Max Planck Institute of Molecular Plant Physiology

Publications of Alisdair Fernie

Journal Article (1043)

1.

Journal Article

Younis, I.Y.; Mohsen, E.; Ibrahim, R.M.; Fernie, A. R.; Alseekh, S.; Salem, M.A.: Non-targeted metabolomics and chemometrics for saffron (Crocus sativus L.) authentication and adulteration detection in relation to its anticholinesterase activity. Food Chemistry Advances 2, 100217 (2023)

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2.

Journal Article

Alseekh, S.; Fernie, A. R.: Expanding our coverage: Strategies to detect a greater range of metabolites. Current Opinion in Plant Biology 73, 102335 (2023)

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3.

Journal Article

Jia, Z.-C.; Das, D.; Zhang, Y.; Fernie, A. R.; Liu, Y.-G.; Chen, M.; Zhang, J.: Plant serine/arginine-rich proteins: versatile players in RNA processing. Planta 257 (6), 109 (2023)

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4.

Journal Article

Martinez Rivas, F.J.; Blanco-Portales, R.; Pérez-Serratosa, M.; Ric-Varas, P.; Sánchez, V. G.; Puche, L. M.; Moyano, L.; Mercado, J. Á.; Alseekh, S.; Caballero, J. L. et al.; Fernie, A. R.; Muñoz-Blanco, J.; Molina-Hidalgo, F. J.: FaMYB123 interacts with FabHLH3 to regulate the late steps of anthocyanin and flavonol accumulation during ripening. The Plant Journal 114 (3), pp. 683 - 698 (2023)

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5.

Journal Article

Moghe, G.; Kruse, L. H.; Petersen, M.; Scossa, F.; Fernie, A. R.; Gaquerel, E.; D'Auria, J. C.: BAHD Company: The Ever-Expanding Roles of the BAHD Acyltransferase Gene Family in Plants. Annual Review of Plant Biology 74 (2023)

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6.

Journal Article

Wijesingha Ahchige, M.; Fernie, A. R.; Alseekh, S.: PANTOTHENATE KINASE4, LOSS OF GDU2, and TRANSPOSON PROTEIN1 affect the canalization of tomato fruit metabolism. Plant Physiology 192 (1), kiad093, pp. 442 - 468 (2023)

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7.

Journal Article

Zemach, I.; Alseekh, S.; Tadmor-Levi, R.; Fisher, J.; Torgeman, S.; Trigerman, S.; Nauen, J.; Hayut, S. F.; Mann, V.; Rochsar, E. et al.; Finkers, R.; Wendenburg, R.; Osorio, S.; Bergmann, S.; Lunn, J. E.; Semel, Y.; Hirschberg, J.; Fernie, A. R.; Zamir, D.: Multi-year field trials provide a massive repository of trait data on a highly diverse population of tomato and uncover novel determinants of tomato productivity. The Plant Journal (2023)

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8.

Journal Article

Neri-Silva, R.; Monteiro-Batista, R. D.; Fonseca-Pereira, P. D.; Nunes, M. D.; Viana-Silva, A. L.; Palhares Ribeiro, T.; Pérez-Díaz, J. L.; Medeiros, D.B.; Araújo, W. L.; Fernie, A. R. et al.; Nunes-Nesi, A.: On the Significance of the ADNT1 Carrier in Arabidopsis thaliana under Waterlogging Conditions. Biomolecules 13 (5), 731 (2023)

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9.

Journal Article

Bulut, M.; Alseekh, S.; Fernie, A. R.: Natural variation of respiration-related traits in plants. Plant Physiology 191 (4), pp. 2120 - 2132 (2023)

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10.

Journal Article

Chen, Y.; Wang, Y.; Liang, X.; Zhang, Y.; Fernie, A. R.: Mass spectrometric exploration of phytohormone profiles and signaling networks. Trends in Plant Science 28 (4), pp. 399 - 414 (2023)

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11.

Journal Article

Gago, J.; Nadal, M.; Clemente-Moreno, M. J.; Figueroa, C. M.; Medeiros, D.B.; Cubo-Ribas, N.; Cavieres, L. A.; Gulías, J.; Fernie, A. R.; Flexas, J. et al.; Bravo, L. A.: Nutrient availability regulates Deschampsia antarctica photosynthetic and stress tolerance performance in Antarctica. Journal of Experimental Botany 74, pp. 2620 - 2637 (2023)

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12.

