Publications of Alisdair Fernie

51.

Journal Article

von Bismarck, T.; Wendering, P.; de Souza, L. P.; Ruß, J.; Strandberg, L.; Heyneke, E.; Walker, B. J.; Schöttler, M. A.; Fernie, A. R.; Nikoloski, Z. et al.; Armbruster, U.: Growth in fluctuating light buffers plants against photorespiratory perturbations. Nature Communications 14 (1), 7052 (2023)

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52.

Journal Article

Zemach, I.; Alseekh, S.; Tadmor-Levi, R.; Fisher, J.; Torgeman, S.; Trigerman, S.; Nauen, J.; Hayut, S. F.; Mann, V.; Rochsar, E. et al.; Finkers, R.; Wendenburg, R.; Osorio, S.; Bergmann, S.; Lunn, J. E.; Semel, Y.; Hirschberg, J.; Fernie, A. R.; Zamir, D.: Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity. The Plant Journal 116 (4), pp. 1136 - 1151 (2023)

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53.

Journal Article

Zhang, Y.; Martinez-Jaime, S.; Bulut, M.; Graf, A.; Fernie, A. R.: The conditional mitochondrial protein complexome in Arabidopsis thaliana root and shoot. Plant Communications 4 (5), 100635 (2023)

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54.

Journal Article

Fernie, A. R.; Zhang, Y.: Observations and implication of thermal tolerance in the Arabidopsis proteome. Cell Systems 14 (10), pp. 819 - 821 (2023)

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55.

Journal Article

Lamm, C. E.; Rabbi, I. Y.; Medeiros, D.B.; Rosado-Souza, L.; Pommerrenig, B.; Dahmani, I.; Rüscher, D.; Hofmann, J.; van Doorn; M., A. et al.; Schlereth, A.; Neuhaus, H. E.; Fernie, A. R.; Sonnewald, U.; Zierer, W.: Efficient sugar utilization and transition from oxidative to substrate-level phosphorylation in high starch storage roots of African cassava genotypes. The Plant Journal 116 (1), pp. 38 - 57 (2023)

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56.

Journal Article

Nicolas, P.; Pattison, R. J.; Zheng, Y.; Lapidot-Cohen, T.; Brotman, Y.; Osorio, S.; Fernie, A. R.; Fei, Z.; Catalá, C.: Starch deficiency in tomato causes transcriptional reprogramming that modulates fruit development, metabolism, and stress responses. Journal of Experimental Botany 74 (20), pp. 6331 - 6348 (2023)

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57.

Journal Article

Pereira-Lima, Í.A.; Batista-Silva, W.; Siqueira, J.A.; Silva, M.F.; Medeiros, D.B.; Cavalcanti, J.H.; Gonçalves, J.F.D.C.; Ribeiro, D.M.; Fernie, A. R.; Nunes-Nesi, A. et al.; Araújo, W.L.: Differential Aluminum tolerance in Arabidopsis thaliana ecotypes is seemingly related to metabolite changes. Environmental and Experimental Botany 214, 105472 (2023)

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58.

Journal Article

Segarra-Medina, C.; Alseekh, S.; Fernie, A. R.; Rambla, J. L.; Pérez-Clemente, R. M.; Gómez-Cádenas, A.; Zandalinas, S. I.: Abscisic acid promotes plant acclimation to the combination of salinity and high light stress. Plant Physiology and Biochemistry 203, 108008 (2023)

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59.

Journal Article

Shan, N.; Zhang, Y.; Guo, Y.; Zhang, W.; Nie, J.; Fernie, A. R.; Sui, X.: Cucumber malate decarboxylase, CsNADP-ME2, functions in the balance of carbon and amino acid metabolism in fruit. Horticulture Research 10 (12), uhad216 (2023)

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60.

Journal Article

Siqueira, J. A.; Zhang, Y.; Nunes-Nesi, A.; Fernie, A. R.; Araújo, W. L.: Beyond photorespiration: the significance of glycine and serine in leaf metabolism. Trends in Plant Science 28 (10), pp. 1092 - 1094 (2023)

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61.

