Publications of Alisdair Fernie

Max Planck Institute of Molecular Plant Physiology

Journal Article (1112)

501.

Journal Article

Brog, Y. M.; Osorio, S.; Yichie, Y.; Alseekh, S.; Bensal, E.; Kochevenko, A.; Zamir, D.; Fernie, A. R.: A Solanum neorickii introgression population providing a powerful complement to the extensively characterized Solanum pennellii population. The Plant Journal 97 (2), pp. 391 - 403 (2019)

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502.

Journal Article

Chaves, I. d. S.; Feitosa-Araujo, E.; Florian, A.; Medeiros, D. B.; da Fonseca-Pereira, P.; Charton, L.; Heyneke, E.; Apfata, J. A. C.; Pires V, M.; Mettler-Altmann, T. et al.; Araujo, W. L.; Neuhaus, H. E.; Palmieri, F.; Obata, T.; Weber, A. P. M.; Linka, N.; Fernie, A. R.; Nunes-Nesi, A.: The mitochondrial NAD(+) transporter (NDT1) plays important roles in cellular NAD(+) homeostasis in Arabidopsis thaliana. The Plant Journal 100 (3), pp. 487 - 504 (2019)

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503.

Journal Article

Clemente-Moreno, J. M.; Omranian, N.; Sáez, P.; Figueroa, C. M.; Del-Saz, N.; Elso, M.; Poblete, L.; Orf, I.; Cuadros-Inostroza, A.; Cavieres, L. et al.; Bravo, L.; Fernie, A. R.; Ribas-Carbó, M.; Flexas, J.; Nikoloski, Z.; Brotman, Y.; Gago, J.: Cytochrome respiration pathway and sulphur metabolism sustain stress tolerance to low temperature in the Antarctic species Colobanthus quitensis. New Phytologist 225 (2), pp. 754 - 768 (2019)

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504.

Journal Article

Clemente-Moreno, M.J.; Gago, J.; Díaz-Vivancos, P.; Bernal, A.; Miedes, E.; Bresta, P.; Liakopoulos, G.; Fernie, A. R.; Hernández, J.A.; Flexas, J.: The apoplastic antioxidant system and altered cell wall dynamics influence mesophyll conductance and the rate of photosynthesis. The Plant Journal 99 (6), pp. 1031 - 1046 (2019)

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505.

Journal Article

da Fonseca-Pereira, P.; Daloso, D. M.; Gago, J.; de Oliveira Silva, F.M.; Condori-Apfata, J.A.; Florez-Sarasa, I. D.; Tohge, T.; Reichheld, J.-P.; Nunes-Nesi, A.; Fernie, A. R. et al.; Araújo, W.L.: The Mitochondrial Thioredoxin System Contributes to the Metabolic Responses Under Drought Episodes in Arabidopsis. Plant and Cell Physiology 60 (1), pp. 213 - 229 (2019)

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506.

Journal Article

De Smet, B.; Willems, P.; Fernandez-Fernandez, A. D.; Alseekh, S.; Fernie, A. R.; Messens, J.; Van Breusegem, F.: In vivo detection of protein cysteine sulfenylation in plastids. The Plant Journal 97 (4), pp. 765 - 778 (2019)

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507.

Journal Article

de Souza, L. P.; Alseekh, S.; Naake, T.; Fernie, A. R.: Mass Spectrometry-Based Untargeted Plant Metabolomics. Current Protocols in Plant Biology 4 (4), e20100 (2019)

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508.

Journal Article

Fàbregas, N.; Fernie, A. R.: The metabolic response to drought. Journal of Experimental Botany 70 (4), pp. 1077 - 1085 (2019)

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509.

Journal Article

Fang, C.; Fernie, A. R.; Luo, J.: Exploring the Diversity of Plant Metabolism. Trends in Plant Science 24 (1), pp. 83 - 98 (2019)

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510.

Journal Article

Fernie, A. R.: Evolution: An Early Role for Flavonoids in Defense against Oomycete Infection. Current Biology 29 (14), pp. R688 - R690 (2019)

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511.