Journal Article

He, Y.; Zhang, K.; Li, S.; Lu, X.; Zhao, H.; Guan, C.; Huang, X.; Shi, Y.; Kang, Z.; Fan, Y. et al.; Li, W.; Chen, C.; Li, G.; Long, O.; Chen, Y.; Hu, M.; Cheng, J.; Xu, B.; Chapman, M. A.; Georgiev, M. I.; Fernie, A. R.; Zhou, M.: Multi-omics analysis reveals the molecular mechanisms underlying virulence in Rhizoctonia and jasmonic acid–mediated resistance in Tartary buckwheat (Fagopyrum tataricum). The Plant Cell, koad118 (2023)

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13.

Journal Article

Hong, J.; Rosental, L.; Xu, Y.; Xu, D.; Orf, I.; Wang, W.; Hu, Z.; Su, S.; Bai, S.; Ashraf, M. et al.; Hu, C.; Zhang, C.; Li, Z.; Xu, J.; Liu, Q.; Zhang, H.; Zhang, F.; Luo, Z.; Chen, M.; Chen, X.; Betts, N.; Fernie, A. R.; Liang, W.; Chen, G.; Brotman, Y.; Zhang, D.; Shi, J.: Genetic architecture of seed glycerolipids in Asian cultivated rice. Plant, Cell and Environment 46 (4 - Special Issue: Rice 2050), pp. 1278 - 1294 (2023)

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14.

Journal Article

Valifard, M.; Fernie, A. R.; Kitashova, A.; Nägele, T.; Schröder, R.; Meinert, M.; Pommerrenig, B.; Mehner-Breitfeld, D.; Witte, C.-P.; Brüser, T. et al.; Keller, I.; Neuhaus, H. E.: The novel chloroplast glucose transporter pGlcT2 affects adaptation to extended light periods. The Journal of Biological Chemistry, 104741 (2023)

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15.

Journal Article

Mutwil, M.; Fernie, A. R.: Ancestral Genome Reconstruction for Studies of the Green Lineage. Molecular Plant 16 (4), pp. 657 - 659 (2023)

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16.

Journal Article

Aghajanzadeh, T.A.; Watanabe, M.; Tohge, T.; Hawkesford, M.J.; Fernie, A. R.; Hoefgen, R.; Elzenga, J.T.M.; De Kok, L.J.: Necrotrophic fungal infection affects indolic glucosinolate metabolism in Brassica rapa. Acta Physiologiae Plantarum 45 (5), 64 (2023)

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17.

Journal Article

Aharoni, A.; Goodacre, R.; Fernie, A. R.: Plant and microbial sciences as key drivers in the development of metabolomics research. Proceedings of the National Academy of Sciences of the United States of America 120 (12), e2217383120 (2023)

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18.

Journal Article

Chen, J.; Zhang, Y.; Yin, H.; Liu, W.; Hu, X.; Li, D.; Lan, C.; Gao, L.; He, Z.; Cui, F. et al.; Fernie, A. R.; Chen, W.: The pathway of melatonin biosynthesis in common wheat (Triticum aestivum). Journal of Pineal Research 74 (2), e12841 (2023)

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19.

Journal Article

Dahmani, I.; Qin, K.; Zhang, Y.; Fernie, A. R.: The Formation and Function of Plant Metabolons. The Plant Journal (2023)

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20.

Journal Article

López, C. M.; Alseekh, S.; Torralbo, F.; Martinez Rivas, F.J.; Fernie, A. R.; Amil-Ruiz, F.; Alamillo, J. M.: Transcriptomic and metabolomic analysis reveals that symbiotic nitrogen fixation enhances drought resistance in common bean. Journal of Experimental Botany, erad083 (2023)

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21.

Journal Article

Luzarowska, U.; Ruß, A.-K.; Joubès, J.; Batsale, M.; Szymański, J.; Thirumalaikumar, V. P.; Luzarowski, M.; Wu, S.; Zhu, F.; Endres, N. et al.; Khedhayir, S.; Schumacher, J.; Jasinska, W.; Xu, K.; Cordoba, S. M. C.; Weil, S.; Skirycz, A.; Fernie, A. R.; Li-Beisson, Y.; Fusari, C. M.; Brotman, Y.: Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana. The Plant Cell, koad059 (2023)

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22.