Journal Article

Steensma, P.; Eisenhut, M.; Colinas, M.; Rosado-Souza, L.; Fernie, A. R.; Weber, A. P. M.; Fitzpatrick, T. B.: PYRIDOX(AM)INE 5'-PHOSPHATE OXIDASE3 of Arabidopsis thaliana maintains carbon/nitrogen balance in distinct environmental conditions. Plant Physiology 193 (2), kiad411, pp. 1433 - 1455 (2023)

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62.

Journal Article

Wan, H.; Zhang, Y.; Wu, L.; Zhou, G.; Pan, L.; Fernie, A. R.; Ruan, Y.-L.: Evolution of cytosolic and organellar invertases empowered the colonization and thriving of land plants. Plant Physiology 193 (2), pp. 1227 - 1243 (2023)

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63.

Journal Article

Younis, I.Y.; Mohsen, E.; Ibrahim, R.M.; Fernie, A. R.; Alseekh, S.; Salem, M.A.: Non-targeted metabolomics and chemometrics for saffron (Crocus sativus L.) authentication and adulteration detection in relation to its anticholinesterase activity. Food Chemistry Advances 2, 100217 (2023)

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64.

Journal Article

Aarabi, F.; Fernie, A. R.: Elucidating the role of ascorbate in light signaling. Trends in Plant Science 28 (9), pp. 978 - 980 (2023)

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65.

Journal Article

Aarabi, F.; Fernie, A. R.: SPOTLIGHT: Ascorbate triggers the switch between cell division and cell differentiation in the Arabidopsis tapetum. Journal of Plant Physiology 288, 154058 (2023)

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66.

Journal Article

Li, R.; Tang, F.; Che, Y.; Fernie, A. R.; Zhou, Q.; Ding, Z.; Yao, Y.; Liu, J.; Wang, Y.; Hu, X. et al.; Guo, J.: MeGLYI-13, a Glyoxalase I Gene in Cassava, Enhances the Tolerance of Yeast and Arabidopsis to Zinc and Copper Stresses. Plants 12 (19), 3375 (2023)

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67.

Journal Article

Solis-Miranda, J.; Chodasiewicz, M.; Skirycz, A.; Fernie, A. R.; Moschou, P.; Bozhkov, P.; Gutierrez-Beltran, E.: Stress-related biomolecular condensates in plants. Plant Cell 35 (9), pp. 3187 - 3204 (2023)

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68.

Journal Article

Thirumalaikumar, V.P.; Fernie, A. R.; Skirycz, A.: Untargeted Proteomics and Metabolomics Analysis of Plant Organ Development. Methods in molecular biology (Clifton, N.J.) 2698, pp. 75 - 85 (2023)

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69.

Journal Article

Zayed, A.; Farag, M. A.; Mehring, A.; Salem, M. A.; Ibrahim, R. M.; Alseekh, S.; Fernie, A. R.; Ulber, R.: Methyl jasmonate elicitation effect on the metabolic profile of cambial meristematic cells culture derived from sweet basil (Ocimum basilicum L.) in relation to antioxidant activity: Untargeted metabolomics study in a time-based approach. Phytochemistry 213, 113777 (2023)

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70.

Journal Article

Zhou, Q.; Li, R.; Fernie, A. R.; Che, Y.; Ding, Z.; Yao, Y.; Liu, J.; Wang, Y.; Hu, X.; Guo, J.: Integrated Analysis of Morphological, Physiological, Anatomical and Molecular Responses of Cassava Seedlings to Different Light Qualities. International Journal of Molecular Sciences 24 (18), 14224 (2023)

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71.

Journal Article

Alseekh, S.; Karakas, E.; Zhu, F.; Wijesingha Ahchige, M.; Fernie, A. R.: Plant biochemical genetics in the multiomics era. Journal of Experimental Botany 74 (15), pp. 4293 - 4307 (2023)

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72.

Journal Article

Correa Cordoba, S.; Tong, H.; Burgos, A.; Zhu, F.; Alseekh, S.; Fernie, A. R.; Nikoloski, Z.: Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism. Nature Communications 14 (1), 4897 (2023)

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73.