Journal Article

Fernie, A. R.; Aharoni, A.: Pan-Genomic Illumination of Tomato Identifies Novel Gene–Trait Interactions. Trends in Plant Science 24 (10), pp. 882 - 884 (2019)

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512.

Journal Article

Fernie, A. R.; Gutierrez-Marcos, J.: From genome to phenome: genome-wide association studies and other approaches that bridge the genotype to phenotpe gap. Plant Journal 97 (1), pp. 5 - 7 (2019)

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513.

Journal Article

Fernie, A. R.; Yan, J.: De Novo Domestication: An Alternative Route toward New Crops for the Future. Molecular Plant 12 (5), pp. 615 - 631 (2019)

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514.

Journal Article

Ferrari, C.; Proost, S.; Janowski, M.; Becker, J.; Nikoloski, Z.; Bhattacharya, D.; Price, D.; Tohge, T.; Bar-Even, A.; Fernie, A. R. et al.; Stitt, M.; Mutwil, M.: Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida. Nature Communications 10, 737 (2019)

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515.

Journal Article

Florez-Sarasa, I. D.; Obata, T.; Del-Saz, N. F.; Reichheld, J.-P.; Meyer, E. H.; Rodriguez-Concepcion, M.; Ribas-Carbo, M.; Fernie, A. R.: The Lack of Mitochondrial Thioredoxin TRXo1 Affects In Vivo Alternative Oxidase Activity and Carbon Metabolism under Different Light Conditions. Plant and Cell Physiology 60 (11), pp. 2369 - 2381 (2019)

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516.

Journal Article

Fort, A.; Lebrault, M.; Allaire, M.; Esteves-Ferreira, A. A.; McHale, M.; Lopez, F.; Farinas-Franco, J. M.; Alseekh, S.; Fernie, A. R.; Sulpice, R.: Extensive Variations in Diurnal Growth Patterns and Metabolism Among Ulva spp. Strains. Plant Physiology 180 (1), pp. 109 - 123 (2019)

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517.

Journal Article

Heng, Z.; Sheng, O.; Huang, W.; Zhang, S.; Fernie, A. R.; Motorykin, I.; Kong, Q.; Yi, G.; Yan, S.: Integrated proteomic and metabolomic analysis suggests high rates of glycolysis are likely required to support high carotenoid accumulation in banana pulp. Food Chemistry 297, 125016 (2019)

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518.

Journal Article

Hou, L.-Y.; Ehrlich, M.; Thormählen, I.; Lehmann, M.; Krahnert, I.; Obata, T.; Cejudo, F.J.; Fernie, A. R.; Geigenberger, P.: NTRC Plays a Crucial Role in Starch Metabolism, Redox Balance, and Tomato Fruit Growth. Plant Physiology 181 (3), pp. 976 - 992 (2019)

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519.

Journal Article

Jorge, T.F.; Tohge, T.; Wendenburg, R.; Ramalho, J.C.; Lidon, F.C.; Ribeiro-Barros, A.I.; Fernie, A. R.; António, C.: Salt-stress secondary metabolite signatures involved in the ability of Casuarina glauca to mitigate oxidative stress. Environmental and Experimental Botany 166, 103808 (2019)

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520.

Journal Article

Kudo, M.; Kidokoro, S.; Yoshida, T.; Mizoi, J.; Kojima, M.; Takebayashi, Y.; Sakakibara, H.; Fernie, A. R.; Shinozaki, K.; Yamaguchi-Shinozaki, K.: A gene-stacking approach to overcome the trade-off between drought stress tolerance and growth in Arabidopsis. The Plant Journal 97 (2), pp. 240 - 256 (2019)

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521.

Journal Article

Lazare, S.; Bechar, D.; Fernie, A. R.; Brotman, Y.; Zaccai, M.: The proof is in the bulb: glycerol influences key stages of lily development. The Plant Journal 97 (2), pp. 321 - 340 (2019)

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522.