Journal Article

Sheng, O.; Yin, Z.; Huang, W.; Chen, M.; Du, M.; Kong, Q.; Fernie, A. R.; Yi, G.; Yan, S.: Metabolic profiling reveals genotype-associated alterations in carotenoid content during banana postharvest ripening. Food Chemistry 403, 134380 (2023)

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23.

Journal Article

Zhang, Q.; Shi, Y.; Hu, H.; Shi, Y.; Tang, D.; Ruan, J.; Fernie, A. R.; Liu, M.-Y.: Magnesium promotes tea plant growth via enhanced glutamine synthetase-mediated nitrogen assimilation. Plant Physiology, kiad143 (2023)

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24.

Journal Article

Zhang, Y.; Chen, M.; Liu, T.; Qin, K.; Fernie, A. R.: Investigating the dynamics of protein-protein interactions in plants. The Plant Journal (2023)

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25.

Journal Article

Shi, Y.; Zhang, Y.; Sun, Y.; Xie, Z.; Luo, Y.; Long, Q.; Feng, J.; Liu, X.; Wang, B.; He, D. et al.; Ren, J.; Guo, P.; Xing, J.; He, L.; Fernie, A. R.; Chen, W.; Liu, X.; Luo, Y.; Jin, C.; Luo, J.: Natural variations of OsAUX5, a target gene of OsWRKY78, control the neutral essential amino acid content in rice grains. Molecular Plant 16 (2), pp. 322 - 336 (2023)

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26.

Journal Article

Cerqueira, J. V. A.; Zhu, F.; Mendes, K.; Nunes-Nesi, A.; Martins, S. C. V.; Benedito, V.; Fernie, A. R.; Zsögön, A.: Promoter replacement of ANTHOCYANIN1 induces anthocyanin accumulation and triggers shade avoidance response through developmental, physiological and metabolic reprogramming in tomato. Horticulture Research 10 (2), uhac254 (2023)

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27.

Journal Article

Chen, Y.; Chao, Z.-F.; Jin, M.; Wang, Y.-L.; Li, Y.; Wu, J.-C.; Xiao, Y.; Peng, Y.; Lv, Q.-Y.; Gui, S. et al.; Wang, X.; Han, M.-L.; Fernie, A. R.; Chao, D.-Y.; Yan, J.: A heavy metal transporter gene ZmHMA3a promises safe agricultural production on cadmium-polluted arable land. Journal of Genetics and Genomics 50 (2), p. 130-134 (2023)

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28.

Journal Article

Gui, S.; Martinez Rivas, F.J.; Wen, W.; Meng, M.; Yan, J.; Usadel, B.; Fernie, A. R.: Going broad and deep: sequencing driven insights into plant physiology, evolution and crop domestication. The Plant Journal 113 (3), pp. 446 - 459 (2023)

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29.

Journal Article

Hu, X.; Fernie, A. R.; Yan, J.: Deep learning in regulatory genomics: from identification to design. Current Opinion in Biotechnology 79, 102887 (2023)

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30.

Journal Article

Julca, I.; Mutwil-Anderwald, D.; Manoj, V.; Khan, Z.; Lai, S. K.; Yang, L. K.; Beh, I. T.; Dziekan, J.; Lim, Y. P.; Lim, S. K. et al.; Low, Y. W.; Lam, Y. I.; Tjia, S.; Mu, Y.; Tan, Q. W.; Nuc, P.; Choo, L. M.; Khew, G.; Shining, L.; Kam, A.; Tam, J. P.; Bozdech, Z.; Schmidt, M.; Usadel, B.; Kanagasundaram, Y. s.; Alseekh, S.; Fernie, A. R.; Li, H. Y.; Mutwil, M.: Genomic, transcriptomic, and metabolomic analysis of Oldenlandia corymbosa reveals the biosynthesis and mode of action of anti-cancer metabolites. Journal of Integrative Plant Biology (2023)

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31.