Journal Article

de Souza, L. P.; Bitocchi, E.; Papa, R.; Tohge, T.; Fernie, A. R.: Decreased metabolic diversity in common beans associated with domestication revealed by untargeted metabolomics, information theory, and molecular networking. The Plant Journal 115 (4), pp. 1021 - 1036 (2023)

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74.

Journal Article

Garcia, F. H. S.; Domingues Júnior, A.P.; Lima Nogueira, M.; de Paula, S.; Ferreira, J.; Lavres, J.; Martins, S. J.; Fernie, A. R.; Kluge, R. A.: Impact of Leifsonia xyli subsp. xyli titer on nutritional status, and metabolism of sugar cane. Plant and Soil 493, pp. 341 - 354 (2023)

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75.

Journal Article

He, Y.; Zhang, K.; Li, S.; Lu, X.; Zhao, H.; Guan, C.; Huang, X.; Shi, Y.; Kang, Z.; Fan, Y. et al.; Li, W.; Chen, C.; Li, G.; Long, O.; Chen, Y.; Hu, M.; Cheng, J.; Xu, B.; Chapman, M. A.; Georgiev, M. I.; Fernie, A. R.; Zhou, M.: Multi-omics analysis reveals the molecular mechanisms underlying virulence in Rhizoctonia and jasmonic acid–mediated resistance in Tartary buckwheat (Fagopyrum tataricum). The Plant Cell 35 (8), pp. 2773 - 2798 (2023)

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76.

Journal Article

Jing, Y.; Watanabe, M.; Aarabi, F.; Fernie, A. R.; Borghi, M.; Tohge, T.: Cross-Species Metabolomic Analyses In The Brassicaceae Reveals Common Responses To Ultraviolet-B Exposure. Plant and Cell Physiology 64 (12), pp. 1523 - 1533 (2023)

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77.

Journal Article

Lima, V.F.; Freire, F.B.S.; Cândido-Sobrinho, S.A.; Porto, N.P.; Medeiros, D.B.; Erban, A.; Kopka, J.; Schwarzländer, M.; Fernie, A. R.; Daloso, D.M.: Unveiling the dark side of guard cell metabolism. Plant Physiology and Biochemistry 201, 107862 (2023)

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78.

Journal Article

Segarra-Medina, C.; Pascual, L. S.; Alseekh, S.; Fernie, A. R.; Rambla, J. L.; Gómez-Cadenas, A.; Zandalinas, S. I.: Comparison of metabolomic reconfiguration between Columbia and Landsberg ecotypes subjected to the combination of high salinity and increased irradiance. BMC Plant Biology 23, 406 (2023)

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79.

Journal Article

Caldana, C.; Carrari, F.; Fernie, A. R.; Sampathkumar, A.: How metabolism and development are intertwined in space and time. The Plant Journal 116 (2), pp. 347 - 359 (2023)

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80.

Journal Article

Chialva, M.; Patono, D.; de Souza, L. P.; Novero, M.; Vercellino, S.; Maghrebi, M.; Morgante, M.; Lovisolo, C.; Vigani, G.; Fernie, A. R. et al.; Fiorilli, V.; Lanfranco, L.; Bonfante, P.: The mycorrhizal root-shoot axis elicits Coffea arabica growth under low phosphate conditions. New Phytologist 239 (1), pp. 271 - 285 (2023)

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81.

Journal Article

Chmielewski, M. W.; Naya, S.; Borghi, M.; Cortese, J.; Fernie, A. R.; Swartz, M. T.; Zografou, K.; Sewall, B. J.; Spigler, R. B.: Phenology and foraging bias contribute to sex-specific foraging patterns in the rare declining butterfly Argynnis idalia idalia. Ecology and Evolution 13 (7), e10287 (2023)

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82.

Journal Article

Chmielewski, M.; Naya, S.; Borghi, M.; Cortese, J.; Fernie, A. R.; Swartz, M.; Zografou, K.; Sewall, B.; Spigler, R.: Phenology and foraging bias contribute to sex-specific foraging patterns in the rare declining butterfly Argynnis idalia idalia. Ecology and Evolution 13 (7), e10287 (2023)

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83.