Journal Article

Li, Y.; Lu, Y.; Li, L.; Chu, Z.; Zhang, H.; Li, H.; Fernie, A. R.; Ouyang, B.: Impairment of hormone pathways results in a general disturbance of fruit primary metabolism in tomato. Food Chemistry 274, pp. 170 - 179 (2019)

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523.

Journal Article

Lima, V. F.; Anjos, L. d.; Medeiros, D.B.; Cândido-Sobrinho, S. A.; de Souza, L. P.; Gago, J.; Fernie, A. R.; Daloso, D. M.: The sucrose-to-malate ratio correlates with the faster CO2 and light stomatal responses of angiosperms compared to ferns. New Phytologist 223 (4), pp. 1873 - 1887 (2019)

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524.

Journal Article

Mangel, N.; Fudge, J. B.; Li, K.-T.; Wu, T.-Y.; Tohge, T.; Fernie, A. R.; Szurek, B.; Fitzpatrick, T. B.; Gruissem, W.; Vanderschuren, H.: Enhancement of vitamin B-6 levels in rice expressing Arabidopsis vitamin B-6 biosynthesis de novo genes. The Plant Journal 99 (6), pp. 1047 - 1065 (2019)

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525.

Journal Article

Martins, A. O.; Omena-Garcia, R. P.; Oliveira, F. S.; Silva, W. A.; Hajirezaei, M.-R.; Vallarino, J. G.; Ribeiro, D. M.; Fernie, A. R.; Nunes-Nesi, A.; Araujo, W. L.: Differential root and shoot responses in the metabolism of tomato plants exhibiting reduced levels of gibberellin. Environmental and Experimental Botany 157, pp. 331 - 343 (2019)

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526.

Journal Article

Medeiros, D.B.; Arrivault, S.; Alpers, J.; Fernie, A. R.; Aarabi, F.: Non-aqueous Fractionation (NAF) for Metabolite Analysis in Subcellular Compartments of Arabidopsis Leaf Tissues. Bio-protocol 9 (20), UNSP e3399 (2019)

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527.

Journal Article

Medeiros, D.B.; da Luz, L.M.; de Oliveira, H.O.; Araújo, W.L.; Daloso, D.M.; Fernie, A. R.: Metabolomics for understanding stomatal movements. Theoretical and Experimental Plant Physiology 31 (1), pp. 91 - 102 (2019)

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528.

Journal Article

Moschen, S.; Marino, J.; Nicosia, S.; Higgins, J.; Alseekh, S.; Astigueta, F.; Bengoa Luoni, S.; Rivarola, M.; Fernie, A. R.; Blanchet, N. et al.; Langlade, N.B.; Paniego, N.; Fernández, P.; Heinz, R.A.: Exploring gene networks in two sunflower lines with contrasting leaf senescence phenotype using a system biology approach. BMC Plant Biology 19 (1), p. 446 (2019)

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529.

Journal Article

Mur, L.A.J.; Kumari, A.; Brotman, Y.; Zeier, J.; Mandon, J.; Cristescu, S.M.; Harren, F.; Kaiser, W.M.; Fernie, A. R.; Gupta, K.J.: Nitrite and nitric oxide are important in the adjustment of primary metabolism during the hypersensitive response in tobacco. Journal of Experimental Botany 70 (17), pp. 4571 - 4582 (2019)

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530.

Journal Article

Murik, O.; Tirichine, L.; Prihoda, J.; Thomas, Y.; Araujo, W. L.; Allen, A. E.; Fernie, A. R.; Bowler, C.: Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom. New Phytologist 221 (3), pp. 1303 - 1316 (2019)

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531.

Journal Article

Naake, T.; Fernie, A. R.: MetNet: Metabolite Network Prediction from High-Resolution Mass Spectrometry Data in R Aiding Metabolite Annotation. Analytical Chemistry 91 (3), pp. 1768 - 1772 (2019)

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532.