Journal Article

Li, H.; Fernie, A. R.; Yang, X.: Using systems metabolic engineering strategies for high-oil maize breeding. Current Opinion in Biotechnology 79, 102847 (2023)

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32.

Journal Article

Liu, Y.; Nour-Eldin, H.H.; Zhang, L.; Li, Z.; Fernie, A. R.; Ren, M.: Biotechnological detoxification: an unchanging source–sink balance strategy for crop improvement. Trends in Plant Science 28 (2), pp. 135 - 138 (2023)

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33.

Journal Article

Yin, Z.; Huang, W.; Fernie, A. R.; Yan, S.: Mass spectrometry imaging techniques: a versatile toolbox for plant metabolomics. Trends in Plant Science 28 (2), pp. 250 - 251 (2023)

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34.

Journal Article

Bellucci, E.; Benazzo, A.; Xu, C.; Bitocchi, E.; Rodriguez, M.; Alseekh, S.; Di Vittori, V.; Gioia, T.; Neumann, K.; Cortinovis, G. et al.; Frascarelli, G.; Murube, E.; Trucchi, E.; Nanni, L.; Ariani, A.; Logozzo, G.; Shin, J. H.; Liu, C.; Jiang, L.; Ferreira, J. J.; Campa, A.; Attene, G.; Morrell, P. L.; Bertorelle, G.; Graner, A.; Gepts, P.; Fernie, A. R.; Jackson, S. A.; Papa, R.: Selection and adaptive introgression guided the complex evolutionary history of the European common bean. Nature Communications 14, 1908 (2023)

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35.

Journal Article

Guo, H.; Cao, P.; Wang, C.; Lai, J.; Deng, Y.; Li, C.; Hao, Y.; Wu, Z.; Chen, R.; Qiang, Q. et al.; Fernie, A. R.; Yang, J.; Wang, S.: Population analysis reveals the roles of DNA methylation in tomato domestication and metabolic diversity. Science China Life Sciences (2023)

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36.

Journal Article

Hunt, H.; Brueggen, N.; Galle, A.; Vanderauwera, S.; Frohberg, C.; Fernie, A. R.; Sonnewald, U.; Sweetlove, L.: Analysis of companion cell and phloem metabolism using a transcriptome-guided model of Arabidopsis metabolism. Plant Physiology (2023)

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37.

Journal Article

Lima, L.G.A.D.; Ferreira, S.S.; Simões, M.S.; Cunha, L.X.D.; Fernie, A. R.; Cesarino, I.: Comprehensive expression analyses of the ABCG subfamily reveal SvABCG17 as a potential transporter of lignin monomers in the model C4 grass Setaria viridis. Journal of Plant Physiology 280, 153900 (2023)

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38.

Journal Article

Natale, R.; Coppola, M.; D'Agostino, N.; Zhang, Y.; Fernie, A. R.; Castaldi, V.; Rao, R.: In silico and in vitro approaches allow the identification of the Prosystemin molecular network. Computational and Structural Biotechnology Journal 21, pp. 212 - 223 (2023)

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39.

Journal Article

Poplawski, P.; Alseekh, S.; Jankowska, U.; Skupien-Rabian, B.; Iwanicka-Nowicka, R.; Kossowska, H.; Fogtman, A.; Rybicka, B.; Bogusławska, J.; Adamiok-Ostrowska, A. et al.; Hanusek, K.; Hanusek, J.; Koblowska, M.; Fernie, A. R.; Piekiełko-Witkowska, A.: Coordinated reprogramming of renal cancer transcriptome, metabolome and secretome associates with immune tumor infiltration. Cancer Cell International 23 (1), 2 (2023)

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40.

Journal Article

Salem, M.; El-Shiekh, R.; Aborehab, N.; Al-Karmalawy, A.; Ezzat, S.; Alseekh, S.; Fernie, A. R.: Metabolomics driven analysis of Nigella sativa seeds identifies the impact of roasting on the chemical composition and immunomodulatory activity. Food Chemistry 398, 133906 (2023)

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41.

