Publications of F. M. Giorgi

Journal Article (13)

1.
Journal Article
Lee, Y. P., Giorgi, F. M., Lohse, M., Kvederaviciute, K., Klages, S., Usadel, B., Meskiene, I., Reinhardt, R. & Hincha, D. K. Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum). BMC Genomics 14, 793–793 (2013).
2.
Journal Article
Li, J.-W., Bolser, D., Manske, M., Giorgi, F., Vyahhi, N., Usadel, B., Clavijo, B. J., Chan, T.-F., Wong, N., Zerbino, D. & Schneider, M. V. The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. Briefings in Bioinformatics 14, 548–555 (2013).
3.
Journal Article
Paparelli, E., Gonzali, S., Parlanti, S., Novi, G., Giorgi, F. M., Licausi, F., Kosmacz, M., Feil, R., Lunn, J. E., Brust, H., van Dongen, J. T., Steup, M. & Perata, P. Misexpression of a Chloroplast Aspartyl Protease Leads to Severe Growth Defects and Alters Carbohydrate Metabolism in Arabidopsis. Plant Physiology 160, 1237–1250 (2012).
4.
Journal Article
Vasilevski, A., Giorgi, F. M., Bertinetti, L. & Usadel, B. LASSO modeling of the Arabidopsis thaliana seed/seedling transcriptome: a model case for detection of novel mucilage and pectin metabolism genes. Molecular Biosystems 8, 2566–2574 (2012).
5.
Journal Article
Licausi, F., Giorgi, F. M., Schmalzlin, E., Usadel, B., Perata, P., van Dongen, J. T. & Geigenberger, P. HRE-Type Genes Are Regulated by Growth-Related Changes in Internal Oxygen Concentrations During the Normal Development of Potato (Solanum tuberosum) Tubers. Plant & Cell Physiology 52, 1957–1972 (2011).
6.
Journal Article
Licausi, F., Kosmacz, M., Weits, D. A., Giuntoli, B., Giorgi, F. M., Voesenek, L. A. C. J., Perata, P. & van Dongen, J. T. Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization. Nature 479, 419–422 (2011).
7.
Journal Article
Mutwil, M., Klie, S., Tohge, T., Giorgi, F. M., Wilkins, O., Campbell, M. M., Fernie, A. R., Usadel, B., Nikoloski, Z. & Persson, S. PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. The Plant Cell 23, 895–910 (2011).
8.
Journal Article
Ryngajllo, M., Childs, L., Lohse, M., Giorgi, F. M., Lude, A., Selbig, J. & Usadel, B. SLocX: predicting subcellular localization of Arabidopsis proteins leveraging gene expression data. Frontiers in Plant Science 2, 43 (2011).
9.
Journal Article
Giorgi, F. M., Bolger, A. M., Lohse, M. & Usadel, B. Algorithm-driven Artifacts in median polish summarization of Microarray data. BMC Bioinformatics 11, 553 (2010).
10.
Journal Article
Licausi, F., Giorgi, F. M., Zenoni, S., Osti, F., Pezzotti, M. & Perata, P. Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera. BMC Genomics 11, 719 (2010).
11.
Journal Article
Lohse, M., Nunes-Nesi, A., Krueger, P., Nagel, A., Hannemann, J., Giorgi, F. M., Childs, L., Osorio, S., Walther, D., Selbig, J., Sreenivasulu, N., Stitt, M., Fernie, A. R. & Usadel, B. Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis. Plant Physiology 153, 642–651 (2010).
12.
Journal Article
Mutwil, M., Ruprecht, C., Giorgi, F. M., Bringmann, M., Usadel, B. & Persson, S. Transcriptional Wiring of Cell Wall-Related Genes in Arabidopsis. Molecular Plant 2, 1015–1024 (2009).
13.
Journal Article
Usadel, B., Obayashi, T., Mutwil, M., Giorgi, F. M., Bassel, G. W., Tanimoto, M., Chow, A., Steinhauser, D., Persson, S. & Provart, N. J. Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell and Environment 32, 1633–1651 (2009).
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