Journal Article

Nunes-Nesi, A.; Alseekh, S.; de Silva, O.; Magnum, F.; Omranian, N.; Lichtenstein, G.; Mirnezhad, M.; González, R. R. R.; Garcia, J. S. y.; Conte, M. et al.; Leiss, K. A.; Klinkhamer, P. G. L.; Nikoloski, Z.; Carrari, F.; Fernie, A. R.: Identification and characterization of metabolite quantitative trait loci in tomato leaves and comparison with those reported for fruits and seeds. Metabolomics 15 (4), 46 (2019)

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533.

Journal Article

Omena-Garcia, R. P.; Martins, A. O.; Medeiros, D.B.; Vallarino, J. G.; Ribeiro, D. M.; Fernie, A. R.; Araújo, W. L.; Nunes-Nesi, A.: Growth and metabolic adjustments in response to gibberellin deficiency in drought stressed tomato plants. Environmental and Experimental Botany 159, pp. 95 - 107 (2019)

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534.

Journal Article

Pandey, P. K.; Yu, J.; Omranian, N.; Alseekh, S.; Vaid, N.; Fernie, A. R.; Nikoloski, Z.; Laitinen, R.: Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations. Plant Direct 3 (11), e00186 (2019)

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535.

Journal Article

Patzke, K.; Prananingrum, P.; Klemens, P. A. W.; Trentmann, O.; Rodrigues, C. M.; Keller, I.; Fernie, A. R.; Geigenberger, P.; Boelter, B.; Lehmann, M. et al.; Schmitz-Esser, S.; Pommerrenig, B.; Haferkamp, I.; Neuhaus, H. E.: The Plastidic Sugar Transporter pSuT Influences Flowering and Affects Cold Responses. Plant Physiology 179 (2), pp. 569 - 587 (2019)

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536.

Journal Article

Reinholdt, O.; Schwab, S.; Zhang, Y.; Reichheld, J.-P.; Fernie, A. R.; Hagemann, M.; Timm, S.: Redox-regulation of photorespiration through mitochondrial thioredoxin o1. Plant Physiology 181 (2), pp. 442 - 457 (2019)

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537.

Journal Article

Rosado-Souza, L.; David, L.C.; Drapal, M.; Fraser, P.D.; Hofmann, J.; Klemens, P.A.W.; Ludewig, F.; Neuhaus, H.E.; Obata, T.; Perez-Fons, L. et al.; Schlereth, A.; Sonnewald, U.; Stitt, M.; Zeeman, S.C.; Zierer, W.; Fernie, A. R.: Cassava Metabolomics and Starch Quality. Current protocols in plant biology 4 (4), e20102 (2019)

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538.

Journal Article

Rosado-Souza, L.; Proost, S.; Moulin, M.; Bergmann, S.; Bocobza, S. E.; Aharoni, A.; Fitzpatrick, T. B.; Mutwil, M.; Fernie, A. R.; Obata, T.: Appropriate Thiamin Pyrophosphate Levels Are Required for Acclimation to Changes in Photoperiod. Plant Physiology 180 (1), pp. 185 - 197 (2019)

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539.

Journal Article

Sánchez-Guerrero, A.; Fernández del-Saz, N.; Florez-Sarasa, I. D.; Ribas-Carbó, M.; Fernie, A. R.; Jiménez, A.; Sevilla, F.: Coordinated responses of mitochondrial antioxidative enzymes, respiratory pathways and metabolism in Arabidopsis thaliana thioredoxin trxo1 mutants under salinity. Environmental and Experimental Botany 162, pp. 212 - 222 (2019)

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540.

Journal Article

Scossa, F.; Roda, F.; Tohge, T.; Georgiev, M.I.; Fernie, A. R.: The Hot and the Colorful: Understanding the Metabolism, Genetics and Evolution of Consumer Preferred Metabolic Traits in Pepper and Related Species. Critical Reviews in Plant Sciences 38 (5-6), pp. 339 - 381 (2019)

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541.