Journal Article

Fernie, A. R.; Alseekh, S.: Phylogenomic discovery of deleterious mutants completes the potato breeding revolution. Molecular Plant 16 (7), pp. 1103 - 1105 (2023)

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84.

Journal Article

Salem, M. A.; Aborehab, N. M.; Abdelhafez, M. M.; Ismail, S. H.; Maurice, N. W.; Azzam, M. A.; Alseekh, S.; Fernie, A. R.; Salama, M. M.; Ezzat, S. M.: Anti-Obesity Effect of a Tea Mixture Nano-Formulation on Rats Occurs via the Upregulation of AMP-Activated Protein Kinase/Sirtuin-1/Glucose Transporter Type 4 and Peroxisome Proliferator-Activated Receptor Gamma Pathways. Metabolites 13 (7), 871 (2023)

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85.

Journal Article

Wang, S.; Li, R.; Zhou, Y.; Fernie, A. R.; Ding, Z.; Zhou, Q.; Che, Y.; Yao, Y.; Liu, J.; Wang, Y. et al.; Hu, X.; Guo, J.: Integrated Characterization of Cassava (Manihot esculenta) Pectin Methylesterase (MePME) Genes to Filter Candidate Gene Responses to Multiple Abiotic Stresses. Plants 12 (13), 2529 (2023)

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86.

Journal Article

Zhang, Y.; Fernie, A. R.: Leveraging glycoside-targeted metabolomics to gain insight into biological function. Trends in Plant Science 28 (7), pp. 737 - 739 (2023)

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87.

Journal Article

Aarabi, F.; Salem, M. A.; Arrivault, S.; Bulut, M.; Schöttler, M. A.; Giavalisco, P.; Fernie, A. R.; Hoefgen, R.: The regulation of sulfolipids under sulfur starvation. Plant Molecular Biology 112, pp. 195 - 198 (2023)

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88.

Journal Article

Alseekh, S.; Fernie, A. R.: Expanding our coverage: Strategies to detect a greater range of metabolites. Current Opinion in Plant Biology 73, 102335 (2023)

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89.

Journal Article

Cerqueira, J. V. A.; de Andrade; T., M.; Rafael, D. D.; Zhu, F.; Martins, S. V. C.; Nunes-Nesi, A.; Benedito, V.; Fernie, A. R.; Zsögön, A.: Anthocyanins and reactive oxygen species: a team of rivals regulating plant development? Plant Molecular Biology 112, pp. 213 - 223 (2023)

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90.

Journal Article

Julca, I.; Mutwil-Anderwald, D.; Manoj, V.; Khan, Z.; Lai, S. K.; Yang, L. K.; Beh, I. T.; Dziekan, J.; Lim, Y. P.; Lim, S. K. et al.; Low, Y. W.; Lam, Y. I.; Tjia, S.; Mu, Y.; Tan, Q. W.; Nuc, P.; Choo, L. M.; Khew, G.; Shining, L.; Kam, A.; Tam, J. P.; Bozdech, Z.; Schmidt, M.; Usadel, B.; Kanagasundaram, Y.; Alseekh, S.; Fernie, A. R.; Li, H. Y.; Mutwil, M.: Genomic, transcriptomic, and metabolomic analysis of Oldenlandia corymbosa reveals the biosynthesis and mode of action of anti-cancer metabolites. Journal of Integrative Plant Biology 65 (6), pp. 1442 - 1466 (2023)

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91.

Journal Article

Luzarowska, U.; Ruß, A.-K.; Joubès, J.; Batsale, M.; Szymański, J.; Thirumalaikumar, V. P.; Luzarowski, M.; Wu, S.; Zhu, F.; Endres, N. et al.; Khedhayir, S.; Schumacher, J.; Jasinska, W.; Xu, K.; Cordoba, S. M. C.; Weil, S.; Skirycz, A.; Fernie, A. R.; Li-Beisson, Y.; Fusari, C. M.; Brotman, Y.: Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana. The Plant Cell 35 (6), pp. 1984 - 2005 (2023)

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92.

