Publications of F. Scossa

Kou, S., Chen, L., Tu, W., Scossa, F., Wang, Y., Liu, J., Fernie, A. R., Song, B. & Xie, C. The arginine decarboxylase gene ADC1, associated to the putrescine pathway, plays an important role in potato cold-acclimated freezing tolerance as revealed by transcriptome and metabolome analyses. The Plant Journal 96, 1283–1298 (2018).

Scossa, F. & Fernie, A. R. How fruit ripening is ENCODEd. Nature Plants 4, 744–745 (2018).

Shnaider, Y., Mitra, D., Miller, G., Baniel, A., Doniger, T., Kuhalskaya, A., Scossa, F., Fernie, A. R., Brotman, Y. & Perl-Treves, R. Cucumber ovaries inhibited by dominant fruit express a dynamic developmental program, distinct from either senescence-determined or fruit-setting ovaries. The Plant Journal 96, 651–669 (2018).

Zhang, Y. J., Swart, C., Alseekh, S., Scossa, F., Jiang, L., Obata, T., Graf, A. & Fernie, A. R. The Extra-Pathway Interactome of the TCA Cycle: Expected and Unexpected Metabolic Interactions. Plant Physiology 177, 966–979 (2018).

Alseekh, S., Tong, H., Scossa, F., Brotman, Y., Vigroux, F., Tohge, T., Ofner, I., Zamir, D., Nikoloski, Z. & Fernie, A. R. Canalization of Tomato Fruit Metabolism. Plant Cell 29, 2753–2765 (2017).

Tanou, G., Minas, I. S., Scossa, F., Belghazi, M., Xanthopoulou, A., Ganopoulos, I., Madesis, P., Fernie, A. R. & Molassiotis, A. Exploring priming responses involved in peach fruit acclimation to cold stress. Scientific Reports 7, (2017).

Bustamante, C. A., Monti, L. L., Gabilondo, J., Scossa, F., Valentini, G., Budde, C. O., Lara, M. V., Fernie, A. R. & Drincovich, M. F. Differential Metabolic Rearrangements after Cold Storage Are Correlated with Chilling Injury Resistance of Peach Fruits. Frontiers in Plant Science 7, (2016).

Scossa, F., Brotman, Y., de Abreu e Lima, F., Willmitzer, L., Nikoloski, Z., Tohge, T. & Fernie, A. R. Genomics-based strategies for the use of natural variation in the improvement of crop metabolism. Plant Science 242, 47–64 (2016).

Rosado-Souza, L., Scossa, F., Chaves, I. S., Kleessen, S., Salvador, L. F. D., Milagre, J. C., Finger, F., Bhering, L. L., Sulpice, R., Araujo, W. L., Nikoloski, Z., Fernie, A. R. & Nunes-Nesi, A. Exploring natural variation of photosynthetic, primary metabolism and growth parameters in a large panel of Capsicum chinense accessions. Planta 242, 677–691 (2015).

Alseekh, S., Tohge, T., Wendenburg, R., Scossa, F., Omranian, N., Li, J., Kleessen, S., Giavalisco, P., Pleban, T., Mueller-Roeber, B., Zamir, D., Nikoloski, Z. & Fernie, A. R. Identification and mode of inheritance of quantitative trait Loci for secondary metabolite abundance in tomato. The Plant Cell 27, 485–512 (2015).

Tohge, T., Scossa, F. & Fernie, A. R. Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation. Plant Physiology 169, 1499–1511 (2015).

Toubiana, D., Batushansky, A., Tzfadia, O., Scossa, F., Khan, A., Barak, S., Zamir, D., Fernie, A. R., Nikoloski, Z. & Fait, A. Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds. The Plant Journal 81, 121–133 (2015).

Bolger, A. M., Scossa, F., Bolger, A. M., Lanz, C., Maumus, F., Tohge, T., Quesneville, H., Alseekh, S., Sorensen, I., Lichtenstein, G., Fich, E. A., Conte, M., Keller, H., Schneeberger, K., Schwacke, R., Ofner, I., Vrebalov, J., Xu, Y., Osorio, S., Aflitos, S. A., Schijlen, E., Jimenez-Gomez, J. M., Ryngajllo, M., Kimura, S., Kumar, R., Koenig, D., Headland, L. R., Maloof, J. N., Sinha, N., van Ham, R. C. H. J., Lankhorst, R. K., Mao, L., Vogel, A., Arsova, B., Panstruga, R., Fei, Z., Rose, J. K. C., Zamir, D., Carrari, F. F., Giovannoni, J. J., Weigel, D., Usadel, B. & Fernie, A. R. The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Genetics 46, 1034–1038 (2014).

Schmitz, J., Heinrichs, L., Scossa, F., Fernie, A. R., Oelze, M.-L., Dietz, K.-J., Rothbart, M., Grimm, B., Fluegge, U.-I. & Haeusler, R. E. The essential role of sugar metabolism in the acclimation response of Arabidopsis thaliana to high light intensities. Journal of Experimental Botany 65, 1619–1636 (2014).

Toepfer, N., Scossa, F., Fernie, A. R. & Nikoloski, Z. Variability of Metabolite Levels Is Linked to Differential Metabolic Pathways in Arabidopsis's Responses to Abiotic Stresses. PLoS Computational Biology 10, (2014).

Osorio, S., Scossa, F. & Fernie, A. R. Molecular regulation of fruit ripening. Frontiers in Plant Science 4, (2013).

Zhu, F., Fernie, A. R. & Scossa, F. in Genome Wide Association Studies (eds. Torkamabeh, D. & Belzile, F.) 2481, (Humana, 2022).

Alseekh, S., Scossa, F., Wen, W., Luo, J., Yan, J., Beleggia, R., Klee, H. J., Huang, S., Papa, R. & Fernie, A. R. Domestication of Crop Metabolomes: Desired and Unintended Consequences. Trends in Plant Science 26, 650–661 (2021).

Scossa, F., Benina, M., Alseekh, S., Zhang, Y. J. & Fernie, A. R. The Integration of Metabolomics and Next-Generation Sequencing Data to Elucidate the Pathways of Natural Product Metabolism in Medicinal Plants. Planta Media 84, 855–873 (2018).