Journal Article

Shapiguzov, A.; Vainonen, J.P.; Hunter, K.; Tossavainen, H.; Tiwari, A.; Järvi, S.; Hellman, M.; Aarabi, F.; Alseekh, S.; Wybouw, B. et al.; Van Der Kelen, K.; Nikkanen, L.; Krasensky-Wrzaczek, J.; Sipari, N.; Keinänen, M.; Tyystjärvi, E.; Rintamäki, E.; De Rybel, B.; Salojärvi, J.; Van Breusegem, F.; Fernie, A. R.; Brosché, M.; Permi, P.; Aro, E.-M.; Wrzaczek, M.; Kangasjärvi, J.; Kangasjärvi, J.: Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors. eLife 8, 43284 (2019)

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542.

Journal Article

Smith, S. R.; Dupont, C. L.; McCarthy, J. K.; Broddrick, J. T.; Obornik, M.; Horak, A.; Fussy, Z.; Cihlar, J.; Kleessen, S.; Zheng, H. et al.; McCrow, J. P.; Hixson, K. K.; Araujo, W. L.; Nunes-Nesi, A.; Fernie, A. R.; Nikoloski, Z.; Palsson, B. O.; Allen, A. E.: Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom. Nature Communications 10, 4552 (2019)

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543.

Journal Article

Souza, P. V. L.; Lima-Melo, Y.; Carvalho, F. E.; Reichheld, J.-P.; Fernie, A. R.; Silveira, J. A. G.; Daloso, D. M.: Function and Compensatory Mechanisms Among the Components of the Chloroplastic Redox Network. Critical Reviews in Plant Sciences 38 (1), pp. 1 - 28 (2019)

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544.

Journal Article

Vallarino, J. G.; Pott, D. M.; Cruz-Rus, E.; Miranda, L.; Medina-Minguez, J. J.; Valpuesta, V.; Fernie, A. R.; Sánchez-Sevilla, J. F.; Osorio, S.; Amaya, I.: Identification of quantitative trait loci and candidate genes for primary metabolite content in strawberry fruit. Horticulture Research 6 (1), 4 (2019)

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545.

Journal Article

Wang, H.; Yan, S.; Xin, H.; Huang, W.; Zhang, H.; Teng, S.; Yu, Y.-C.; Fernie, A. R.; Lu, X.; Li, P. et al.; Li, S.; Zhang, C.; Ruan, Y.-L.; Chen, L.-Q.; Lang, Z.: A Subsidiary Cell-Localized Glucose Transporter Promotes Stomatal Conductance and Photosynthesis. Plant Cell 31 (6), pp. 1328 - 1343 (2019)

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546.

Journal Article

Wang, S.; Alseekh, S.; Fernie, A. R.; Luo, J.: The Structure and Function of Major Plant Metabolite Modifications. Molecular Plant 12 (7), pp. 899 - 919 (2019)

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547.

Journal Article

Wany, A.; Gupta, A. K.; Kumari, A.; Mishra, S.; Singh, N.; Pandey, S.; Vanvari, R.; Igamberdiev, A. U.; Fernie, A. R.; Gupta, K. J.: Nitrate nutrition influences multiple factors in order to increase energy efficiency under hypoxia in Arabidopsis. Annals of Botany 123 (4), pp. 691 - 705 (2019)

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548.

Journal Article

Yoshida, T.; Christmann, A.; Yamaguchi-Shinozaki, K.; Grill, E.; Fernie, A. R.: Revisiting the Basal Role of ABA - Roles Outside of Stress. Trends in Plant Science 24 (7), pp. 625 - 635 (2019)

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549.

Journal Article

Yoshida, T.; dos Anjos, L.; Medeiros, D.B.; Araujo, W. L.; Fernie, A. R.; Daloso, D. M.: Insights into ABA-mediated regulation of guard cell primary metabolism revealed by systems biology approaches. Progress in Biophysics & Molecular Biology 146, pp. 37 - 49 (2019)

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550.

Journal Article

Yoshida, T.; Obata, T.; Feil, R.; Lunn, J. E.; Fujita, Y.; Yamaguchi-Shinozaki, K.; Fernie, A. R.: The Role of Abscisic Acid Signaling in Maintaining the Metabolic Balance Required for Arabidopsis Growth under Nonstress Conditions. The Plant Cell 31 (1), pp. 84 - 105 (2019)

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