Fernie, A. R.; Carrari, F.: Allelic differences in a vacuolar invertase affect Arabidopsis growth at early plant development. Journal of Experimental Botany 67 (14), pp. 4091 - 4103 (2016)

MPG.PuRe

694.

Journal Article

Czedik-Eysenberg, A.; Arrivault, S.; Lohse, M.A.; Feil, R.; Krohn, N.; Encke, B.; Nunes-Nesi, A.; Fernie, A. R.; Lunn, J. E.; Sulpice, R. et al.; Stitt, M.: The interplay between carbon availability and growth in different zones of the growing maize leaf. Plant Physiology 172 (2), pp. 943 - 967 (2016)

MPG.PuRe

695.

Journal Article

Del-Saz, N. F.; Florez-Sarasa, I. D.; Clemente-Moreno, M. J.; Mhadhbi, H.; Flexas, J.; Fernie, A. R.; Ribas-Carbó, M.: Salinity tolerance is related to cyanide-resistant alternative respiration in Medicago truncatula under sudden severe stress. Plant, Cell and Environment 39 (11), pp. 2361 - 2369 (2016)

MPG.PuRe

696.

Journal Article

Eggert, E.; Obata, T.; Gerstenberger, A.; Gier, K.; Brandt, T.; Fernie, A. R.; Schulze, W. X.; Kühn, C.: A sucrose transporter-interacting protein disulphide isomerase affects redox homeostasis and links sucrose partitioning with abiotic stress tolerance. Plant, Cell and Environment 39 (6), pp. 1366 - 1380 (2016)

MPG.PuRe

697.

Journal Article

Fernie, A. R.: Systems biology: A new CAM era. Nature Plants 2, 16190 (2016)

MPG.PuRe

698.

Journal Article

Florez-Sarasa, I. D.; Noguchi, K.; Araujo, W.; Garcia-Nogales, A.; Fernie, A. R.; Flexas, J.; Ribas-Carbo, M.: Impaired cyclic electron flow around Photosystem I disturbs high-light respiratory metabolism. Plant Physiology 172 (4), pp. 2176 - 2189 (2016)

MPG.PuRe

699.

Journal Article

Florez-Sarasa, I. D.; Ribas-Carbo, M.; Fernandez Del-Saz, N.; Schwahn, K.; Nikoloski, Z.; Fernie, A. R.; Flexas, J.: Unravelling the invivo regulation and metabolic role of the alternative oxidase pathway in C-3 species under photoinhibitory conditions. New Phytologist 212 (1), pp. 66 - 79 (2016)

MPG.PuRe

700.

Journal Article

Galili, G.; Amir, R.; Fernie, A. R.: The Regulation of Essential Amino Acid Synthesis and Accumulation in Plants. Annual Review of Plant Biology, pp. 153 - 178 (2016)

MPG.PuRe