Journal Article

Sarnowska, E.; Kubala, S.; Cwiek, P.; Sacharowski, S.; Oksinska, P.; Steciuk, J.; Zaborowska, M.; Szurmak, J. M.; Dubianski, R.; Maassen, A. et al.; Stachowiak, M.; Huettel, B.; Ciesla, M.; Nowicka, K.; Rolicka, A. T.; Alseekh, S.; Bucior, E.; Franzen, R.; Skoneczna, A.; Domagalska, M. A.; Amar, S.; Hajirezaei, M.-R.; Siedlecki, J. A.; Fernie, A. R.; Davis, S. J.; Sarnowski, T. J.: A non-canonical function of Arabidopsis ERECTA proteins and a role of the SWI3B subunit of the SWI/SNF chromatin remodeling complex in gibberellin signaling. The Plant Journal (2023)

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42.

Journal Article

Sun, Y.; Alseekh, S.; Fernie, A. R.: Plant secondary metabolic responses to global climate change: A meta-analysis in medicinal and aromatic plants. GCB Bioenergy 29 (2), pp. 477 - 504 (2023)

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43.

Journal Article

Wang, S.; Qiang, Q.; Xiang, L.; Fernie, A. R.; Yang, J.: Targeted approaches to improve tomato fruit taste. Horticulture Research 10 (1), uhac229 (2023)

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44.

Journal Article

Yang, Z.; Liu, Z.; Xu, H.; Yufei, L.; Huang, S.; Cao, G.; Shi, M.; Zhu, J.; Zhou, J.; Li, R. et al.; Ding, Y.; Xiao, Y.; Liu, X.; Fernie, A. R.; Luo, J.: ArecaceaeMDB: A comprehensive multi-omics database for Arecaceae breeding and functional genomics studies. Plant Biotechnology Journal 21 (1), pp. 11 - 13 (2023)

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45.

Journal Article

Yuan, P.; Xu, C.; He, N.; Lu, X.; Zhang, X.; Shang, J.; Zhu, H.; Gong, C.; Kuang, H.; Tang, T. et al.; Xu, Y.; Ma, S.; Sun, D.; Zhang, W.; Umer, M.J.; Shi, J.; Fernie, A. R.; Liu, W.; Luo, J.: Watermelon domestication was shaped by stepwise selection and regulation of the metabolome. Science China Life Sciences 66, pp. 579 - 594 (2023)

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46.

Journal Article

Zhang, Y.; Fernie, A. R.: Leveraging glycoside-targeted metabolomics to gain insight into biological function. Trends in Plant Science (2023)

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47.

Journal Article

Zhao, H.; He, Y.; Zhang, K.; Li, S.; Chen, Y.; He, M.; He, F.; Gao, B.; Yang, D.; Fan, Y. et al.; Zhu, X.; Yan, M.; Giglioli-Guivarc'h, N.; Hano, C.; Fernie, A. R.; Georgiev, M. I.; Dagmar, J.; Meglič, V.; Zhou, M.: Rewiring of the Seed Metabolome during Tartary Buckwheat Domestication. Plant Biotechnology Journal 21 (1), pp. 150 - 164 (2023)

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48.

Journal Article

Zhu, F.; Sun, Y.; Jadhav, S. S.; Cheng, Y.; Alseekh, S.; Fernie, A. R.: The Plant Metabolic Changes and the Physiological and Signaling Functions in the Responses to Abiotic Stress. Methods in Molecular Biology 2642, pp. 129 - 150 (2023)

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49.

Journal Article

Porto, N.P.; Bret, R.S.C.; Souza, P.V.L.; Cândido-Sobrinho, S.A.; Medeiros, D.B.; Fernie, A. R.; Daloso, D. M.: Thioredoxins regulate the metabolic fluxes throughout the tricarboxylic acid cycle and associated pathways in a light-independent manner. Plant Physiology and Biochemistry 193, pp. 36 - 49 (2022)

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50.

Journal Article

Ahouvi, Y.; Haber, Z.; Zach, Y. Y.; Rosental, L.; Toubiana, D.; Sharma, D.; Alseekh, S.; Tajima, H.; Fernie, A. R.; Brotman, Y. et al.; Blumwald, E.; Sade, N.: The Alteration Of Tomato CHLOROPLAST VESICULATION Positively Affects Whole-Plant Source–Sink Relations And Fruit Metabolism Under Stress Conditions. Plant and Cell Physiology 63 (12), pp. 2008 - 2026 (2022)

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