Journal Article

Souza, P. V. L.; Hou, L.-Y.; Sun, H.; Poeker, L.; Lehman, M.; Bahadar, H.; Domingues-Junior, A. P.; Dard, A.; Bariat, L.; Reichheld, J.-P. et al.; Silveira, J. A. G.; Fernie, A. R.; Timm, S.; Geigenberger, P.; Daloso, D. M.: Plant NADPH-dependent thioredoxin reductases are crucial for the metabolism of sink leaves and plant acclimation to elevated CO2. Plant, Cell and Environment 46, pp. 2337 - 2357 (2023)

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93.

Journal Article

Valifard, M.; Fernie, A. R.; Kitashova, A.; Nägele, T.; Schröder, R.; Meinert, M.; Pommerrenig, B.; Mehner-Breitfeld, D.; Witte, C.-P.; Brüser, T. et al.; Keller, I.; Neuhaus, H. E.: The novel chloroplast glucose transporter pGlcT2 affects adaptation to extended light periods. The Journal of Biological Chemistry 299 (6), 104741 (2023)

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94.

Journal Article

Zhang, Q.; Shi, Y.; Hu, H.; Shi, Y.; Tang, D.; Ruan, J.; Fernie, A. R.; Liu, M.-Y.: Magnesium promotes tea plant growth via enhanced glutamine synthetase-mediated nitrogen assimilation. Plant Physiology 192 (2), pp. 1321 - 1337 (2023)

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95.

Journal Article

Jia, Z.-C.; Das, D.; Zhang, Y.; Fernie, A. R.; Liu, Y.-G.; Chen, M.; Zhang, J.: Plant serine/arginine-rich proteins: versatile players in RNA processing. Planta 257 (6), 109 (2023)

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96.

Journal Article

López, C. M.; Alseekh, S.; Torralbo, F.; Martinez Rivas, F.J.; Fernie, A. R.; Amil-Ruiz, F.; Alamillo, J. M.: Transcriptomic and metabolomic analysis reveals that symbiotic nitrogen fixation enhances drought resistance in common bean. Journal of Experimental Botany 74 (10), pp. 3203 - 3219 (2023)

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97.

Journal Article

Martinez Rivas, F.J.; Blanco-Portales, R.; Pérez-Serratosa, M.; Ric-Varas, P.; Sánchez, V. G.; Puche, L. M.; Moyano, L.; Mercado, J. Á.; Alseekh, S.; Caballero, J. L. et al.; Fernie, A. R.; Muñoz-Blanco, J.; Molina-Hidalgo, F. J.: FaMYB123 interacts with FabHLH3 to regulate the late steps of anthocyanin and flavonol accumulation during ripening. The Plant Journal 114 (3), pp. 683 - 698 (2023)

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98.

Journal Article

Moghe, G.; Kruse, L. H.; Petersen, M.; Scossa, F.; Fernie, A. R.; Gaquerel, E.; D'Auria, J. C.: BAHD Company: The Ever-Expanding Roles of the BAHD Acyltransferase Gene Family in Plants. Annual Review of Plant Biology 74, pp. 165 - 194 (2023)

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99.

Journal Article

Wijesingha Ahchige, M.; Fernie, A. R.; Alseekh, S.: PANTOTHENATE KINASE4, LOSS OF GDU2, and TRANSPOSON PROTEIN1 affect the canalization of tomato fruit metabolism. Plant Physiology 192 (1), pp. 442 - 468 (2023)

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100.

Journal Article

Zhan, C.; Lei, L.; Guo, H.; Zhou, S.; Xu, C.; Liu, Z.; Wu, Z.; Deng, Y.; Miao, Y.; Han, Y. et al.; Zhang, M.; Li, H.; Huang, S.; Yang, C.; Zhang, F.; Li, Y.; Liu, L.; Liu, X.; Abbas, H.M.K.; Fernie, A. R.; Yuan, M.; Luo, J.: Disease resistance conferred by components of essential chrysanthemum oil and the epigenetic regulation of OsTPS1. Science China Life Sciences 66, pp. 1108 - 1118 (2023)

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Journal Article (1030)